Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 2.0e-165 585.9 343 100.0
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 8.7e-132 474.2 361 79.2
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 3.6e-130 468.8 361 78.7
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 4.9e-111 405.2 358 71.2
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 7.2e-94 348.2 319 65.8
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 7.9e-93 344.7 307 71.3
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 2.3e-84 316.6 253 73.9
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 3.3e-83 312.8 336 59.8
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 1.4e-81 307.4 291 70.4
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 1.0e-79 301.2 260 69.6
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 1.3e-79 300.8 272 66.2
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 7.2e-78 295.0 196 81.6
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 9.4e-78 294.7 329 56.8
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 2.1e-77 293.5 352 57.1
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 2.1e-77 293.5 253 69.2
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 2.7e-77 293.1 314 59.6
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 5.2e-76 288.9 325 57.5
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 2.0e-75 287.0 272 64.0
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 7.5e-75 285.0 249 63.1
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 7.5e-75 285.0 274 63.5
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 7.5e-75 285.0 338 55.0
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 9.7e-75 284.6 319 58.0
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 1.7e-74 283.9 268 63.1
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 2.8e-74 283.1 339 54.3
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 1.1e-73 281.2 247 68.0
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 2.4e-73 280.0 304 60.9
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 7.0e-73 278.5 323 56.3
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 9.1e-73 278.1 326 54.3
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 1.2e-72 277.7 194 75.3
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 3.5e-72 276.2 259 66.0
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 3.5e-72 276.2 328 54.6
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 4.5e-72 275.8 342 57.3
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.0e-71 274.6 327 55.7
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 1.3e-71 274.2 208 69.2
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 5.0e-71 272.3 332 53.0
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 8.5e-71 271.6 340 53.2
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.1e-70 271.2 326 54.6
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.1e-70 271.2 326 54.6
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 1.5e-70 270.8 318 56.0
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 9.4e-70 268.1 326 54.0
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 4.7e-69 265.8 255 62.0
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 8.0e-69 265.0 335 51.3
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 2.3e-68 263.5 341 52.2
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 5.2e-68 262.3 348 48.9
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 2.6e-67 260.0 176 73.3
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 5.7e-67 258.8 357 50.7
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 5.7e-67 258.8 363 50.4
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.3e-66 257.7 341 51.3
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 2.8e-66 256.5 190 68.9
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 3.7e-66 256.1 325 53.8
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 4.8e-66 255.8 208 64.9
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 6.3e-66 255.4 172 75.0
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 8.3e-66 255.0 172 73.8
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 1.8e-65 253.8 355 50.4
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 2.4e-65 253.4 174 73.0
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 3.1e-65 253.1 176 71.0
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 4.1e-65 252.7 177 71.2
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 4.1e-65 252.7 177 71.2
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 4.1e-65 252.7 177 71.2
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 9.1e-65 251.5 366 48.1
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 1.6e-64 250.8 309 52.1
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 1.6e-64 250.8 311 55.9
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 1.6e-64 250.8 172 71.5
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.6e-64 250.8 324 52.8
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 2.0e-64 250.4 213 64.8
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.7e-64 250.0 172 74.4
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 4.5e-64 249.2 172 75.0
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 5.9e-64 248.8 174 71.3
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 3.3e-62 243.0 357 49.3
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 7.2e-62 241.9 322 50.3
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 7.2e-62 241.9 359 51.5
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 9.5e-62 241.5 181 68.5
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 1.2e-61 241.1 348 48.9
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 1.6e-61 240.7 176 70.5
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 2.8e-61 240.0 174 70.7
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 3.6e-61 239.6 180 69.4
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 1.4e-60 237.7 227 63.4
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 1.4e-60 237.7 161 76.4
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 4.0e-60 236.1 189 65.1
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 8.9e-60 235.0 190 65.3
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 7.5e-59 231.9 174 72.4
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 4.9e-58 229.2 226 63.7
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 8.3e-58 228.4 177 67.2
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 1.1e-57 228.0 174 71.8
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 1.8e-57 227.3 194 63.9
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.8e-57 227.3 194 63.9
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 2.7e-56 223.4 165 72.7
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 1.0e-55 221.5 174 70.1
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 8.6e-55 218.4 182 65.4
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.9e-54 217.2 178 65.7
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 2.5e-54 216.9 182 63.7
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 3.3e-54 216.5 299 52.5
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 1.2e-53 214.5 297 51.9
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 4.7e-53 212.6 182 68.1
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 4.0e-52 209.5 185 62.2
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 2.9e-50 203.4 305 48.9
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 6.4e-50 202.2 168 63.1
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 7.8e-48 195.3 162 64.2
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 1.3e-47 194.5 124 79.0
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 1.7e-47 194.1 308 45.8
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 3.9e-47 193.0 168 61.9
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 1.9e-46 190.7 148 67.6
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 1.9e-46 190.7 148 67.6
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 2.6e-43 180.3 187 54.0
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 3.4e-43 179.9 194 55.7
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 7.5e-43 178.7 104 86.5
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 6.2e-37 159.1 124 71.0
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 3.1e-36 156.8 119 71.4
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 4.0e-28 129.8 113 64.6
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 5.8e-27 125.9 180 42.8
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 9.9e-27 125.2 175 43.4
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 2.1e-24 117.5 71 81.7
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 2.3e-23 114.0 64 90.6
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 1.9e-22 110.9 106 60.4
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 2.9e-18 97.1 209 44.5
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 4.2e-17 93.2 73 68.5
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 9.3e-17 92.0 139 54.0
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 3.0e-15 87.0 116 58.6
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 2.1e-13 80.9 130 49.2
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 1.1e-12 78.6 94 47.9
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 1.4e-12 78.2 232 34.9
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.4e-12 77.4 40 90.0
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 9.0e-12 75.5 39 89.7
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 1.2e-11 75.1 107 47.7
Oeu007005.1 Olea europaea HOM05D006300 ORTHO05D007623 2.0e-11 74.3 59 67.8
arahy.Tifrunner.gnm1.ann1.24L57E Arachis hypogaea HOM05D006300 ORTHO05D007623 4.2e-09 66.6 76 55.3


User provided reference genes

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