Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G134.207 Capsicum annuum HOM05D001472 ORTHO05D115246 6.6e-34 146.7 71 100.0
Sopen06g029710 Solanum pennellii HOM05D001472 ORTHO05D002655 1.7e-18 95.5 104 51.9
PGSC0003DMG400026909 Solanum tuberosum HOM05D001472 ORTHO05D002655 1.7e-18 95.5 104 51.9
Solyc06g073330.4 Solanum lycopersicum HOM05D001472 ORTHO05D002655 6.6e-18 93.6 104 51.0
CAN.G65.176 Capsicum annuum HOM05D001472 ORTHO05D002655 8.6e-18 93.2 104 51.0
Nitab4.5_0001111g0020 Nicotiana tabacum HOM05D001472 ORTHO05D002655 8.6e-18 93.2 104 51.0
Peaxi162Scf00375g00035 Petunia axillaris HOM05D001472 ORTHO05D002655 1.6e-16 89.0 104 49.0
AUR62002331 Chenopodium quinoa HOM05D001472 ORTHO05D002655 8.1e-16 86.7 65 66.2
MBI06_g41415_MAGBIO Magnolia biondii HOM05D001472 ORTHO05D002655 3.4e-14 81.3 67 59.7
SalBow7G0701 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.7e-13 79.0 107 43.0
Migut.E00363 Erythranthe guttata HOM05D001472 ORTHO05D002655 1.4e-12 75.9 105 43.8
DCAR_017981 Daucus carota HOM05D001472 ORTHO05D002655 4.1e-12 74.3 107 42.1
HanXRQChr09g0244411 Helianthus annuus HOM05D001472 ORTHO05D002655 4.1e-12 74.3 107 42.1
Thecc.04G166900 Theobroma cacao HOM05D001472 ORTHO05D002655 5.4e-12 73.9 104 40.4
Nitab4.5_0000158g0150 Nicotiana tabacum HOM05D001472 ORTHO05D002655 7.1e-12 73.6 104 40.4
CANSAT11G0930 Cannabis sativa HOM05D001472 ORTHO05D002655 9.2e-12 73.2 107 41.1
Eucgr.C00141 Eucalyptus grandis HOM05D001472 ORTHO05D002655 1.2e-11 72.8 107 41.1
Lsat_1_v5_gn_7_53840 Lactuca sativa HOM05D001472 ORTHO05D002655 1.6e-11 72.4 107 41.1
Lj3C272G7 Lonicera japonica HOM05D001472 ORTHO05D002655 1.6e-11 72.4 106 42.5
Atru.chr7.849 Acer truncatum HOM05D001472 ORTHO05D002655 2.1e-11 72.0 107 41.1
Ciclev10007700m.g Citrus clementina HOM05D001472 ORTHO05D002655 2.1e-11 72.0 105 41.9
Duzib151G0853 Durio zibethinus HOM05D001472 ORTHO05D002655 2.1e-11 72.0 104 39.4
HanXRQChr07g0202161 Helianthus annuus HOM05D001472 ORTHO05D002655 2.1e-11 72.0 107 42.1
THA.LOC104803944 Tarenaya hassleriana HOM05D001472 ORTHO05D002655 2.1e-11 72.0 107 41.1
COL.COLO4_14564 Corchorus olitorius HOM05D001472 ORTHO05D002655 2.7e-11 71.6 104 39.4
Gohir.A10G142700 Gossypium hirsutum HOM05D001472 ORTHO05D002655 2.7e-11 71.6 104 38.5
Gohir.D10G124000 Gossypium hirsutum HOM05D001472 ORTHO05D002655 2.7e-11 71.6 104 38.5
Gorai.011G136900 Gossypium raimondii HOM05D001472 ORTHO05D002655 2.7e-11 71.6 104 38.5
SGA_v2.0_scaffold36G14548 Striga asiatica HOM05D001472 ORTHO05D002655 2.7e-11 71.6 105 41.9
SGA_v2.0_scaffold38G14974 Striga asiatica HOM05D001472 ORTHO05D002655 3.5e-11 71.2 105 41.9
THA.LOC104819974 Tarenaya hassleriana HOM05D001472 ORTHO05D002655 3.5e-11 71.2 107 42.1
TAR625G0316 Trochodendron aralioides HOM05D001472 ORTHO05D002655 3.5e-11 71.2 107 40.2
GSVIVG01019319001 Vitis vinifera HOM05D001472 ORTHO05D002655 3.5e-11 71.2 107 40.2
Nitab4.5_0003132g0020 Nicotiana tabacum HOM05D001472 ORTHO05D002655 6.0e-11 70.5 62 61.3
Nitab4.5_0004453g0030 Nicotiana tabacum HOM05D001472 ORTHO05D002655 6.0e-11 70.5 62 61.3
TAR626G0028 Trochodendron aralioides HOM05D001472 ORTHO05D002655 6.0e-11 70.5 107 40.2
COL.COLO4_07536 Corchorus olitorius HOM05D001472 ORTHO05D002655 7.8e-11 70.1 104 38.5
CSS0013295 Camellia sinensis var. sinensis HOM05D001472 ORTHO05D002655 1.0e-10 69.7 105 41.0
Migut.L01040 Erythranthe guttata HOM05D001472 ORTHO05D002655 1.0e-10 69.7 101 44.6
Gohir.A02G091000 Gossypium hirsutum HOM05D001472 ORTHO05D002655 1.0e-10 69.7 104 38.5
Gohir.D02G109500 Gossypium hirsutum HOM05D001472 ORTHO05D002655 1.0e-10 69.7 104 38.5
Gorai.005G123900 Gossypium raimondii HOM05D001472 ORTHO05D002655 1.0e-10 69.7 104 38.5
Lsat_1_v5_gn_6_9881 Lactuca sativa HOM05D001472 ORTHO05D002655 1.0e-10 69.7 104 40.4
Aa31sc52G240 Aethionema arabicum HOM05D001472 ORTHO05D002655 1.3e-10 69.3 105 39.0
Duzib212G0443 Durio zibethinus HOM05D001472 ORTHO05D002655 1.3e-10 69.3 104 38.5
Psat1g146840 Pisum sativum HOM05D001472 ORTHO05D002655 1.3e-10 69.3 106 40.6
GSVIVG01031124001 Vitis vinifera HOM05D001472 ORTHO05D002655 1.3e-10 69.3 107 39.3
Actinidia25822 Actinidia chinensis HOM05D001472 ORTHO05D002655 1.7e-10 68.9 105 40.0
Hma1.2p1_1086F.1_g255440 Hydrangea macrophylla HOM05D001472 ORTHO05D002655 1.7e-10 68.9 107 39.3
Lj3C269T1 Lonicera japonica HOM05D001472 ORTHO05D002655 1.7e-10 68.9 115 39.1
TWI73G0132 Tripterygium wilfordii HOM05D001472 ORTHO05D002655 1.7e-10 68.9 107 40.2
Cc04_g03360 Coffea canephora HOM05D001472 ORTHO05D002655 2.3e-10 68.6 105 40.0
Cc07_g21030 Coffea canephora HOM05D001472 ORTHO05D002655 2.3e-10 68.6 105 40.0
Glyma.10G069800 Glycine max HOM05D001472 ORTHO05D002655 3.0e-10 68.2 106 40.6
Lalb_Chr15g0084021 Lupinus albus HOM05D001472 ORTHO05D002655 3.0e-10 68.2 106 40.6
Rhsim03G0265300 Rhododendron simsii HOM05D001472 ORTHO05D002655 3.0e-10 68.2 105 39.0
CiPaw.07G194000 Carya illinoinensis HOM05D001472 ORTHO05D002655 3.9e-10 67.8 107 39.3
Glyma.13G152678 Glycine max HOM05D001472 ORTHO05D002655 3.9e-10 67.8 106 40.6
Cpa.g.sc95.40 Carica papaya HOM05D001472 ORTHO05D002655 5.1e-10 67.4 105 38.1
ECA240G4268 Erigeron canadensis HOM05D001472 ORTHO05D002655 5.1e-10 67.4 107 39.3
QL11p005259 Quercus lobata HOM05D001472 ORTHO05D002655 5.1e-10 67.4 109 39.4
BolC5t34284H Brassica oleracea HOM05D001472 ORTHO05D002655 6.6e-10 67.0 55 58.2
Lj6g0025404 Lotus japonicus HOM05D001472 ORTHO05D002655 6.6e-10 67.0 106 39.6
VMungo1309G2403 Vigna mungo HOM05D001472 ORTHO05D002655 6.6e-10 67.0 104 40.4
ClCG11G012010 Citrullus lanatus HOM05D001472 ORTHO05D002655 8.6e-10 66.6 107 38.3
Ah.13g072790 Amaranthus hybridus HOM05D001472 ORTHO05D002655 1.1e-09 66.2 107 38.3
Ca_08012_v3 Cicer arietinum L. HOM05D001472 ORTHO05D002655 1.1e-09 66.2 107 39.3
RcHm_v2.0_Chr4g0401131 Rosa chinensis HOM05D001472 ORTHO05D002655 1.1e-09 66.2 107 38.3
Hund12017 Selenicereus undatus HOM05D001472 ORTHO05D002655 1.1e-09 66.2 105 39.0
arahy.Tifrunner.gnm1.ann1.23M4YM Arachis hypogaea HOM05D001472 ORTHO05D002655 1.5e-09 65.9 106 38.7
arahy.Tifrunner.gnm1.ann1.J8SPSJ Arachis hypogaea HOM05D001472 ORTHO05D002655 1.5e-09 65.9 106 38.7
Manes.07G091500 Manihot esculenta HOM05D001472 ORTHO05D002655 1.5e-09 65.9 104 36.5
Sed0000139 Sechium edule HOM05D001472 ORTHO05D002655 1.5e-09 65.9 107 38.3
MSTRG.3730 Avicennia marina HOM05D001472 ORTHO05D002655 1.9e-09 65.5 105 39.0
MELO3C004005.2 Cucumis melo HOM05D001472 ORTHO05D002655 1.9e-09 65.5 107 38.3
CsaV3_2G008510 Cucumis sativus L. HOM05D001472 ORTHO05D002655 1.9e-09 65.5 107 38.3
Phvul.009G239100 Phaseolus vulgaris HOM05D001472 ORTHO05D002655 1.9e-09 65.5 106 39.6
Potri.018G090400 Populus trichocarpa HOM05D001472 ORTHO05D002655 1.9e-09 65.5 106 38.7
Potri.018G090600 Populus trichocarpa HOM05D001472 ORTHO05D002655 1.9e-09 65.5 106 38.7
Sabra06G0127700 Salix brachista HOM05D001472 ORTHO05D002655 1.9e-09 65.5 106 38.7
Sabra18G0077800 Salix brachista HOM05D001472 ORTHO05D002655 1.9e-09 65.5 106 38.7
MSTRG.13548 Avicennia marina HOM05D001472 ORTHO05D002655 2.5e-09 65.1 105 38.1
Glyma.17G028300 Glycine max HOM05D001472 ORTHO05D002655 2.5e-09 65.1 107 38.3
Lj4g0012621 Lotus japonicus HOM05D001472 ORTHO05D002655 2.5e-09 65.1 107 38.3
AUR62023857 Chenopodium quinoa HOM05D001472 ORTHO05D002655 3.3e-09 64.7 107 38.3
Lalb_Chr18g0052401 Lupinus albus HOM05D001472 ORTHO05D002655 3.3e-09 64.7 107 38.3
Medtr2g036600 Medicago truncatula HOM05D001472 ORTHO05D002655 3.3e-09 64.7 104 39.4
PSO541G1999 Papaver somniferum HOM05D001472 ORTHO05D002655 3.3e-09 64.7 107 37.4
PSO675G4629 Papaver somniferum HOM05D001472 ORTHO05D002655 3.3e-09 64.7 107 37.4
QL06p041145 Quercus lobata HOM05D001472 ORTHO05D002655 3.3e-09 64.7 109 39.4
CAN.G1307.1 Capsicum annuum HOM05D001472 ORTHO05D004439 5.6e-09 63.9 35 85.7
PGR044G0930 Punica granatum HOM05D001472 ORTHO05D002655 5.6e-09 63.9 107 35.5
VMungo1215G3442 Vigna mungo HOM05D001472 ORTHO05D002655 5.6e-09 63.9 107 37.4
EL10Ac3g05985 Beta vulgaris HOM05D001472 ORTHO05D002655 7.3e-09 63.5 107 38.3
EL10Ac3g05987 Beta vulgaris HOM05D001472 ORTHO05D002655 9.5e-09 63.2 107 36.4
BraA01t04165Z Brassica rapa HOM05D001472 ORTHO05D002655 9.5e-09 63.2 104 38.5
Dinv19558 Davidia involucrata HOM05D001472 ORTHO05D002655 9.5e-09 63.2 127 33.9
Potri.006G166000 Populus trichocarpa HOM05D001472 ORTHO05D002655 9.5e-09 63.2 106 37.7
QL06p041077 Quercus lobata HOM05D001472 ORTHO05D002655 9.5e-09 63.2 108 38.9
QL11p005215 Quercus lobata HOM05D001472 ORTHO05D002655 9.5e-09 63.2 109 37.6
BcaB04g21121 Brassica carinata HOM05D001472 ORTHO05D002655 1.6e-08 62.4 104 37.5
C03p45100 Brassica napus HOM05D001472 ORTHO05D002655 1.6e-08 62.4 104 39.4
BolC3t16772H Brassica oleracea HOM05D001472 ORTHO05D002655 1.6e-08 62.4 104 39.4
Carub.0003s1105 Capsella rubella HOM05D001472 ORTHO05D002655 1.6e-08 62.4 104 38.5
PGR044G0366 Punica granatum HOM05D001472 ORTHO05D002655 1.6e-08 62.4 107 35.5
Sp3g09940 Schrenkiella parvula HOM05D001472 ORTHO05D002655 1.6e-08 62.4 104 38.5
TWI53G0276 Tripterygium wilfordii HOM05D001472 ORTHO05D002655 1.6e-08 62.4 109 38.5
BcaB04g18656 Brassica carinata HOM05D001472 ORTHO05D002655 2.1e-08 62.0 104 38.5
Sed0016659 Sechium edule HOM05D001472 ORTHO05D002655 2.1e-08 62.0 106 35.8
AL3G23270 Arabidopsis lyrata HOM05D001472 ORTHO05D002655 2.8e-08 61.6 104 38.5
AT3G11710 Arabidopsis thaliana HOM05D001472 ORTHO05D002655 2.8e-08 61.6 104 38.5
BcaC09g48202 Brassica carinata HOM05D001472 ORTHO05D002655 2.8e-08 61.6 104 37.5
BolC1t05296H Brassica oleracea HOM05D001472 ORTHO05D002655 2.8e-08 61.6 104 37.5
CSS0036832 Camellia sinensis var. sinensis HOM05D001472 ORTHO05D002655 2.8e-08 61.6 105 37.1
Hund03172 Selenicereus undatus HOM05D001472 ORTHO05D002655 2.8e-08 61.6 107 35.5
MBI06_g35964_MAGBIO Magnolia biondii HOM05D001472 ORTHO05D002655 3.6e-08 61.2 109 35.8
MD16G1255000 Malus domestica HOM05D001472 ORTHO05D002655 3.6e-08 61.2 107 35.5
A03p37240 Brassica napus HOM05D001472 ORTHO05D002655 4.7e-08 60.8 104 38.5
BraA03t12884Z Brassica rapa HOM05D001472 ORTHO05D002655 4.7e-08 60.8 104 38.5
Thhalv10020276m.g Eutrema salsugineum HOM05D001472 ORTHO05D002655 4.7e-08 60.8 104 38.5
BcaC01g04090 Brassica carinata HOM05D001472 ORTHO05D002655 6.2e-08 60.5 104 37.5
DCAR_001315 Daucus carota HOM05D001472 ORTHO05D002655 6.2e-08 60.5 105 37.1
DCAR_017983 Daucus carota HOM05D001472 ORTHO05D002655 6.2e-08 60.5 106 36.8
Prupe.1G083700 Prunus persica HOM05D001472 ORTHO05D002655 6.2e-08 60.5 107 35.5
Prupe.1G082400 Prunus persica HOM05D001472 ORTHO05D002655 8.1e-08 60.1 107 36.4
PSO210G2861 Papaver somniferum HOM05D001472 ORTHO05D002655 1.1e-07 59.7 107 36.4
AagrBONN_evm.TU.Sc2ySwM_344.1321 Anthoceros agrestis HOM05D001472 ORTHO05D002655 1.4e-07 59.3 29 86.2
CBR_g37546 Chara braunii HOM05D001472 ORTHO05D002655 1.4e-07 59.3 29 86.2
CARHR086260 Cardamine hirsuta HOM05D001472 ORTHO05D002655 1.8e-07 58.9 104 38.5
Mapoly0090s0010 Marchantia polymorpha HOM05D001472 ORTHO05D002655 1.8e-07 58.9 110 36.4
SEGI_37908 Sequoiadendron giganteum HOM05D001472 ORTHO05D002655 1.8e-07 58.9 115 34.8
TPR.G9243 Trifolium pratense HOM05D001472 ORTHO05D002655 1.8e-07 58.9 106 34.9
Zm00001eb219500 Zea mays HOM05D001472 ORTHO05D002655 1.8e-07 58.9 104 36.5
Aqoxy6G00349 Aquilegia oxysepala HOM05D001472 ORTHO05D002655 2.4e-07 58.5 98 36.7
Haze_21945 Corylus avellana HOM05D001472 ORTHO05D002655 2.4e-07 58.5 29 86.2
Manes.10G055800 Manihot esculenta HOM05D001472 ORTHO05D002655 2.4e-07 58.5 104 34.6
Zm00001eb049290 Zea mays HOM05D001472 ORTHO05D002655 3.1e-07 58.2 104 37.5
DCAR_006308 Daucus carota HOM05D001472 ORTHO05D002655 4.0e-07 57.8 123 34.1
Medtr4g127790 Medicago truncatula HOM05D001472 ORTHO05D002655 6.8e-07 57.0 108 33.3
Nn4g24615 Nelumbo nucifera HOM05D001472 ORTHO05D002655 6.8e-07 57.0 29 82.8
Os03g0586800 Oryza sativa ssp. japonica HOM05D001472 ORTHO05D002655 6.8e-07 57.0 29 82.8
Phvul.003G107000 Phaseolus vulgaris HOM05D001472 ORTHO05D002655 6.8e-07 57.0 29 82.8
BcaB06g25588 Brassica carinata HOM05D001472 ORTHO05D002655 8.9e-07 56.6 29 82.8
C05p56200 Brassica napus HOM05D001472 ORTHO05D002655 8.9e-07 56.6 29 82.8
Cre03.g160500 Chlamydomonas reinhardtii HOM05D001472 ORTHO05D002655 8.9e-07 56.6 29 82.8
FvH4_4g07860 Fragaria vesca HOM05D001472 ORTHO05D002655 8.9e-07 56.6 106 34.9
FAN12G1162 Fragaria x ananassa HOM05D001472 ORTHO05D002655 8.9e-07 56.6 106 34.9
FAN22G1251 Fragaria x ananassa HOM05D001472 ORTHO05D002655 8.9e-07 56.6 106 34.9
FAN17G1624 Fragaria x ananassa HOM05D001472 ORTHO05D002655 1.2e-06 56.2 106 34.9
Pp3c12_20520 Physcomitrium patens HOM05D001472 ORTHO05D002655 1.2e-06 56.2 29 82.8
Pp3c4_7510 Physcomitrium patens HOM05D001472 ORTHO05D002655 1.2e-06 56.2 29 82.8
FAN07G2522 Fragaria x ananassa HOM05D001472 ORTHO05D002655 1.5e-06 55.8 106 34.9
vmacro06005 Vaccinium macrocarpon HOM05D001472 ORTHO05D002655 1.5e-06 55.8 27 88.9
CDE10G1081 Ceratophyllum demersum HOM05D001472 ORTHO05D002655 2.0e-06 55.5 29 75.9
MD13G1248200 Malus domestica HOM05D001472 ORTHO05D002655 2.0e-06 55.5 107 32.7
Medtr4g127770 Medicago truncatula HOM05D001472 ORTHO05D002655 2.0e-06 55.5 104 32.7
PRCOL_00000537 Prasinoderma coloniale HOM05D001472 ORTHO05D002655 2.0e-06 55.5 29 75.9
QL06p041099 Quercus lobata HOM05D001472 ORTHO05D002655 2.0e-06 55.5 109 34.9
Rhsim12G0084100 Rhododendron simsii HOM05D001472 ORTHO05D002655 2.0e-06 55.5 29 82.8
SEGI_22674 Sequoiadendron giganteum HOM05D001472 ORTHO05D002655 2.0e-06 55.5 29 79.3
Dinv19557 Davidia involucrata HOM05D001472 ORTHO05D002655 3.4e-06 54.7 29 79.3
ATR1136G155 Amborella trichopoda HOM05D001472 ORTHO05D002655 7.6e-06 53.5 29 75.9
Ah.07g202250 Amaranthus hybridus HOM05D001472 ORTHO05D002655 9.9e-06 53.1 27 85.2
Sc07g0006990 Simmondsia chinensis HOM05D001472 ORTHO05D002655 9.9e-06 53.1 29 75.9


User provided reference genes

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