Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 3.6e-302 1040.8 527 100.0
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 3.5e-265 917.9 529 89.0
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 1.4e-261 906.0 529 88.5
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 3.1e-261 904.8 529 88.5
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 6.2e-214 747.7 430 85.1
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 5.3e-213 744.6 430 84.4
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 7.4e-183 644.4 430 76.3
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 2.9e-171 605.9 520 61.5
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.5e-167 593.6 486 62.3
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.2e-166 589.7 522 60.2
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 4.8e-166 588.6 487 62.8
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 6.3e-166 588.2 522 60.0
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 5.9e-164 581.6 429 67.1
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 3.8e-163 578.9 534 58.4
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 5.5e-162 575.1 540 57.2
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 9.5e-162 574.3 493 61.5
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.1e-161 573.2 486 60.7
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 3.6e-161 572.4 521 58.0
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 4.7e-161 572.0 524 58.0
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.4e-160 570.5 486 60.5
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 3.0e-160 569.3 516 56.4
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 1.7e-158 563.5 516 56.4
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 2.8e-158 562.8 516 56.2
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 1.1e-157 560.8 541 55.8
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.8e-157 560.1 487 59.5
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 1.2e-156 557.4 519 58.0
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.2e-156 557.4 433 65.1
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 5.9e-156 555.1 517 56.3
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 7.8e-156 554.7 487 58.9
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 2.9e-155 552.7 487 58.1
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 3.9e-155 552.4 486 58.6
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 6.6e-155 551.6 485 60.4
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 8.6e-155 551.2 589 53.0
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.1e-154 550.8 483 58.2
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.5e-154 549.7 525 57.0
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 7.3e-154 548.1 490 57.6
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 1.6e-153 547.0 526 56.8
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.6e-153 547.0 482 58.9
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.6e-153 547.0 494 58.3
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 6.1e-153 545.0 433 62.8
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 2.3e-152 543.1 485 56.9
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 2.3e-152 543.1 485 56.5
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 6.8e-152 541.6 490 56.5
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 8.9e-152 541.2 485 56.1
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 2.6e-151 539.7 495 58.0
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.7e-150 537.0 443 60.7
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 1.7e-150 537.0 490 57.3
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 2.9e-150 536.2 434 63.4
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 6.4e-150 535.0 484 59.1
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.1e-149 534.3 519 56.5
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.1e-149 534.3 529 54.3
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.2e-148 530.8 486 56.6
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 2.0e-148 530.0 478 57.7
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.7e-148 529.6 423 62.4
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 2.7e-148 529.6 485 56.3
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 1.0e-147 527.7 526 54.6
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 1.3e-147 527.3 485 56.1
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 2.3e-147 526.6 488 57.2
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 2.3e-147 526.6 492 56.1
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.9e-146 523.5 423 62.9
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 2.5e-146 523.1 488 56.4
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 7.3e-146 521.5 487 56.5
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 9.5e-146 521.2 485 56.5
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 2.1e-145 520.0 484 55.6
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 6.2e-145 518.5 493 56.2
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 6.2e-145 518.5 440 59.8
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 1.1e-144 517.7 487 56.1
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.8e-144 516.9 485 55.3
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 1.8e-144 516.9 485 55.5
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 3.1e-144 516.2 644 46.7
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 5.2e-144 515.4 496 55.4
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 8.9e-144 514.6 423 61.0
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 2.0e-143 513.5 488 55.1
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.3e-142 510.8 444 58.3
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.7e-142 510.4 492 54.3
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.7e-142 510.4 492 54.3
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.7e-142 510.4 488 55.5
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 4.9e-142 508.8 444 59.7
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 6.4e-142 508.4 487 54.4
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 4.1e-141 505.8 494 54.7
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 5.4e-141 505.4 436 58.7
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 1.6e-140 503.8 482 55.6
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 2.7e-140 503.1 486 55.1
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 1.0e-139 501.1 493 53.8
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.3e-139 500.7 475 57.5
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.3e-139 500.7 489 55.0
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 3.0e-139 499.6 433 58.7
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 3.9e-139 499.2 434 59.4
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 5.1e-139 498.8 490 52.9
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 5.6e-138 495.4 486 54.3
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 7.3e-138 495.0 489 54.8
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.6e-137 493.8 592 47.8
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 8.1e-137 491.5 444 56.8
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.8e-136 490.3 489 52.1
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 4.0e-136 489.2 443 56.2
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 6.8e-136 488.4 443 56.4
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 8.9e-136 488.0 444 56.3
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 1.5e-135 487.3 444 56.5
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 3.4e-135 486.1 446 55.4
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 4.4e-135 485.7 434 56.9
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 5.8e-135 485.3 483 52.2
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 1.7e-134 483.8 424 59.2
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 2.9e-134 483.0 489 51.5
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 3.7e-134 482.6 443 56.0
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.1e-133 481.1 445 55.7
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 1.4e-133 480.7 445 55.1
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 1.4e-133 480.7 445 55.1
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 1.9e-133 480.3 434 56.7
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.9e-133 480.3 445 54.8
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 3.2e-133 479.6 434 55.8
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.1e-132 476.9 431 57.5
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 2.7e-132 476.5 483 51.1
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 1.3e-131 474.2 446 55.4
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 1.3e-131 474.2 469 53.3
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.7e-131 473.8 412 56.1
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 3.0e-131 473.0 488 52.7
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 8.6e-131 471.5 487 51.7
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 8.6e-131 471.5 488 52.5
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 8.6e-131 471.5 487 51.7
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 8.6e-131 471.5 487 51.7
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 8.6e-131 471.5 439 55.4
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 8.6e-131 471.5 482 51.7
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 1.5e-130 470.7 421 57.0
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 5.6e-130 468.8 434 53.7
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 2.1e-129 466.8 453 54.3
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 2.8e-129 466.5 447 54.1
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.8e-129 466.5 453 54.5
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 3.6e-129 466.1 452 54.2
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.8e-128 461.8 453 54.3
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 2.0e-127 460.3 448 55.6
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 5.8e-127 458.8 432 55.6
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 9.9e-127 458.0 345 66.4
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 6.4e-126 455.3 434 53.9
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 3.5e-124 449.5 490 51.8
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 1.7e-123 447.2 492 50.8
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 2.4e-120 436.8 496 49.4
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 2.4e-120 436.8 406 55.7
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 4.4e-119 432.6 417 53.7
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 9.9e-119 431.4 373 58.7
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 2.3e-115 420.2 424 50.7
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 4.3e-114 416.0 370 57.3
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 4.3e-114 416.0 374 56.7
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 2.7e-108 396.7 418 48.3
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 2.3e-107 393.7 416 50.7
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 4.5e-103 379.4 326 58.3
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 3.5e-100 369.8 405 50.4
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 3.4e-95 353.2 360 52.2
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.1e-80 303.5 220 65.5
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 4.4e-74 283.1 220 61.8
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.1e-69 268.5 298 51.7
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 1.6e-68 264.6 230 58.3
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.8e-64 251.1 272 52.2
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 4.2e-61 240.0 338 42.0
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 5.5e-61 239.6 307 47.6
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 5.4e-56 223.0 263 48.3
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 2.0e-55 221.1 330 40.6
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 3.2e-53 213.8 116 90.5
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.0e-46 192.2 445 34.8
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 5.0e-46 189.9 457 31.3
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 3.6e-36 157.1 265 39.6
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.4e-32 145.2 184 46.7
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 1.5e-26 125.2 113 57.5
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 7.5e-26 122.9 312 29.5
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 8.3e-25 119.4 133 49.6
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.6e-23 115.2 99 56.6
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 3.3e-21 107.5 123 48.0
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 2.3e-19 101.3 213 31.9
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.6e-15 88.6 99 48.5
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.7e-15 87.8 159 42.1
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 1.8e-11 75.1 460 22.4
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 6.8e-11 73.2 47 63.8
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 8.4e-09 66.2 52 63.5
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 1.0e-06 59.3 35 77.1


User provided reference genes

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