Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 4.2e-153 544.7 277 100.0
CAN.G732.35 Capsicum annuum HOM05D003640 ORTHO05D004439 4.5e-78 295.4 199 81.9
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 7.4e-73 278.1 205 74.6
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 2.2e-61 240.0 206 67.5
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 2.4e-55 219.9 211 62.6
CAN.G358.52 Capsicum annuum HOM05D003640 ORTHO05D004439 8.8e-50 201.4 267 48.3
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 1.1e-49 201.1 175 65.1
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 1.1e-49 201.1 190 64.2
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 8.5e-29 131.7 205 43.4
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 2.1e-27 127.1 209 41.6
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 3.6e-27 126.3 204 39.7
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 2.8e-24 116.7 205 40.5
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 3.7e-24 116.3 206 40.3
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 2.4e-23 113.6 207 39.6
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 3.1e-23 113.2 204 39.7
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 7.7e-22 108.6 210 36.7
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 5.0e-21 105.9 206 36.4
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 6.5e-21 105.5 210 36.2
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 8.5e-21 105.1 207 35.3
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 1.5e-20 104.4 213 37.6
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 1.9e-20 104.0 213 38.0
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 2.5e-20 103.6 201 36.3
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 3.2e-20 103.2 205 37.6
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 7.2e-20 102.1 205 36.1
CAN.G300.4 Capsicum annuum HOM05D000541 ORTHO05D000137 9.5e-20 101.7 73 71.2
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 2.1e-19 100.5 204 35.8
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.0e-18 98.2 213 38.0
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.4e-18 97.8 213 38.0
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.8e-18 97.4 210 34.3
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 3.0e-18 96.7 213 37.6
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 6.8e-18 95.5 211 36.0
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 8.8e-18 95.1 214 37.4
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.0e-17 94.0 213 36.6
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 2.0e-17 94.0 210 32.9
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 3.4e-17 93.2 209 34.9
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 4.4e-17 92.8 204 35.3
CAN.G125.22 Capsicum annuum HOM05D001472 ORTHO05D004439 5.7e-17 92.4 106 54.7
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 2.8e-16 90.1 211 35.1
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 4.9e-16 89.4 208 34.1
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 6.3e-16 89.0 212 37.3
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.8e-15 87.4 207 32.9
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 3.1e-15 86.7 205 34.1
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 3.1e-15 86.7 211 35.1
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 4.1e-15 86.3 211 30.8
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 4.1e-15 86.3 206 35.4
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 4.1e-15 86.3 210 34.8
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 5.4e-15 85.9 208 32.2
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 7.0e-15 85.5 212 33.5
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 9.2e-15 85.1 210 32.9
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 9.2e-15 85.1 208 35.1
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 1.6e-14 84.3 210 33.3
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.6e-14 84.3 208 35.1
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 2.7e-14 83.6 207 38.2
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 2.7e-14 83.6 209 32.5
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 3.5e-14 83.2 209 35.4
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 4.5e-14 82.8 206 34.5
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 5.9e-14 82.4 212 33.0
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 5.9e-14 82.4 228 33.3
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.3e-13 81.3 211 32.2
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.7e-13 80.9 209 31.6
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 2.3e-13 80.5 209 36.8
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 2.9e-13 80.1 211 34.1
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 3.8e-13 79.7 209 32.1
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 3.8e-13 79.7 209 33.0
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.0e-13 79.3 212 32.1
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 5.0e-13 79.3 209 30.6
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 6.6e-13 79.0 206 33.0
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 1.1e-12 78.2 215 33.0
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 1.1e-12 78.2 209 32.5
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 3.3e-12 76.6 216 33.8
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 5.6e-12 75.9 207 30.4
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 7.3e-12 75.5 212 31.6
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 7.3e-12 75.5 215 34.9
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 9.5e-12 75.1 209 32.1
CAN.G1307.1 Capsicum annuum HOM05D001472 ORTHO05D004439 1.2e-11 74.7 61 62.3
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 2.1e-11 73.9 209 31.6
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.1e-11 73.9 212 31.6
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.1e-11 73.9 212 31.6
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 8.0e-11 72.0 207 29.5
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 4.0e-10 69.7 214 31.3
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 4.0e-10 69.7 208 30.8
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.2e-10 69.3 213 31.0
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 5.2e-10 69.3 206 33.5
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 6.8e-10 68.9 209 28.7
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.8e-10 68.9 214 30.8
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 2.0e-09 67.4 209 29.7
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 3.4e-09 66.6 193 28.0
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 9.8e-09 65.1 205 30.7
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 2.2e-08 63.9 207 28.5
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 2.9e-08 63.5 209 28.7
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 2.9e-08 63.5 49 63.3
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 2.9e-08 63.5 206 27.7
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.7e-08 63.2 208 27.4
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 4.9e-08 62.8 192 28.1
TAR624G0546 Trochodendron aralioides HOM05D001816 ORTHO05D002001 4.9e-08 62.8 39 69.2
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 8.3e-08 62.0 32 78.1
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.3e-08 62.0 209 28.7
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 8.3e-08 62.0 208 27.4
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 1.1e-07 61.6 228 28.9
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 1.4e-07 61.2 209 27.8
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 1.8e-07 60.8 202 31.2
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 3.2e-07 60.1 31 77.4
Actinidia27039 Actinidia chinensis HOM05D001816 ORTHO05D002001 3.2e-07 60.1 31 77.4
Nitab4.5_0000021g0810 Nicotiana tabacum HOM05D001816 ORTHO05D002001 3.2e-07 60.1 31 80.6
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 4.1e-07 59.7 202 33.2
CSS0038936 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 7.0e-07 58.9 31 74.2
Nitab4.5_0009278g0020 Nicotiana tabacum HOM05D001816 ORTHO05D002001 7.0e-07 58.9 31 77.4
Solyc03g097290.4 Solanum lycopersicum HOM05D001816 ORTHO05D002001 7.0e-07 58.9 31 80.6
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 7.0e-07 58.9 31 80.6
Potri.005G094300 Populus trichocarpa HOM05D001816 ORTHO05D002001 9.2e-07 58.5 31 74.2
BcaB07g33474 Brassica carinata HOM05D001816 ORTHO05D002001 1.2e-06 58.2 31 74.2
A06p03300 Brassica napus HOM05D001816 ORTHO05D002001 1.2e-06 58.2 31 74.2
BraA06t23540Z Brassica rapa HOM05D001816 ORTHO05D002001 1.2e-06 58.2 31 74.2
Peaxi162Scf00516g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 1.2e-06 58.2 31 77.4
Sabra05G0078100 Salix brachista HOM05D001816 ORTHO05D002001 1.2e-06 58.2 31 74.2
CAN.G578.12 Capsicum annuum HOM05D001816 ORTHO05D004439 1.6e-06 57.8 46 65.2
FvH4_4g36780 Fragaria vesca HOM05D001816 ORTHO05D002001 1.6e-06 57.8 40 60.0
FAN07G1183 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.6e-06 57.8 40 60.0
FAN12G0939 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.6e-06 57.8 40 60.0
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.6e-06 57.8 206 27.7
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 2.0e-06 57.4 202 27.2
PSO111G0090 Papaver somniferum HOM05D001816 ORTHO05D002001 2.0e-06 57.4 31 74.2
PSO782G0984 Papaver somniferum HOM05D001816 ORTHO05D002001 2.0e-06 57.4 31 74.2
TAR629G2582 Trochodendron aralioides HOM05D001816 ORTHO05D002001 2.0e-06 57.4 31 74.2
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 2.7e-06 57.0 40 57.5
CDE05G2317 Ceratophyllum demersum HOM05D001816 ORTHO05D002001 2.7e-06 57.0 31 71.0
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 3.5e-06 56.6 31 71.0
BcaC01g01218 Brassica carinata HOM05D001816 ORTHO05D002001 3.5e-06 56.6 31 71.0
BcaC08g43202 Brassica carinata HOM05D001816 ORTHO05D002001 3.5e-06 56.6 31 71.0
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 3.5e-06 56.6 31 71.0
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 3.5e-06 56.6 31 71.0
C06p05260 Brassica napus HOM05D001816 ORTHO05D002001 3.5e-06 56.6 31 71.0
BolC3t21267H Brassica oleracea HOM05D001816 ORTHO05D002001 3.5e-06 56.6 31 71.0
BolC6t35631H Brassica oleracea HOM05D001816 ORTHO05D002001 3.5e-06 56.6 31 71.0
BolC6t35636H Brassica oleracea HOM05D001816 ORTHO05D002001 3.5e-06 56.6 31 71.0
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 3.5e-06 56.6 31 71.0
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 3.5e-06 56.6 31 71.0
CAN.G732.34 Capsicum annuum HOM05D001816 ORTHO05D002001 3.5e-06 56.6 31 80.6
CAN.G899.11 Capsicum annuum HOM05D001816 ORTHO05D002001 3.5e-06 56.6 31 80.6
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 3.5e-06 56.6 214 29.0
MBI15_g27187_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 3.5e-06 56.6 39 59.0
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 3.5e-06 56.6 98 38.8
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 3.5e-06 56.6 31 71.0
TWI77G0632 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 3.5e-06 56.6 40 57.5
Aa31LG10G3980 Aethionema arabicum HOM05D001816 ORTHO05D002001 4.6e-06 56.2 31 71.0
EL10Ac7g16954 Beta vulgaris HOM05D001816 ORTHO05D002001 4.6e-06 56.2 31 71.0
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 4.6e-06 56.2 54 50.0
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 4.6e-06 56.2 211 28.9
Lj3g0010854 Lotus japonicus HOM05D001816 ORTHO05D002001 4.6e-06 56.2 31 71.0
Lj3g0027168 Lotus japonicus HOM05D001816 ORTHO05D002001 4.6e-06 56.2 31 71.0
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 4.6e-06 56.2 40 57.5
Manes.11G108600 Manihot esculenta HOM05D001816 ORTHO05D002001 4.6e-06 56.2 31 71.0
Aqoxy7G03361 Aquilegia oxysepala HOM05D001816 ORTHO05D002001 5.9e-06 55.8 31 71.0
arahy.Tifrunner.gnm1.ann1.8P6R80 Arachis hypogaea HOM05D001816 ORTHO05D002001 5.9e-06 55.8 31 67.7
PSO063G5047 Papaver somniferum HOM05D001816 ORTHO05D002001 5.9e-06 55.8 31 71.0
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 5.9e-06 55.8 40 55.0
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 5.9e-06 55.8 31 67.7
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 7.8e-06 55.5 31 71.0
COL.COLO4_03690 Corchorus olitorius HOM05D001816 ORTHO05D002001 7.8e-06 55.5 33 63.6
Dinv29121 Davidia involucrata HOM05D001816 ORTHO05D002001 7.8e-06 55.5 31 71.0
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 7.8e-06 55.5 31 77.4
SGA_v2.0_scaffold59G20731 Striga asiatica HOM05D001816 ORTHO05D002001 7.8e-06 55.5 31 74.2


User provided reference genes

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