Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 6.5e-105 384.0 188 100.0
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 7.4e-101 370.5 188 95.7
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.3e-100 369.8 188 94.7
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 1.3e-100 369.8 188 95.2
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 1.6e-100 369.4 188 95.2
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 1.6e-100 369.4 188 95.2
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.1e-99 366.7 188 93.1
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 2.4e-99 365.5 188 93.6
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 2.6e-93 345.5 188 88.8
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 4.4e-93 344.7 188 87.8
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 1.7e-92 342.8 188 87.2
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 1.7e-92 342.8 188 87.2
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 87.2
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 4.8e-92 341.3 188 87.8
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 87.2
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 3.4e-90 335.1 188 85.6
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 4.5e-90 334.7 188 84.0
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.3e-89 333.2 188 84.6
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 1.3e-89 333.2 188 85.1
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 2.2e-89 332.4 188 84.0
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 83.5
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 82.4
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 84.6
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 1.4e-88 329.7 188 83.5
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 84.0
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 84.0
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 84.0
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 3.2e-88 328.6 188 82.4
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 4.2e-88 328.2 188 84.0
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 4.2e-88 328.2 188 81.4
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 81.9
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 84.6
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 9.4e-88 327.0 189 84.7
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 83.5
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 84.0
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 80.3
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 1.2e-87 326.6 189 85.2
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 1.6e-87 326.2 188 82.4
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.6e-87 326.2 188 84.0
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 1.6e-87 326.2 188 83.5
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 2.1e-87 325.9 180 86.1
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 2.1e-87 325.9 188 82.4
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 83.5
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 83.5
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 83.5
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 83.5
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 83.5
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 83.0
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 83.0
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 84.0
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 81.9
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 81.9
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 81.9
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 81.4
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 1.4e-86 323.2 189 84.1
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 83.0
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 83.0
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 83.0
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 81.4
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 83.5
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 2.3e-86 322.4 188 81.4
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 2.3e-86 322.4 188 83.0
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 2.3e-86 322.4 188 83.5
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 2.3e-86 322.4 188 83.5
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 2.3e-86 322.4 188 84.0
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 3.0e-86 322.0 189 84.7
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 3.9e-86 321.6 188 83.0
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 3.9e-86 321.6 188 83.0
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 3.9e-86 321.6 188 83.0
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 81.4
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 83.0
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 81.9
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 6.7e-86 320.9 187 81.3
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 6.7e-86 320.9 189 84.1
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 8.8e-86 320.5 188 83.0
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 1.5e-85 319.7 188 82.4
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 1.5e-85 319.7 188 82.4
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 1.5e-85 319.7 188 82.4
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 1.5e-85 319.7 188 81.9
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 1.5e-85 319.7 188 80.9
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 80.9
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 3.3e-85 318.5 188 81.4
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 4.4e-85 318.2 188 81.9
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 4.4e-85 318.2 188 81.4
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 81.9
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 81.9
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 7.4e-85 317.4 190 82.6
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 7.4e-85 317.4 190 82.6
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 81.9
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 79.8
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 79.8
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 9.7e-85 317.0 188 80.9
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 9.7e-85 317.0 189 83.1
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 9.7e-85 317.0 188 79.3
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 9.7e-85 317.0 188 79.3
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 1.3e-84 316.6 188 81.4
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 1.7e-84 316.2 185 80.5
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 2.8e-84 315.5 188 80.3
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 79.8
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 78.2
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 79.3
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 6.3e-84 314.3 185 79.5
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 6.3e-84 314.3 185 79.5
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.1e-83 313.5 185 80.0
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 1.1e-83 313.5 185 80.0
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 79.3
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 78.7
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 9.1e-83 310.5 185 79.5
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.2e-82 310.1 188 78.7
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 1.2e-82 310.1 179 83.2
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 7.7e-82 307.4 188 76.6
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 1.7e-81 306.2 188 78.7
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.7e-81 306.2 188 76.6
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 2.9e-81 305.4 188 78.7
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 2.1e-79 299.3 188 76.6
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 6.1e-79 297.7 188 77.7
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 6.1e-79 297.7 188 75.5
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 8.0e-79 297.4 180 76.7
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 2.3e-78 295.8 188 74.5
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 2.3e-78 295.8 188 75.5
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 4.0e-78 295.0 188 78.7
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 6.7e-78 294.3 190 75.8
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 2.6e-77 292.4 190 75.8
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 2.2e-76 289.3 188 75.0
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.1e-75 287.0 174 79.9
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 2.4e-75 285.8 169 79.3
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 5.3e-75 284.6 188 72.3
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 1.1e-72 276.9 188 69.7
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 1.5e-72 276.6 188 67.6
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 2.5e-72 275.8 188 70.2
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 2.5e-72 275.8 188 70.2
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 7.2e-72 274.2 179 74.9
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 2.1e-71 272.7 188 70.7
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 3.6e-71 271.9 188 72.3
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 4.7e-71 271.6 179 74.3
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 5.7e-69 264.6 177 74.0
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.3e-68 263.5 188 71.8
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 1.7e-68 263.1 189 67.7
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.6e-66 256.5 188 70.2
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 2.3e-65 252.7 187 63.6
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 1.1e-64 250.4 187 65.8
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 9.5e-64 247.3 187 62.6
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 4.0e-62 241.9 181 67.4
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 9.8e-61 237.3 188 58.0
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 5.4e-59 231.5 178 61.2
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 5.6e-56 221.5 188 62.2
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 1.8e-54 216.5 165 69.7
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 2.5e-48 196.1 187 50.8
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 2.1e-47 193.0 115 80.0
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 1.7e-44 183.3 119 73.1
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.1e-40 170.6 173 56.6
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 2.5e-40 169.5 109 75.2
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 9.5e-40 167.5 188 51.6
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 1.6e-39 166.8 127 63.8
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 1.5e-37 160.2 123 66.7
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 2.6e-37 159.5 85 88.2
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 7.6e-29 131.3 79 75.9
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 1.9e-24 116.7 64 82.8
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 2.1e-23 113.2 92 64.1
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 3.5e-10 69.3 35 88.6
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 9.6e-08 61.2 39 71.8
Cfa022336 Carpinus fangiana HOM05D004362 ORTHO05D122733 1.6e-07 60.5 75 44.0
Peaxi162Scf00096g00093 Petunia axillaris HOM05D004362 ORTHO05D306384 1.8e-06 57.0 65 52.3


User provided reference genes

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