Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 4.1e-35 151.0 83 100.0
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 1.7e-28 129.0 82 87.8
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 1.8e-27 125.6 82 81.7
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 4.5e-26 120.9 82 80.5
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 1.1e-24 116.3 82 74.4
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 9.4e-24 113.2 82 76.8
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 1.6e-23 112.5 82 72.0
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.6e-23 112.5 82 75.6
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 3.6e-23 111.3 82 75.6
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 4.7e-23 110.9 82 75.6
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 4.0e-22 107.8 82 69.5
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 4.0e-22 107.8 82 73.2
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 2.6e-21 105.1 82 68.3
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.8e-19 99.0 82 65.9
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 4.5e-18 94.4 80 63.8
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 1.0e-17 93.2 82 64.6
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 1.7e-17 92.4 82 63.4
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 4.2e-16 87.8 77 63.6
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 9.4e-16 86.7 82 61.0
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 1.2e-15 86.3 82 61.0
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 1.6e-15 85.9 69 65.2
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 3.6e-15 84.7 82 59.8
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 6.1e-15 84.0 60 71.7
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 6.1e-15 84.0 61 68.9
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 6.1e-15 84.0 61 68.9
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 8.0e-15 83.6 65 66.2
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 8.0e-15 83.6 82 62.2
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 1.4e-14 82.8 61 65.6
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 1.8e-14 82.4 61 67.2
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 1.8e-14 82.4 82 57.3
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 1.8e-14 82.4 82 57.3
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 1.8e-14 82.4 69 62.3
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 2.3e-14 82.0 60 66.7
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 2.3e-14 82.0 82 58.5
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 2.3e-14 82.0 82 57.3
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 3.0e-14 81.6 82 57.3
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 3.0e-14 81.6 82 58.5
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 4.0e-14 81.3 82 58.5
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 4.0e-14 81.3 82 58.5
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 5.2e-14 80.9 82 58.5
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 6.8e-14 80.5 63 65.1
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 6.8e-14 80.5 59 67.8
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 8.8e-14 80.1 62 62.9
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 1.2e-13 79.7 84 58.3
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 1.2e-13 79.7 83 57.8
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 1.2e-13 79.7 71 63.4
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 1.5e-13 79.3 90 53.3
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 2.0e-13 79.0 81 56.8
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 2.0e-13 79.0 59 67.8
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 2.6e-13 78.6 82 56.1
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 2.6e-13 78.6 62 67.7
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 7.5e-13 77.0 84 58.3
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 7.5e-13 77.0 60 60.0
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 7.5e-13 77.0 48 77.1
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 7.5e-13 77.0 60 61.7
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 9.8e-13 76.6 82 52.4
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 9.8e-13 76.6 82 53.7
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 9.8e-13 76.6 82 52.4
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 9.8e-13 76.6 82 52.4
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 9.8e-13 76.6 82 52.4
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 9.8e-13 76.6 82 52.4
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 9.8e-13 76.6 60 60.0
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 9.8e-13 76.6 85 52.9
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 1.3e-12 76.3 82 53.7
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 1.7e-12 75.9 82 54.9
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 1.7e-12 75.9 80 56.2
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 1.7e-12 75.9 82 51.2
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 2.2e-12 75.5 60 61.7
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 2.2e-12 75.5 82 51.2
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 2.8e-12 75.1 62 59.7
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 2.8e-12 75.1 90 51.1
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 2.8e-12 75.1 82 50.0
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 3.7e-12 74.7 82 52.4
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 3.7e-12 74.7 82 51.2
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 4.8e-12 74.3 79 51.9
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 4.8e-12 74.3 59 61.0
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 4.8e-12 74.3 60 60.0
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 6.3e-12 73.9 70 52.9
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 8.3e-12 73.6 82 53.7
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 8.3e-12 73.6 60 58.3
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 1.1e-11 73.2 67 55.2
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 1.4e-11 72.8 55 63.6
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 1.8e-11 72.4 58 60.3
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 2.4e-11 72.0 82 53.7
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 2.4e-11 72.0 55 61.8
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 2.4e-11 72.0 59 57.6
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 3.1e-11 71.6 82 50.0
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 3.1e-11 71.6 82 50.0
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 3.1e-11 71.6 82 53.7
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 3.1e-11 71.6 63 60.3
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 3.1e-11 71.6 53 62.3
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 4.1e-11 71.2 59 61.0
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 4.1e-11 71.2 69 55.1
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 4.1e-11 71.2 55 61.8
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 5.4e-11 70.9 81 53.1
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 5.4e-11 70.9 82 52.4
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 7.0e-11 70.5 55 60.0
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 9.1e-11 70.1 82 48.8
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 9.1e-11 70.1 62 58.1
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 1.2e-10 69.7 82 50.0
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 1.2e-10 69.7 60 56.7
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 2.7e-10 68.6 82 46.3
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 2.7e-10 68.6 82 47.6
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 4.5e-10 67.8 82 46.3
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 7.7e-10 67.0 65 55.4
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 7.7e-10 67.0 83 49.4
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 7.7e-10 67.0 65 52.3
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 1.0e-09 66.6 60 55.0
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 1.7e-09 65.9 81 48.1
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 2.2e-09 65.5 83 49.4
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 2.9e-09 65.1 53 60.4
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 2.9e-09 65.1 82 47.6
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 2.9e-09 65.1 82 47.6
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 3.8e-09 64.7 81 46.9
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 5.0e-09 64.3 84 50.0
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 8.5e-09 63.5 81 48.1
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 8.5e-09 63.5 84 48.8
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 8.5e-09 63.5 57 54.4
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 1.1e-08 63.2 81 46.9
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 1.9e-08 62.4 84 48.8
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.9e-08 62.4 84 48.8
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 3.2e-08 61.6 81 48.1
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 7.2e-08 60.5 81 51.9
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 9.4e-08 60.1 83 51.8
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 2.1e-07 58.9 51 54.9
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 2.7e-07 58.5 88 45.5
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 2.7e-07 58.5 80 47.5
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 4.7e-07 57.8 82 47.6
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 1.0e-06 56.6 82 46.3
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 1.4e-06 56.2 51 54.9
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 5.2e-06 54.3 78 43.6


User provided reference genes

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