Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G15.16 Capsicum annuum HOM05D005949 ORTHO05D006945 2.7e-45 184.9 89 100.0
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 2.5e-22 108.6 61 85.2
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 2.5e-22 108.6 61 85.2
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 4.2e-22 107.8 61 85.2
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 5.5e-22 107.5 59 86.4
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 5.5e-22 107.5 59 86.4
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 1.2e-21 106.3 59 84.7
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 4.7e-21 104.4 62 83.9
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 6.1e-21 104.0 62 80.6
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 6.8e-20 100.5 59 81.4
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 2.0e-19 99.0 59 79.7
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 3.4e-19 98.2 58 81.0
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 1.3e-18 96.3 59 76.3
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 2.2e-18 95.5 58 77.6
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 2.2e-18 95.5 58 77.6
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 2.2e-18 95.5 58 77.6
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 3.7e-18 94.7 59 76.3
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 3.7e-18 94.7 58 77.6
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 4.8e-18 94.4 59 76.3
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 1.1e-17 93.2 58 75.9
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 4.1e-17 91.3 58 69.0
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 7.0e-17 90.5 58 69.0
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 7.0e-17 90.5 57 73.7
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 9.1e-17 90.1 76 56.6
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 1.2e-16 89.7 59 67.8
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 1.2e-16 89.7 54 74.1
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.2e-16 89.7 56 71.4
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 1.2e-16 89.7 58 69.0
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 2.0e-16 89.0 54 77.8
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 2.7e-16 88.6 54 75.9
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 2.7e-16 88.6 56 69.6
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 3.5e-16 88.2 61 72.1
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 3.5e-16 88.2 57 71.9
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 4.5e-16 87.8 58 69.0
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 1.0e-15 86.7 54 74.1
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 1.0e-15 86.7 56 73.2
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 1.3e-15 86.3 54 74.1
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 1.7e-15 85.9 58 67.2
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 1.7e-15 85.9 56 69.6
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 1.7e-15 85.9 57 70.2
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 3.8e-15 84.7 57 68.4
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 3.8e-15 84.7 57 68.4
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 6.6e-15 84.0 57 68.4
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 8.6e-15 83.6 57 68.4
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 1.1e-14 83.2 52 69.2
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 1.1e-14 83.2 55 65.5
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 1.1e-14 83.2 55 69.1
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 1.1e-14 83.2 53 73.6
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 1.9e-14 82.4 55 65.5
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 1.9e-14 82.4 55 65.5
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 1.9e-14 82.4 55 65.5
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 1.9e-14 82.4 55 65.5
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 1.9e-14 82.4 55 65.5
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 1.9e-14 82.4 51 76.5
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 1.9e-14 82.4 57 63.2
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.9e-14 82.4 58 67.2
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.9e-14 82.4 58 67.2
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 1.9e-14 82.4 58 67.2
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 2.5e-14 82.0 59 66.1
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 3.3e-14 81.6 54 72.2
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 3.3e-14 81.6 56 67.9
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 4.2e-14 81.3 55 63.6
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 4.2e-14 81.3 55 63.6
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 4.2e-14 81.3 55 63.6
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 9.5e-14 80.1 55 61.8
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 9.5e-14 80.1 54 70.4
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 9.5e-14 80.1 55 61.8
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 1.2e-13 79.7 52 65.4
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 1.2e-13 79.7 55 67.3
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 1.2e-13 79.7 53 67.9
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 1.6e-13 79.3 55 65.5
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 1.6e-13 79.3 57 61.4
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 1.6e-13 79.3 57 59.6
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 2.8e-13 78.6 57 59.6
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 2.8e-13 78.6 54 66.7
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 3.6e-13 78.2 52 65.4
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 3.6e-13 78.2 52 69.2
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 3.6e-13 78.2 51 70.6
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 4.7e-13 77.8 56 66.1
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 1.8e-12 75.9 54 66.7
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 1.8e-12 75.9 51 70.6
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 1.8e-12 75.9 51 70.6
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 1.8e-12 75.9 58 65.5
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 3.0e-12 75.1 54 64.8
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 3.0e-12 75.1 51 66.7
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 8.9e-12 73.6 58 62.1
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 1.5e-11 72.8 58 62.1
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 2.0e-11 72.4 47 70.2
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 2.0e-11 72.4 51 66.7
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 3.4e-11 71.6 53 64.2
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 7.5e-11 70.5 42 78.6
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 9.8e-11 70.1 51 62.7
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 1.7e-10 69.3 39 79.5
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 1.7e-10 69.3 56 64.3
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 2.2e-10 68.9 43 72.1
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 2.2e-10 68.9 42 76.2
CAN.G1258.4 Capsicum annuum HOM05D005949 ORTHO05D006945 3.7e-10 68.2 50 66.0
CAN.G898.5 Capsicum annuum HOM05D005949 ORTHO05D006945 3.7e-10 68.2 61 54.1
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 3.7e-10 68.2 47 68.1
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 3.7e-10 68.2 51 60.8
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 4.9e-10 67.8 56 57.1
CAN.G2149.1 Capsicum annuum HOM05D001265 ORTHO05D006945 8.3e-10 67.0 39 76.9
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 1.1e-09 66.6 51 58.8
CAN.G1086.1 Capsicum annuum HOM05D005949 ORTHO05D006945 2.4e-09 65.5 58 58.6
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 2.4e-09 65.5 50 60.0
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 1.2e-08 63.2 41 68.3
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 1.2e-08 63.2 45 62.2
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 1.6e-08 62.8 51 54.9
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 2.0e-08 62.4 48 58.3
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 2.7e-08 62.0 44 61.4
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 2.7e-08 62.0 40 65.0
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 5.9e-08 60.8 46 65.2
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 5.0e-07 57.8 35 71.4
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 2.5e-06 55.5 42 59.5


User provided reference genes

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