Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G14.16 Capsicum annuum HOM05D002282 ORTHO05D002403 3.3e-167 591.7 300 100.0
Nitab4.5_0000378g0050 Nicotiana tabacum HOM05D002282 ORTHO05D002403 3.5e-137 491.9 298 83.2
Peaxi162Scf00065g01016 Petunia axillaris HOM05D002282 ORTHO05D002403 3.0e-136 488.8 298 81.5
Nitab4.5_0001298g0020 Nicotiana tabacum HOM05D002282 ORTHO05D002403 3.3e-135 485.3 309 80.6
PGSC0003DMG400011805 Solanum tuberosum HOM05D002282 ORTHO05D002403 7.6e-132 474.2 298 80.2
Solyc02g030080.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 2.7e-129 465.7 298 79.5
Sopen02g009400 Solanum pennellii HOM05D002282 ORTHO05D002403 1.7e-128 463.0 298 78.9
CAN.G306.6 Capsicum annuum HOM05D002282 ORTHO05D002403 3.9e-128 461.8 293 79.5
Nitab4.5_0004432g0020 Nicotiana tabacum HOM05D002282 ORTHO05D002403 3.8e-107 392.1 312 67.3
Cc03_g01330 Coffea canephora HOM05D002282 ORTHO05D002403 2.0e-84 316.6 293 53.6
Dinv29708 Davidia involucrata HOM05D002282 ORTHO05D002403 3.2e-82 309.3 320 50.3
Oeu006431.1 Olea europaea HOM05D002282 ORTHO05D002403 4.2e-82 308.9 298 54.0
CSS0020497 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 3.6e-81 305.8 318 50.3
MSTRG.10121 Avicennia marina HOM05D002282 ORTHO05D002403 2.8e-78 296.2 293 52.9
Lj3A826G75 Lonicera japonica HOM05D002282 ORTHO05D002403 4.8e-78 295.4 297 52.2
Lj5A688G9 Lonicera japonica HOM05D002282 ORTHO05D002403 4.8e-78 295.4 298 52.0
vmacro02293 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 8.2e-78 294.7 329 46.2
DCAR_027041 Daucus carota HOM05D002282 ORTHO05D002403 2.7e-76 289.7 298 51.7
Migut.G00119 Erythranthe guttata HOM05D002282 ORTHO05D002403 1.0e-75 287.7 293 52.2
TAR365G0623 Trochodendron aralioides HOM05D002282 ORTHO05D002403 8.5e-75 284.6 320 48.1
GSVIVG01035079001 Vitis vinifera HOM05D002282 ORTHO05D002403 1.1e-74 284.3 318 47.5
Rhsim02G0006600 Rhododendron simsii HOM05D002282 ORTHO05D002403 4.7e-73 278.9 339 44.8
ECA240G0914 Erigeron canadensis HOM05D002282 ORTHO05D002403 1.4e-72 277.3 298 47.0
HanXRQChr03g0084951 Helianthus annuus HOM05D002282 ORTHO05D002403 1.5e-71 273.9 296 45.9
FAN09G1184 Fragaria x ananassa HOM05D002282 ORTHO05D002403 4.8e-70 268.9 321 48.3
CiPaw.01G144200 Carya illinoinensis HOM05D002282 ORTHO05D002403 6.3e-70 268.5 317 47.6
RcHm_v2.0_Chr4g0423831 Rosa chinensis HOM05D002282 ORTHO05D002403 1.4e-69 267.3 321 49.2
FAN02G0515 Fragaria x ananassa HOM05D002282 ORTHO05D002403 4.1e-69 265.8 321 49.2
Prupe.1G129200 Prunus persica HOM05D002282 ORTHO05D002403 5.4e-69 265.4 318 48.4
Haze_01137 Corylus avellana HOM05D002282 ORTHO05D002403 7.0e-69 265.0 314 47.1
QL06p010943 Quercus lobata HOM05D002282 ORTHO05D002403 9.1e-69 264.6 314 48.4
FAN05G0042 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.0e-68 263.5 321 48.3
Cfa015451 Carpinus fangiana HOM05D002282 ORTHO05D002403 7.7e-68 261.5 317 46.4
Cfa006257 Carpinus fangiana HOM05D002282 ORTHO05D004557 2.2e-67 260.0 318 46.2
Lsat_1_v5_gn_6_76141 Lactuca sativa HOM05D002282 ORTHO05D002403 5.0e-67 258.8 298 47.3
Haze_04567 Corylus avellana HOM05D002282 ORTHO05D002403 1.9e-66 256.9 318 45.9
Ciclev10004544m.g Citrus clementina HOM05D002282 ORTHO05D002403 2.5e-66 256.5 317 45.4
Glyma.07G244100 Glycine max HOM05D002282 ORTHO05D002403 2.5e-66 256.5 312 45.5
unitig_37.g12403 Utricularia gibba HOM05D002282 ORTHO05D002403 2.5e-66 256.5 297 48.1
arahy.Tifrunner.gnm1.ann1.3PI56D Arachis hypogaea HOM05D002282 ORTHO05D002403 7.2e-66 255.0 307 46.6
arahy.Tifrunner.gnm1.ann1.C0TKG5 Arachis hypogaea HOM05D002282 ORTHO05D002403 7.2e-66 255.0 311 46.6
SGA_v2.0_scaffold146G36232 Striga asiatica HOM05D002282 ORTHO05D002403 7.2e-66 255.0 293 47.4
Potri.010G005400 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.6e-65 253.8 309 47.9
Actinidia14272 Actinidia chinensis HOM05D002282 ORTHO05D002403 4.7e-65 252.3 285 48.8
MD13G1161900 Malus domestica HOM05D002282 ORTHO05D002403 1.8e-64 250.4 318 45.6
MD16G1161700 Malus domestica HOM05D002282 ORTHO05D002403 5.2e-64 248.8 318 45.3
Lj4g0005439 Lotus japonicus HOM05D002282 ORTHO05D002403 6.8e-64 248.4 312 43.6
Lj4g0022588 Lotus japonicus HOM05D002282 ORTHO05D002403 6.8e-64 248.4 312 43.6
Sabra10G0004600 Salix brachista HOM05D002282 ORTHO05D002403 6.8e-64 248.4 310 46.8
Hund11944 Selenicereus undatus HOM05D002282 ORTHO05D002403 1.2e-63 247.7 283 45.9
Lalb_Chr12g0201081 Lupinus albus HOM05D002282 ORTHO05D002403 2.0e-63 246.9 309 45.3
CANSAT35G1122 Cannabis sativa HOM05D002282 ORTHO05D002403 2.6e-63 246.5 308 44.2
Glyma.17G029800 Glycine max HOM05D002282 ORTHO05D002403 2.6e-63 246.5 312 44.9
Carub.0006s0971 Capsella rubella HOM05D002282 ORTHO05D002403 3.4e-63 246.1 300 46.0
VMungo1215G3370 Vigna mungo HOM05D002282 ORTHO05D002403 5.7e-63 245.4 310 44.8
TWI09G1448 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 7.5e-63 245.0 317 43.8
Phvul.003G108800 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 9.8e-63 244.6 312 43.9
MBI19_g05149_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 1.7e-62 243.8 323 44.3
Sed0017061 Sechium edule HOM05D002282 ORTHO05D002403 6.3e-62 241.9 313 43.5
ClCG06G004860 Citrullus lanatus HOM05D002282 ORTHO05D002403 1.8e-61 240.4 313 44.7
AL6G21870 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 2.4e-61 240.0 303 45.2
PGR031G2323 Punica granatum HOM05D002282 ORTHO05D002403 3.1e-61 239.6 311 43.7
Thecc.04G291300 Theobroma cacao HOM05D002282 ORTHO05D002403 5.4e-61 238.8 317 43.5
A10p26480 Brassica napus HOM05D002282 ORTHO05D002403 7.0e-61 238.4 302 45.0
BraA10t44705Z Brassica rapa HOM05D002282 ORTHO05D002403 7.0e-61 238.4 302 45.0
Gorai.006G077500 Gossypium raimondii HOM05D002282 ORTHO05D002403 9.2e-61 238.0 319 43.3
Manes.15G008900 Manihot esculenta HOM05D002282 ORTHO05D002403 1.2e-60 237.7 314 44.3
PSO407G0173 Papaver somniferum HOM05D002282 ORTHO05D002403 1.2e-60 237.7 326 42.6
vmacro13795 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 2.0e-60 236.9 291 44.0
CsaV3_6G022650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 2.7e-60 236.5 313 43.5
Medtr4g120740 Medicago truncatula HOM05D002282 ORTHO05D002403 5.9e-60 235.3 312 41.3
Eucgr.A01301 Eucalyptus grandis HOM05D002282 ORTHO05D002403 1.3e-59 234.2 319 42.9
Nn8g40612 Nelumbo nucifera HOM05D002282 ORTHO05D002403 1.3e-59 234.2 323 42.7
Psat4g024880 Pisum sativum HOM05D002282 ORTHO05D002403 1.7e-59 233.8 310 41.9
Cpa.g.sc9.113 Carica papaya HOM05D002282 ORTHO05D002403 2.3e-59 233.4 319 43.6
MELO3C021295.2 Cucumis melo HOM05D002282 ORTHO05D002403 2.3e-59 233.4 313 43.5
Thhalv10012983m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 2.3e-59 233.4 304 44.4
Gohir.D09G062700 Gossypium hirsutum HOM05D002282 ORTHO05D002403 2.3e-59 233.4 319 42.6
BcaNung01920 Brassica carinata HOM05D002282 ORTHO05D002403 3.8e-59 232.6 301 42.9
Sc19g0003390 Simmondsia chinensis HOM05D002282 ORTHO05D002403 3.8e-59 232.6 265 44.9
Gohir.A09G063800 Gossypium hirsutum HOM05D002282 ORTHO05D002403 5.0e-59 232.3 319 42.9
BcaB08g37077 Brassica carinata HOM05D002282 ORTHO05D002403 6.6e-59 231.9 301 43.5
A02p00910 Brassica napus HOM05D002282 ORTHO05D002403 6.6e-59 231.9 302 44.7
THA.LOC104805829 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 8.6e-59 231.5 316 44.0
AT5G11240 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 1.1e-58 231.1 304 45.1
Sp6g32320 Schrenkiella parvula HOM05D002282 ORTHO05D002403 3.3e-58 229.6 301 42.9
AUR62035074 Chenopodium quinoa HOM05D002282 ORTHO05D002403 7.3e-58 228.4 303 41.9
AUR62016160 Chenopodium quinoa HOM05D002282 ORTHO05D002403 1.2e-57 227.6 297 41.8
TPR.G4827 Trifolium pratense HOM05D002282 ORTHO05D002403 1.2e-57 227.6 289 42.9
BraA02t05075Z Brassica rapa HOM05D002282 ORTHO05D002403 3.6e-57 226.1 303 43.6
Ca_21469_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 4.7e-57 225.7 312 40.1
BcaC04g19248 Brassica carinata HOM05D002282 ORTHO05D002403 8.0e-57 224.9 301 41.9
C09p65630 Brassica napus HOM05D002282 ORTHO05D002403 8.0e-57 224.9 301 41.9
BolC9t59386H Brassica oleracea HOM05D002282 ORTHO05D002403 8.0e-57 224.9 301 41.9
FvH4_6g31810 Fragaria vesca HOM05D002282 ORTHO05D002403 1.8e-56 223.8 277 48.0
Aqoxy7G01538 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 2.6e-55 219.9 330 41.5
EL10Ac3g04935 Beta vulgaris HOM05D002282 ORTHO05D002403 1.3e-54 217.6 302 39.1
Actinidia13377 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.1e-53 214.5 285 43.2
PSO170G5250 Papaver somniferum HOM05D002282 ORTHO05D002403 1.1e-53 214.5 320 41.6
Atru.chr4.2932 Acer truncatum HOM05D002282 ORTHO05D002403 3.2e-53 213.0 269 47.6
Ah.04g155130 Amaranthus hybridus HOM05D002282 ORTHO05D002403 9.2e-53 211.5 317 38.5
COL.COLO4_34694 Corchorus olitorius HOM05D002282 ORTHO05D002403 9.5e-50 201.4 258 45.7
CDE05G3405 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 1.2e-49 201.1 307 40.4
Os03g0300300 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 3.4e-47 193.0 304 37.8
HPP92_021476 Vanilla planifolia HOM05D002282 ORTHO05D002403 9.8e-47 191.4 321 38.3
Aa31LG3G15950 Aethionema arabicum HOM05D002282 ORTHO05D002403 6.4e-46 188.7 372 36.0
Zm00001eb013980 Zea mays HOM05D002282 ORTHO05D002403 2.4e-45 186.8 312 39.4
Actinidia02885 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.7e-43 180.6 212 47.2
MSTRG.21910 Avicennia marina HOM05D002282 ORTHO05D002403 2.2e-38 163.7 139 56.1
Duzib052G0572 Durio zibethinus HOM05D002282 ORTHO05D002403 2.3e-35 153.7 317 34.7
FAN14G3556 Fragaria x ananassa HOM05D002282 ORTHO05D002403 3.0e-35 153.3 161 52.8
ATR0693G215 Amborella trichopoda HOM05D002282 ORTHO05D002403 5.1e-35 152.5 331 31.7
CDE11G1255 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 1.1e-34 151.4 296 35.5
CARHR202090 Cardamine hirsuta HOM05D002282 ORTHO05D002403 9.9e-31 138.3 203 40.9
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 5.4e-29 132.5 338 31.4
SalBow2G2202 Salvia bowleyana HOM05D002282 ORTHO05D002403 2.9e-22 110.2 116 52.6
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 1.9e-10 70.9 308 23.7
SMO361G0163 Selaginella moellendorffii HOM05D002282 ORTHO05D002403 5.6e-10 69.3 209 30.1
Eucgr.A01314 Eucalyptus grandis HOM05D002282 ORTHO05D002403 2.1e-09 67.4 65 46.2
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 6.2e-09 65.9 317 25.6
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 8.1e-09 65.5 330 24.8
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 8.1e-09 65.5 323 22.9
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 5.3e-08 62.8 319 21.9
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 1.2e-07 61.6 351 23.6
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 1.5e-07 61.2 300 23.3
AUR62044456 Chenopodium quinoa HOM05D002282 ORTHO05D002403 3.8e-06 56.6 96 41.7


User provided reference genes

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