Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 1.2e-114 416.8 243 100.0
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 1.7e-97 359.8 225 86.7
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 6.4e-97 357.8 225 86.2
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 8.4e-89 330.9 220 82.7
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.9e-88 329.7 221 86.9
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 6.4e-81 304.7 221 81.9
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 1.9e-72 276.6 230 70.4
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 3.0e-70 269.2 220 69.5
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 4.3e-69 265.4 219 68.0
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 1.3e-68 263.8 221 68.3
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 6.3e-68 261.5 227 70.0
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 8.5e-65 251.1 225 64.9
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 1.4e-64 250.4 257 59.1
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 3.6e-63 245.7 234 65.0
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 6.1e-63 245.0 234 62.8
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 6.1e-63 245.0 234 64.5
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 7.9e-63 244.6 234 65.0
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 1.0e-62 244.2 224 64.7
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 2.3e-62 243.0 232 60.3
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 3.9e-62 242.3 237 63.7
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 3.9e-62 242.3 233 63.5
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 8.8e-62 241.1 225 63.1
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 1.1e-61 240.7 241 60.2
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 3.3e-61 239.2 221 65.6
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 7.4e-61 238.0 234 61.5
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 2.2e-60 236.5 219 64.8
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 6.3e-60 235.0 251 56.6
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 8.2e-60 234.6 236 60.2
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 1.8e-59 233.4 235 60.9
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 5.3e-59 231.9 183 72.1
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.2e-58 230.7 172 73.8
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 5.9e-58 228.4 229 63.3
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 1.0e-57 227.6 184 72.3
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 3.8e-57 225.7 234 60.7
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 6.5e-57 224.9 223 62.3
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 1.9e-56 223.4 217 60.4
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 7.2e-56 221.5 233 66.1
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 1.6e-55 220.3 229 56.8
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.6e-55 220.3 228 61.8
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 1.6e-55 220.3 242 58.3
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 4.7e-55 218.8 229 59.0
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 7.9e-55 218.0 258 55.4
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.4e-54 217.2 236 58.5
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.8e-54 216.9 228 59.2
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.3e-54 216.5 234 57.7
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 2.3e-54 216.5 222 58.6
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 3.0e-54 216.1 234 58.1
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 8.8e-54 214.5 221 61.5
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 1.5e-53 213.8 234 57.7
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 4.4e-53 212.2 331 45.0
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 4.4e-53 212.2 227 59.9
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 1.3e-52 210.7 230 58.7
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 1.7e-52 210.3 221 58.4
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 2.2e-52 209.9 234 57.3
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 3.7e-52 209.1 235 57.0
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 3.7e-52 209.1 218 58.3
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 4.8e-52 208.8 226 57.5
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.1e-51 207.6 226 57.1
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.4e-51 207.2 230 57.4
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 1.4e-51 207.2 215 57.2
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 2.4e-51 206.5 212 58.5
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 3.1e-51 206.1 226 57.5
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 3.1e-51 206.1 243 55.6
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 1.5e-50 203.8 226 57.5
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 2.6e-50 203.0 227 56.8
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 5.9e-50 201.8 211 60.2
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 1.3e-49 200.7 279 50.2
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 2.2e-49 199.9 224 55.8
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 2.9e-49 199.5 213 57.3
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 2.9e-49 199.5 222 55.9
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 1.5e-48 197.2 227 56.4
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 4.2e-48 195.7 234 60.3
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 5.5e-48 195.3 238 55.9
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 7.2e-48 194.9 232 52.2
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 1.2e-47 194.1 225 54.7
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 2.7e-47 193.0 234 54.7
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 2.7e-47 193.0 218 57.3
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 6.1e-47 191.8 233 54.5
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 8.0e-47 191.4 234 55.1
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 1.0e-46 191.0 208 55.8
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 1.4e-46 190.7 211 56.4
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 1.8e-46 190.3 232 51.7
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 2.3e-46 189.9 219 54.8
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 2.3e-46 189.9 228 52.2
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 3.0e-46 189.5 223 54.7
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 3.0e-46 189.5 231 52.8
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 6.7e-46 188.3 240 53.3
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 2.6e-45 186.4 233 51.1
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 7.4e-45 184.9 227 53.7
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 9.7e-45 184.5 220 55.9
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 1.3e-44 184.1 230 53.9
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 1.3e-44 184.1 211 54.0
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 1.7e-44 183.7 238 51.7
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 1.7e-44 183.7 232 52.2
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 6.3e-44 181.8 220 55.5
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 1.8e-43 180.3 230 52.6
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 2.4e-43 179.9 220 55.0
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 2.4e-43 179.9 220 55.0
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 5.3e-43 178.7 186 59.7
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 3.5e-42 176.0 216 52.8
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 4.5e-42 175.6 226 52.2
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 7.7e-42 174.9 232 52.2
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 1.5e-40 170.6 226 50.4
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 9.4e-40 167.9 223 50.7
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.6e-39 167.2 217 49.8
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.6e-39 167.2 217 49.8
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 3.6e-39 166.0 215 54.4
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 1.8e-38 163.7 267 45.7
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 1.8e-38 163.7 267 45.7
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 4.0e-38 162.5 200 53.0
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 6.8e-38 161.8 221 54.3
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 6.8e-38 161.8 211 50.2
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 4.4e-37 159.1 216 49.5
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 3.7e-36 156.0 229 47.2
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 3.7e-36 156.0 229 47.2
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 3.7e-36 156.0 229 47.2
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 6.3e-36 155.2 218 47.2
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 1.4e-35 154.1 231 47.2
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 1.4e-35 154.1 231 47.2
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 1.3e-33 147.5 227 52.9
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 1.9e-32 143.7 215 48.4
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 2.7e-31 139.8 229 43.2
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 3.0e-30 136.3 156 52.6
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 6.8e-30 135.2 217 43.8
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 8.8e-30 134.8 309 38.2
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 4.4e-29 132.5 98 74.5
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 8.3e-28 128.3 160 51.2
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 1.3e-25 120.9 144 54.9
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 5.0e-25 119.0 164 50.6
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 4.7e-23 112.5 210 41.4
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 4.0e-22 109.4 141 51.8
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 8.9e-22 108.2 157 50.3
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 5.7e-21 105.5 246 37.8
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 6.3e-20 102.1 217 37.3
CAN.G1352.26 Capsicum annuum HOM05D002196 ORTHO05D011452 3.2e-19 99.8 59 89.8
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 7.0e-19 98.6 124 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 4.7e-15 85.9 107 52.3
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 1.3e-12 77.8 104 51.9
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 2.4e-11 73.6 80 60.0
Lj5A253T37 Lonicera japonica HOM05D012292 ORTHO05D012234 1.2e-10 71.2 211 36.5
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 1.3e-09 67.8 55 67.3
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 1.3e-09 67.8 55 67.3
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 2.3e-09 67.0 39 82.1
Lj5A252G43 Lonicera japonica HOM05D012292 ORTHO05D012234 3.9e-09 66.2 92 47.8
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 1.4e-06 57.8 92 43.5
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 2.3e-06 57.0 147 35.4


User provided reference genes

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