Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G140.39 Capsicum annuum HOM05D000390 ORTHO05D028467 5.2e-65 250.8 115 100.0
CAN.G140.35 Capsicum annuum HOM05D000390 ORTHO05D000577 3.7e-26 121.7 73 75.3
CAN.G140.45 Capsicum annuum HOM05D000390 ORTHO05D000577 2.0e-24 115.9 73 71.2
PGSC0003DMG401032194 Solanum tuberosum HOM05D000390 ORTHO05D000577 2.2e-23 112.5 73 68.5
PGSC0003DMG402032194 Solanum tuberosum HOM05D000390 ORTHO05D028467 2.2e-23 112.5 73 68.5
Solyc01g006190.3 Solanum lycopersicum HOM05D000390 ORTHO05D000577 2.9e-23 112.1 73 68.5
Sopen01g002200 Solanum pennellii HOM05D000390 ORTHO05D000577 2.9e-23 112.1 73 68.5
Nitab4.5_0005132g0100 Nicotiana tabacum HOM05D000390 ORTHO05D000577 5.0e-23 111.3 73 65.8
Nitab4.5_0001568g0030 Nicotiana tabacum HOM05D000390 ORTHO05D000577 3.2e-22 108.6 73 64.4
Peaxi162Scf00441g00057 Petunia axillaris HOM05D000390 ORTHO05D000577 1.2e-21 106.7 74 67.6
PGSC0003DMG400011785 Solanum tuberosum HOM05D000390 ORTHO05D028467 8.7e-20 100.5 68 66.2
Nitab4.5_0003555g0030 Nicotiana tabacum HOM05D000390 ORTHO05D000577 1.9e-19 99.4 75 61.3
CAN.G575.16 Capsicum annuum HOM05D000390 ORTHO05D000577 5.7e-19 97.8 75 60.0
PGSC0003DMG400004288 Solanum tuberosum HOM05D000390 ORTHO05D000577 1.1e-17 93.6 71 59.2
Peaxi162Scf00062g01914 Petunia axillaris HOM05D000390 ORTHO05D000577 3.1e-17 92.0 75 54.7
CAN.G140.32 Capsicum annuum HOM05D000390 ORTHO05D000577 2.9e-15 85.5 73 56.2
Dinv36334 Davidia involucrata HOM05D002613 ORTHO05D003140 2.9e-15 85.5 73 49.3
Actinidia06860 Actinidia chinensis HOM05D000390 ORTHO05D000577 1.9e-14 82.8 73 49.3
Actinidia16275 Actinidia chinensis HOM05D000390 ORTHO05D000577 2.5e-14 82.4 73 49.3
Dinv09747 Davidia involucrata HOM05D000390 ORTHO05D000577 3.2e-14 82.0 73 50.7
CSS0003675 Camellia sinensis var. sinensis HOM05D000390 ORTHO05D000577 5.5e-14 81.3 74 51.4
Cc01_g01850 Coffea canephora HOM05D000390 ORTHO05D000577 1.1e-11 73.6 107 33.6
Gohir.A13G005500 Gossypium hirsutum HOM05D000390 ORTHO05D000577 7.4e-11 70.9 111 35.1
Lj1A461G26 Lonicera japonica HOM05D000390 ORTHO05D000577 7.4e-11 70.9 71 52.1
GSVIVG01025381001 Vitis vinifera HOM05D000390 ORTHO05D000577 1.3e-10 70.1 73 39.7
COL.COLO4_34000 Corchorus olitorius HOM05D000390 ORTHO05D000577 2.2e-10 69.3 73 41.1
MSTRG.20955 Avicennia marina HOM05D000390 ORTHO05D000577 6.3e-10 67.8 71 40.8
Potri.006G194100 Populus trichocarpa HOM05D000390 ORTHO05D000577 8.2e-10 67.4 73 43.8
Migut.D02527 Erythranthe guttata HOM05D000390 ORTHO05D000577 1.1e-09 67.0 73 41.1
Gohir.A10G182100 Gossypium hirsutum HOM05D000390 ORTHO05D000577 1.4e-09 66.6 73 38.4
Gohir.D10G188900 Gossypium hirsutum HOM05D000390 ORTHO05D000577 1.4e-09 66.6 73 38.4
Gorai.011G212100 Gossypium raimondii HOM05D000390 ORTHO05D000577 1.4e-09 66.6 73 38.4
Thecc.10G172100 Theobroma cacao HOM05D000390 ORTHO05D000577 1.4e-09 66.6 73 41.1
Duzib128G1860 Durio zibethinus HOM05D000390 ORTHO05D000577 1.8e-09 66.2 73 39.7
Sabra06G0148900 Salix brachista HOM05D000390 ORTHO05D000633 3.1e-09 65.5 73 42.5
Gohir.A13G005450 Gossypium hirsutum HOM05D000390 ORTHO05D000577 5.3e-09 64.7 73 38.4
Gohir.D13G005200 Gossypium hirsutum HOM05D000390 ORTHO05D000577 5.3e-09 64.7 73 38.4
Gorai.013G005700 Gossypium raimondii HOM05D000390 ORTHO05D000577 5.3e-09 64.7 73 38.4
Ciclev10016045m.g Citrus clementina HOM05D000390 ORTHO05D000577 6.9e-09 64.3 73 39.7
Dinv16367 Davidia involucrata HOM05D000390 ORTHO05D001669 6.9e-09 64.3 73 39.7
MBI19_g17422_MAGBIO Magnolia biondii HOM05D000390 ORTHO05D000577 6.9e-09 64.3 73 38.4
vmacro04252 Vaccinium macrocarpon HOM05D000390 ORTHO05D000577 6.9e-09 64.3 73 39.7
MSTRG.18855 Avicennia marina HOM05D000390 ORTHO05D000577 9.1e-09 63.9 73 41.1
GSVIVG01033473001 Vitis vinifera HOM05D000390 ORTHO05D000577 1.2e-08 63.5 73 41.1
Duzib114G0408 Durio zibethinus HOM05D000390 ORTHO05D000577 1.5e-08 63.2 73 38.4
Gohir.D01G125000 Gossypium hirsutum HOM05D000390 ORTHO05D000577 7.7e-08 60.8 116 31.9
MD03G1012000 Malus domestica HOM05D000390 ORTHO05D000577 7.7e-08 60.8 73 35.6
PGSC0003DMG400025746 Solanum tuberosum HOM05D000390 ORTHO05D028467 7.7e-08 60.8 42 69.0
Duzib093G1079 Durio zibethinus HOM05D000390 ORTHO05D000577 1.7e-07 59.7 73 39.7
Rhsim13G0228200 Rhododendron simsii HOM05D000390 ORTHO05D000577 1.7e-07 59.7 69 39.1
Thecc.05G174600 Theobroma cacao HOM05D000390 ORTHO05D000577 1.7e-07 59.7 73 38.4
COL.COLO4_29355 Corchorus olitorius HOM05D000390 ORTHO05D000577 2.9e-07 58.9 73 38.4
Hma1.2p1_1478F.1_g286000 Hydrangea macrophylla HOM05D000390 ORTHO05D000577 2.9e-07 58.9 73 37.0
DCAR_019854 Daucus carota HOM05D000390 ORTHO05D000577 3.8e-07 58.5 73 38.4
Duzib128G1878 Durio zibethinus HOM05D000390 ORTHO05D000577 3.8e-07 58.5 73 37.0
Oeu058538.1 Olea europaea HOM05D000390 ORTHO05D000577 3.8e-07 58.5 40 55.0
THA.LOC104802638 Tarenaya hassleriana HOM05D000390 ORTHO05D000577 3.8e-07 58.5 73 38.4
Actinidia14372 Actinidia chinensis HOM05D000390 ORTHO05D000577 8.5e-07 57.4 73 35.6
Ca_12038_v3 Cicer arietinum L. HOM05D000390 ORTHO05D000577 8.5e-07 57.4 74 36.5
Ca_12042_v3 Cicer arietinum L. HOM05D000390 ORTHO05D000577 8.5e-07 57.4 74 36.5
Oeu057581.1 Olea europaea HOM05D000390 ORTHO05D000577 8.5e-07 57.4 73 37.0
CANSAT11G2116 Cannabis sativa HOM05D000390 ORTHO05D000577 1.1e-06 57.0 45 46.7
Prupe.6G012400 Prunus persica HOM05D000390 ORTHO05D000577 1.1e-06 57.0 73 34.2
RcHm_v2.0_Chr5g0081221 Rosa chinensis HOM05D000390 ORTHO05D000577 1.1e-06 57.0 73 34.2
Atru.chr8.1152 Acer truncatum HOM05D000390 ORTHO05D000577 1.4e-06 56.6 73 38.4
A07p23840 Brassica napus HOM05D000390 ORTHO05D000577 1.4e-06 56.6 111 33.3
C06p25050 Brassica napus HOM05D000390 ORTHO05D000577 1.4e-06 56.6 111 33.3
BolC6t37662H Brassica oleracea HOM05D000390 ORTHO05D000577 1.4e-06 56.6 111 33.3
BraA07t30037Z Brassica rapa HOM05D000390 ORTHO05D000577 1.4e-06 56.6 111 33.3
CSS0016160 Camellia sinensis var. sinensis HOM05D000390 ORTHO05D000633 1.9e-06 56.2 73 35.6
CARHR168360 Cardamine hirsuta HOM05D000390 ORTHO05D000577 1.9e-06 56.2 73 37.0
Manes.09G037200 Manihot esculenta HOM05D000390 ORTHO05D000577 1.9e-06 56.2 73 38.4
Potri.016G059700 Populus trichocarpa HOM05D000390 ORTHO05D000577 1.9e-06 56.2 73 37.0
CANSAT64G1772 Cannabis sativa HOM05D000390 ORTHO05D000577 2.5e-06 55.8 73 35.6
Duzib106G1738 Durio zibethinus HOM05D000390 ORTHO05D000577 2.5e-06 55.8 73 38.4
ECA238G2642 Erigeron canadensis HOM05D000390 ORTHO05D000577 2.5e-06 55.8 73 39.7
FAN25G3445 Fragaria x ananassa HOM05D000390 ORTHO05D000577 2.5e-06 55.8 73 32.9
Medtr7g093600 Medicago truncatula HOM05D000390 ORTHO05D000577 2.5e-06 55.8 75 37.3
PSO384G4710 Papaver somniferum HOM05D000390 ORTHO05D000577 2.5e-06 55.8 111 29.7
BcaB02g08280 Brassica carinata HOM05D000390 ORTHO05D000577 3.2e-06 55.5 114 31.6
FAN21G1472 Fragaria x ananassa HOM05D000390 ORTHO05D000577 3.2e-06 55.5 73 32.9
Lsat_1_v5_gn_2_101440 Lactuca sativa HOM05D000390 ORTHO05D000577 3.2e-06 55.5 73 37.0
A04p02750 Brassica napus HOM05D000390 ORTHO05D000577 4.2e-06 55.1 114 32.5
A09p50860 Brassica napus HOM05D000390 ORTHO05D000577 4.2e-06 55.1 114 33.3
BraA04t16001Z Brassica rapa HOM05D000390 ORTHO05D000577 4.2e-06 55.1 114 32.5
BraA09t40532Z Brassica rapa HOM05D000390 ORTHO05D000577 4.2e-06 55.1 114 33.3
Cpa.g.sc85.49 Carica papaya HOM05D000390 ORTHO05D000577 4.2e-06 55.1 73 34.2
Gohir.A01G137000 Gossypium hirsutum HOM05D000390 ORTHO05D000577 4.2e-06 55.1 73 38.4
Dinv24055 Davidia involucrata HOM05D000390 ORTHO05D000577 5.5e-06 54.7 56 41.1
Gohir.A01G190600 Gossypium hirsutum HOM05D000390 ORTHO05D000577 5.5e-06 54.7 79 34.2
Gorai.002G155600 Gossypium raimondii HOM05D000390 ORTHO05D000577 5.5e-06 54.7 73 38.4
Hma1.2p1_0972F.1_g242890 Hydrangea macrophylla HOM05D000390 ORTHO05D000577 5.5e-06 54.7 73 39.7
Medtr1g054335 Medicago truncatula HOM05D000390 ORTHO05D000577 5.5e-06 54.7 74 33.8
BcaC08g44890 Brassica carinata HOM05D000390 ORTHO05D000577 7.2e-06 54.3 111 33.3
MD11G1014900 Malus domestica HOM05D000390 ORTHO05D000577 7.2e-06 54.3 73 34.2
TWI74G0476 Tripterygium wilfordii HOM05D000390 ORTHO05D000577 7.2e-06 54.3 73 37.0
BcaC02g09984 Brassica carinata HOM05D000390 ORTHO05D000577 9.4e-06 53.9 114 32.5
C04p34330 Brassica napus HOM05D000390 ORTHO05D000577 9.4e-06 53.9 114 32.5
BolC4t24996H Brassica oleracea HOM05D000390 ORTHO05D000577 9.4e-06 53.9 114 32.5
PSO339G3937 Papaver somniferum HOM05D000390 ORTHO05D000577 9.4e-06 53.9 111 28.8
TPR.G13357 Trifolium pratense HOM05D000390 ORTHO05D000577 9.4e-06 53.9 75 36.0
TWI60G0425 Tripterygium wilfordii HOM05D000390 ORTHO05D000577 9.4e-06 53.9 73 34.2


User provided reference genes

Program Settings