Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 1.7e-224 782.3 385 100.0
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 3.5e-166 588.6 385 77.4
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 2.2e-144 516.2 371 70.1
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 4.2e-143 511.9 371 69.8
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 6.5e-136 488.0 309 80.3
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 2.5e-127 459.5 388 62.4
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 1.8e-117 426.8 385 57.9
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 1.7e-115 420.2 282 69.5
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 1.2e-113 414.1 372 57.5
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 9.5e-111 404.4 302 66.2
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 1.0e-109 401.0 293 66.2
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 3.4e-108 396.0 394 54.8
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 3.7e-107 392.5 391 53.7
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 1.4e-106 390.6 420 53.8
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 1.4e-106 390.6 412 50.7
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 1.6e-105 387.1 420 53.3
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.6e-105 387.1 374 54.8
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 4.6e-105 385.6 300 64.3
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 1.3e-104 384.0 296 61.8
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 1.5e-103 380.6 381 54.9
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 1.9e-103 380.2 367 55.0
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 7.3e-103 378.3 387 53.2
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 9.5e-103 377.9 292 64.4
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 1.2e-102 377.5 331 58.3
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 1.1e-101 374.4 416 49.8
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 1.1e-101 374.4 423 49.6
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.3e-101 373.2 291 62.5
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 2.3e-101 373.2 421 50.1
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 4.0e-101 372.5 291 62.5
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 5.2e-101 372.1 415 51.3
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 8.9e-101 371.3 291 62.2
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 1.2e-100 370.9 364 53.3
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 1.5e-100 370.5 401 51.9
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 1.5e-100 370.5 456 45.0
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.6e-100 369.8 291 62.2
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 4.4e-100 369.0 382 51.8
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 5.8e-100 368.6 366 54.4
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 7.5e-100 368.2 367 53.7
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 9.8e-100 367.9 315 60.0
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 9.8e-100 367.9 293 62.5
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.3e-99 367.5 291 61.9
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 1.7e-99 367.1 381 51.7
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 6.4e-99 365.2 480 43.1
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 1.1e-98 364.4 400 49.2
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 5.4e-98 362.1 393 50.9
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.6e-97 360.5 299 61.2
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 4.6e-97 359.0 378 53.7
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.8e-97 358.2 274 61.7
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 1.3e-96 357.5 311 59.2
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 2.3e-96 356.7 297 57.9
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 2.3e-96 356.7 418 49.3
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 5.0e-96 355.5 298 60.7
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 6.6e-96 355.1 381 50.7
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 6.6e-96 355.1 283 61.5
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 1.1e-95 354.4 403 49.1
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 3.3e-95 352.8 384 50.3
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 4.3e-95 352.4 299 59.9
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 5.6e-95 352.1 286 62.2
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 5.6e-95 352.1 299 60.2
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 9.5e-95 351.3 291 58.8
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 9.5e-95 351.3 374 52.7
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 9.5e-95 351.3 244 73.4
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 2.1e-94 350.1 324 56.8
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 2.8e-94 349.7 378 51.3
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 2.8e-94 349.7 398 50.0
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 4.7e-94 349.0 291 58.4
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 4.7e-94 349.0 284 59.9
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 1.4e-93 347.4 380 52.6
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 1.4e-93 347.4 290 59.7
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 1.8e-93 347.1 282 61.0
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 1.8e-93 347.1 381 50.1
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 5.2e-93 345.5 299 59.2
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 5.2e-93 345.5 299 59.2
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 5.2e-93 345.5 393 48.6
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 5.2e-93 345.5 284 59.2
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 2.0e-92 343.6 427 46.1
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 2.6e-92 343.2 367 51.8
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 3.4e-92 342.8 384 48.2
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 7.5e-92 341.7 370 48.9
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 1.3e-91 340.9 295 59.7
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 8.3e-91 338.2 298 58.4
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 8.3e-91 338.2 298 58.4
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 8.3e-91 338.2 304 57.6
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.4e-90 336.7 304 57.6
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 3.2e-90 336.3 283 57.6
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 9.2e-90 334.7 383 50.9
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 7.8e-89 331.6 407 46.9
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 7.8e-89 331.6 402 47.5
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 6.6e-88 328.6 394 48.7
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 1.1e-87 327.8 353 53.0
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 2.5e-87 326.6 300 56.7
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 2.1e-86 323.6 359 50.4
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 2.8e-86 323.2 301 56.1
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 3.6e-86 322.8 305 57.0
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 8.1e-86 321.6 309 55.0
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 2.4e-85 320.1 280 60.0
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 2.4e-85 320.1 283 58.7
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 1.5e-84 317.4 411 45.5
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 2.6e-84 316.6 280 59.6
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 2.6e-84 316.6 280 59.6
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 1.7e-83 313.9 397 46.1
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 5.4e-82 308.9 281 58.4
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 7.1e-82 308.5 281 58.4
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 7.1e-82 308.5 380 47.1
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 2.1e-81 307.0 395 47.3
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 7.8e-81 305.1 384 45.8
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 1.7e-80 303.9 259 57.5
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 2.3e-80 303.5 409 43.8
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 1.2e-78 297.7 369 47.2
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 1.5e-76 290.8 412 43.4
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 4.4e-76 289.3 237 58.6
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 1.4e-74 284.3 252 56.7
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 3.2e-74 283.1 323 46.7
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 9.6e-71 271.6 310 48.7
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 6.2e-70 268.9 400 42.2
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 2.7e-65 253.4 310 46.5
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 3.9e-64 249.6 160 79.4
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.4e-61 241.1 169 67.5
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 1.3e-59 234.6 321 43.6
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 2.2e-59 233.8 167 67.7
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 2.9e-59 233.4 223 56.1
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 8.4e-59 231.9 188 60.6
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 3.9e-56 223.0 277 43.7
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.5e-55 221.1 173 61.3
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 4.6e-49 199.5 280 38.9
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 1.0e-48 198.4 278 38.5
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 3.9e-48 196.4 297 39.1
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 2.2e-43 180.6 137 62.8
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 7.9e-41 172.2 297 36.4
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 3.9e-40 169.9 277 36.1
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 3.7e-38 163.3 274 36.5
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 6.9e-37 159.1 220 41.8
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.5e-36 157.9 127 59.1
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.4e-34 151.4 98 68.4
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 4.1e-29 133.3 186 44.6
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.0e-28 131.0 98 63.3
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 3.4e-28 130.2 179 41.9
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 4.5e-28 129.8 179 41.3
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 8.5e-27 125.6 97 62.9
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 4.2e-26 123.2 95 62.1
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 1.4e-24 118.2 67 74.6
Nitab4.5_0003792g0060 Nicotiana tabacum HOM05D004413 ORTHO05D005199 2.4e-21 107.5 145 48.3
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.7e-20 102.4 63 66.7
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 2.9e-19 100.5 72 62.5
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 3.8e-19 100.1 108 49.1
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 3.2e-18 97.1 75 62.7
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 9.4e-18 95.5 265 27.9
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.7e-17 93.2 86 48.8
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 2.3e-16 90.9 99 48.5
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 6.7e-16 89.4 92 52.2
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 2.0e-15 87.8 96 49.0
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 3.3e-15 87.0 317 24.9
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 2.2e-14 84.3 186 32.3
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 9.1e-13 79.0 49 61.2
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.3e-11 75.1 53 64.2
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.9e-11 73.9 53 62.3
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.5e-11 72.4 165 37.6
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.1e-10 72.0 50 58.0
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.5e-07 59.3 49 55.1


User provided reference genes

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