Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1355.7 Capsicum annuum HOM05D000921 ORTHO05D015037 2.6e-101 372.1 189 100.0
CAN.G1072.6 Capsicum annuum HOM05D000921 ORTHO05D004153 3.3e-80 302.0 166 91.6
Nitab4.5_0000459g0090 Nicotiana tabacum HOM05D000921 ORTHO05D004153 8.9e-78 293.9 166 89.2
Nitab4.5_0003424g0020 Nicotiana tabacum HOM05D000921 ORTHO05D004153 7.5e-77 290.8 166 88.0
Sopen09g027450 Solanum pennellii HOM05D000921 ORTHO05D004153 1.3e-76 290.0 166 86.7
Solyc09g065700.3 Solanum lycopersicum HOM05D000921 ORTHO05D004153 6.3e-76 287.7 166 86.1
Peaxi162Scf00259g00414 Petunia axillaris HOM05D000921 ORTHO05D004153 2.0e-74 282.7 166 84.9
MD03G1257800 Malus domestica HOM05D000921 ORTHO05D004153 1.4e-62 243.4 169 69.8
Cfa006203 Carpinus fangiana HOM05D000921 ORTHO05D004153 2.6e-61 239.2 160 70.6
Haze_04641 Corylus avellana HOM05D000921 ORTHO05D004153 5.8e-61 238.0 160 70.6
QL12p042334 Quercus lobata HOM05D000921 ORTHO05D004153 2.2e-60 236.1 162 69.8
Prupe.8G234500 Prunus persica HOM05D000921 ORTHO05D004153 4.9e-60 235.0 166 68.1
MD11G1278500 Malus domestica HOM05D000921 ORTHO05D004153 2.4e-59 232.6 166 66.9
RcHm_v2.0_Chr6g0289881 Rosa chinensis HOM05D000921 ORTHO05D004153 3.2e-59 232.3 168 66.7
Hma1.2p1_0760F.1_g214090 Hydrangea macrophylla HOM05D000921 ORTHO05D004153 1.2e-58 230.3 171 66.7
Potri.002G047700 Populus trichocarpa HOM05D000921 ORTHO05D004153 1.2e-58 230.3 162 67.9
FAN20G3205 Fragaria x ananassa HOM05D000921 ORTHO05D004153 2.7e-58 229.2 168 66.1
Sabra02G0038900 Salix brachista HOM05D000921 ORTHO05D004153 6.0e-58 228.0 159 68.6
FvH4_2g22920 Fragaria vesca HOM05D000921 ORTHO05D004153 7.8e-58 227.6 159 69.2
FAN24G0847 Fragaria x ananassa HOM05D000921 ORTHO05D004153 7.8e-58 227.6 159 69.2
Medtr1g071260 Medicago truncatula HOM05D000921 ORTHO05D004153 7.8e-58 227.6 167 67.1
Dinv32883 Davidia involucrata HOM05D000921 ORTHO05D004153 1.0e-57 227.3 156 70.5
FAN27G1722 Fragaria x ananassa HOM05D000921 ORTHO05D004153 1.0e-57 227.3 168 65.5
CANSAT25G1208 Cannabis sativa HOM05D000921 ORTHO05D004153 1.3e-57 226.9 165 64.8
Phvul.007G175300 Phaseolus vulgaris HOM05D000921 ORTHO05D004153 1.3e-57 226.9 167 65.9
FAN15G1223 Fragaria x ananassa HOM05D000921 ORTHO05D004153 1.7e-57 226.5 168 64.9
Migut.D00355 Erythranthe guttata HOM05D000921 ORTHO05D004153 3.9e-57 225.3 165 65.5
CiPaw.07G086700 Carya illinoinensis HOM05D000921 ORTHO05D004153 5.1e-57 224.9 159 67.9
DCAR_002700 Daucus carota HOM05D000921 ORTHO05D004153 1.1e-56 223.8 163 69.3
Manes.01G203800 Manihot esculenta HOM05D000921 ORTHO05D004153 1.1e-56 223.8 162 66.7
Cc01_g18990 Coffea canephora HOM05D000921 ORTHO05D004153 1.5e-56 223.4 160 70.0
Glyma.10G030000 Glycine max HOM05D000921 ORTHO05D004153 1.5e-56 223.4 167 67.1
Dinv22500 Davidia involucrata HOM05D000921 ORTHO05D004153 1.9e-56 223.0 163 68.1
Lalb_Chr06g0162771 Lupinus albus HOM05D000921 ORTHO05D004153 1.9e-56 223.0 167 66.5
TPR.G34892 Trifolium pratense HOM05D000921 ORTHO05D004153 1.9e-56 223.0 169 65.7
Atru.chr5.1523 Acer truncatum HOM05D000921 ORTHO05D004153 2.5e-56 222.6 160 66.2
Actinidia09105 Actinidia chinensis HOM05D000921 ORTHO05D004153 3.3e-56 222.2 162 66.0
Thecc.01G271200 Theobroma cacao HOM05D000921 ORTHO05D004153 3.3e-56 222.2 159 68.6
COL.COLO4_09186 Corchorus olitorius HOM05D000921 ORTHO05D004153 4.3e-56 221.9 167 65.3
Glyma.02G144200 Glycine max HOM05D000921 ORTHO05D004153 4.3e-56 221.9 167 67.1
Gohir.A11G125600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 4.3e-56 221.9 161 67.7
Lj1C56G6 Lonicera japonica HOM05D000921 ORTHO05D004153 4.3e-56 221.9 163 67.5
Oeu038250.1 Olea europaea HOM05D000921 ORTHO05D015037 4.3e-56 221.9 166 65.7
Actinidia19962 Actinidia chinensis HOM05D000921 ORTHO05D004153 7.3e-56 221.1 160 65.6
Ca_09726_v3 Cicer arietinum L. HOM05D000921 ORTHO05D004153 9.5e-56 220.7 162 67.3
Cpa.g.sc52.120 Carica papaya HOM05D000921 ORTHO05D004153 1.6e-55 219.9 158 67.7
Psat6g058840 Pisum sativum HOM05D000921 ORTHO05D004153 1.6e-55 219.9 167 67.7
arahy.Tifrunner.gnm1.ann1.0T0464 Arachis hypogaea HOM05D000921 ORTHO05D004153 2.1e-55 219.5 168 64.9
arahy.Tifrunner.gnm1.ann1.BY50EL Arachis hypogaea HOM05D000921 ORTHO05D004153 2.1e-55 219.5 168 64.9
CSS0032745 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 2.1e-55 219.5 160 67.5
Nn6g33594 Nelumbo nucifera HOM05D000921 ORTHO05D004153 2.1e-55 219.5 162 68.5
TWI12G1077 Tripterygium wilfordii HOM05D000921 ORTHO05D004153 2.1e-55 219.5 156 70.5
Duzib133G0456 Durio zibethinus HOM05D000921 ORTHO05D004153 2.8e-55 219.2 160 67.5
Sc17g0001150 Simmondsia chinensis HOM05D000921 ORTHO05D015037 2.8e-55 219.2 160 68.8
TWI18G0154 Tripterygium wilfordii HOM05D000921 ORTHO05D004153 4.7e-55 218.4 159 69.2
CSS0010203 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 6.2e-55 218.0 157 67.5
CSS0042369 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 6.2e-55 218.0 157 67.5
MSTRG.21525 Avicennia marina HOM05D000921 ORTHO05D004153 8.1e-55 217.6 167 62.9
Lj5g0027434 Lotus japonicus HOM05D000921 ORTHO05D004153 8.1e-55 217.6 175 62.3
Gorai.007G140000 Gossypium raimondii HOM05D000921 ORTHO05D004153 1.4e-54 216.9 161 66.5
Duzib138G1896 Durio zibethinus HOM05D000921 ORTHO05D004153 1.8e-54 216.5 158 67.7
Gohir.D11G131000 Gossypium hirsutum HOM05D000921 ORTHO05D004153 4.0e-54 215.3 158 67.1
Ah.11g050210 Amaranthus hybridus HOM05D000921 ORTHO05D004153 5.2e-54 214.9 160 66.2
vmacro02613 Vaccinium macrocarpon HOM05D000921 ORTHO05D004153 5.2e-54 214.9 160 64.4
AL1G12520 Arabidopsis lyrata HOM05D000921 ORTHO05D004153 6.8e-54 214.5 168 61.9
EL10Ac5g10491 Beta vulgaris HOM05D000921 ORTHO05D004153 6.8e-54 214.5 161 65.8
Lj2C1164G7 Lonicera japonica HOM05D000921 ORTHO05D004153 8.9e-54 214.2 162 67.3
Rhsim13G0028700 Rhododendron simsii HOM05D000921 ORTHO05D004153 8.9e-54 214.2 157 65.6
TAR633G0413 Trochodendron aralioides HOM05D000921 ORTHO05D004153 8.9e-54 214.2 165 64.2
Ciclev10018426m.g Citrus clementina HOM05D000921 ORTHO05D004153 1.2e-53 213.8 157 66.9
BraA09t42173Z Brassica rapa HOM05D000921 ORTHO05D004153 2.6e-53 212.6 156 66.7
AUR62032282 Chenopodium quinoa HOM05D000921 ORTHO05D004153 3.4e-53 212.2 160 65.0
A09p68370 Brassica napus HOM05D000921 ORTHO05D004153 5.8e-53 211.5 156 66.7
Carub.0001s0220 Capsella rubella HOM05D000921 ORTHO05D004153 5.8e-53 211.5 160 63.8
Aqoxy5G00390 Aquilegia oxysepala HOM05D000921 ORTHO05D004153 7.5e-53 211.1 164 64.6
CARHR002410 Cardamine hirsuta HOM05D000921 ORTHO05D004153 7.5e-53 211.1 156 65.4
SGA_v2.0_scaffold1G00535 Striga asiatica HOM05D000921 ORTHO05D004153 7.5e-53 211.1 161 64.0
Potri.005G215400 Populus trichocarpa HOM05D000921 ORTHO05D004153 9.9e-53 210.7 156 64.1
Sp1g02060 Schrenkiella parvula HOM05D000921 ORTHO05D004153 9.9e-53 210.7 156 65.4
AT1G03060 Arabidopsis thaliana HOM05D000921 ORTHO05D004153 1.3e-52 210.3 160 63.1
Sabra05G0164600 Salix brachista HOM05D000921 ORTHO05D004153 1.7e-52 209.9 156 64.1
C08p52940 Brassica napus HOM05D000921 ORTHO05D004153 2.2e-52 209.5 156 65.4
BolC8t52810H Brassica oleracea HOM05D000921 ORTHO05D004153 2.2e-52 209.5 156 65.4
AUR62011970 Chenopodium quinoa HOM05D000921 ORTHO05D004153 2.2e-52 209.5 160 65.0
Gorai.004G056400 Gossypium raimondii HOM05D000921 ORTHO05D004153 2.9e-52 209.1 157 65.6
Aa31LG1G9470 Aethionema arabicum HOM05D000921 ORTHO05D004153 3.7e-52 208.8 156 64.7
BcaC07g42269 Brassica carinata HOM05D000921 ORTHO05D004153 3.7e-52 208.8 156 65.4
A10p01690 Brassica napus HOM05D000921 ORTHO05D004153 3.7e-52 208.8 158 63.9
C05p01680 Brassica napus HOM05D000921 ORTHO05D004153 3.7e-52 208.8 158 63.9
BolC5t28947H Brassica oleracea HOM05D000921 ORTHO05D004153 3.7e-52 208.8 158 63.9
BraA10t42445Z Brassica rapa HOM05D000921 ORTHO05D004153 3.7e-52 208.8 158 63.9
Thhalv10006519m.g Eutrema salsugineum HOM05D000921 ORTHO05D004153 1.1e-51 207.2 156 64.7
Lsat_1_v5_gn_5_185441 Lactuca sativa HOM05D000921 ORTHO05D004153 1.4e-51 206.8 167 63.5
BcaB03g15744 Brassica carinata HOM05D000921 ORTHO05D004153 1.9e-51 206.5 156 64.1
Gohir.D08G205600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 1.9e-51 206.5 159 65.4
Gorai.004G217600 Gossypium raimondii HOM05D000921 ORTHO05D004153 1.9e-51 206.5 159 65.4
PGR044G0864 Punica granatum HOM05D000921 ORTHO05D004153 7.1e-51 204.5 167 59.9
arahy.Tifrunner.gnm1.ann1.IAH9UB Arachis hypogaea HOM05D000921 ORTHO05D004153 1.6e-50 203.4 168 61.9
Hund02865 Selenicereus undatus HOM05D000921 ORTHO05D004153 2.1e-50 203.0 159 64.8
arahy.Tifrunner.gnm1.ann1.EGZY1N Arachis hypogaea HOM05D000921 ORTHO05D004153 3.5e-50 202.2 168 61.3
THA.LOC104825985 Tarenaya hassleriana HOM05D000921 ORTHO05D004153 7.8e-50 201.1 157 65.0
AL6G50380 Arabidopsis lyrata HOM05D000921 ORTHO05D004153 1.0e-49 200.7 156 62.8
CsaV3_7G027700 Cucumis sativus L. HOM05D000921 ORTHO05D004153 1.0e-49 200.7 167 60.5
Eucgr.K03323 Eucalyptus grandis HOM05D000921 ORTHO05D004153 1.0e-49 200.7 159 63.5
PSO210G1924 Papaver somniferum HOM05D000921 ORTHO05D004153 1.0e-49 200.7 152 65.8
MELO3C015783.2 Cucumis melo HOM05D000921 ORTHO05D004153 1.3e-49 200.3 169 59.2
Carub.0006s3446 Capsella rubella HOM05D000921 ORTHO05D004153 1.7e-49 199.9 156 62.2
HanXRQChr01g0005671 Helianthus annuus HOM05D000921 ORTHO05D004153 3.0e-49 199.1 168 60.1
HanXRQChr06g0177821 Helianthus annuus HOM05D000921 ORTHO05D004153 3.0e-49 199.1 168 58.9
CARHR250960 Cardamine hirsuta HOM05D000921 ORTHO05D004153 5.1e-49 198.4 156 62.2
Hund09551 Selenicereus undatus HOM05D000921 ORTHO05D004153 5.1e-49 198.4 163 60.1
AT4G02660 Arabidopsis thaliana HOM05D000921 ORTHO05D004153 6.6e-49 198.0 156 61.5
Nn1g00513 Nelumbo nucifera HOM05D000921 ORTHO05D004153 6.6e-49 198.0 154 64.3
ECA248G3113 Erigeron canadensis HOM05D000921 ORTHO05D004153 8.6e-49 197.6 168 58.3
ClCG09G007420 Citrullus lanatus HOM05D000921 ORTHO05D004153 2.5e-48 196.1 162 61.7
Gohir.D03G068300 Gossypium hirsutum HOM05D000921 ORTHO05D015037 3.3e-48 195.7 142 68.3
Sed0015319 Sechium edule HOM05D000921 ORTHO05D004153 3.3e-48 195.7 170 58.2
Sc05g0001320 Simmondsia chinensis HOM05D000921 ORTHO05D004153 7.3e-48 194.5 160 63.1
HanXRQChr04g0113931 Helianthus annuus HOM05D000921 ORTHO05D004153 1.6e-47 193.4 160 58.8
Zm00001eb056940 Zea mays HOM05D000921 ORTHO05D004153 2.8e-47 192.6 155 60.6
Lalb_Chr01g0019981 Lupinus albus HOM05D000921 ORTHO05D004153 3.6e-47 192.2 163 59.5
Gorai.003G092300 Gossypium raimondii HOM05D000921 ORTHO05D015037 6.2e-47 191.4 142 66.9
Gorai.004G093100 Gossypium raimondii HOM05D000921 ORTHO05D015037 6.2e-47 191.4 142 66.9
SalBow4G3326 Salvia bowleyana HOM05D000921 ORTHO05D004153 1.8e-46 189.9 161 58.4
ECA236G3737 Erigeron canadensis HOM05D000921 ORTHO05D004153 3.1e-46 189.1 160 58.8
BcaB01g02482 Brassica carinata HOM05D000921 ORTHO05D004153 6.8e-46 188.0 160 58.1
Sp6g02580 Schrenkiella parvula HOM05D000921 ORTHO05D004153 8.9e-46 187.6 156 60.9
ATR0665G073 Amborella trichopoda HOM05D000921 ORTHO05D004153 1.2e-45 187.2 157 61.8
Os03g0744675 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D004153 1.2e-45 187.2 156 59.0
Lsat_1_v5_gn_8_93941 Lactuca sativa HOM05D000921 ORTHO05D004153 2.2e-44 183.0 155 58.7
BcaC01g06740 Brassica carinata HOM05D000921 ORTHO05D004153 1.1e-43 180.6 160 55.6
CDE04G0357 Ceratophyllum demersum HOM05D000921 ORTHO05D004153 9.2e-43 177.6 152 57.9
SEGI_18450 Sequoiadendron giganteum HOM05D000921 ORTHO05D004153 3.5e-42 175.6 153 58.8
Gohir.D07G116900 Gossypium hirsutum HOM05D000921 ORTHO05D015037 6.6e-41 171.4 127 67.7
SHI10018 Sapria himalayana HOM05D000921 ORTHO05D004153 1.9e-40 169.9 153 57.5
Gohir.D02G156000 Gossypium hirsutum HOM05D000921 ORTHO05D015037 5.6e-40 168.3 127 64.6
CDE10G0697 Ceratophyllum demersum HOM05D000921 ORTHO05D004153 2.0e-37 159.8 155 51.0
PSO461G0055 Papaver somniferum HOM05D000921 ORTHO05D004153 7.1e-35 151.4 153 50.3
GSVIVG01003123001 Vitis vinifera HOM05D000921 ORTHO05D004153 1.7e-33 146.7 135 58.5
Psat7g116160 Pisum sativum HOM05D002786 ORTHO05D015037 4.6e-26 122.1 151 48.3
Psat0s5953g0080 Pisum sativum HOM05D001390 ORTHO05D015037 5.6e-24 115.2 90 66.7
Pp3c6_26100 Physcomitrium patens HOM05D000921 ORTHO05D004153 1.9e-19 100.1 162 36.4
Mapoly0082s0083 Marchantia polymorpha HOM05D000921 ORTHO05D004153 4.2e-19 99.0 156 38.5
AagrBONN_evm.TU.Sc2ySwM_117.1900 Anthoceros agrestis HOM05D000921 ORTHO05D004153 1.2e-18 97.4 188 34.6
Pp3c5_2890 Physcomitrium patens HOM05D000921 ORTHO05D004153 2.1e-18 96.7 162 38.9
Pp3c5_2897 Physcomitrium patens HOM05D000921 ORTHO05D004153 2.1e-18 96.7 162 38.9
Lsat_1_v5_gn_4_20061 Lactuca sativa HOM05D000548 ORTHO05D015037 6.0e-18 95.1 84 57.1
HPP92_021305 Vanilla planifolia HOM05D000921 ORTHO05D004153 1.5e-13 80.5 57 66.7
Pp3c6_5700 Physcomitrium patens HOM05D000921 ORTHO05D004153 8.4e-12 74.7 178 29.2
Pp3c6_5706 Physcomitrium patens HOM05D000921 ORTHO05D004153 8.4e-12 74.7 178 29.2
unitig_61.g26265 Utricularia gibba HOM05D000921 ORTHO05D004153 5.5e-11 72.0 156 31.4
Pp3c16_11700 Physcomitrium patens HOM05D000921 ORTHO05D004153 6.1e-10 68.6 195 26.2
Pp3c16_11705 Physcomitrium patens HOM05D000921 ORTHO05D004153 6.1e-10 68.6 195 26.2


User provided reference genes

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