Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 3.5e-101 371.7 196 100.0
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 7.5e-88 327.4 203 88.7
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 1.4e-86 323.2 203 87.2
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 2.7e-85 318.9 204 86.3
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 1.1e-83 313.5 204 85.3
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 4.3e-83 311.6 202 85.1
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 4.1e-70 268.5 193 74.6
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 6.6e-68 261.2 209 65.1
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 3.3e-67 258.8 203 68.0
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.2e-66 256.9 203 68.0
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.2e-66 256.9 197 73.1
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 6.2e-66 254.6 212 64.6
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 2.3e-65 252.7 200 66.5
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 3.4e-64 248.8 177 72.3
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 3.4e-64 248.8 192 66.7
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 3.7e-63 245.4 209 67.0
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 3.7e-63 245.4 195 66.2
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 4.1e-62 241.9 182 74.2
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 2.1e-61 239.6 205 62.9
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 6.0e-61 238.0 200 64.5
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 7.8e-61 237.7 202 71.8
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 3.0e-60 235.7 205 66.3
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 3.9e-60 235.3 203 63.1
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 3.9e-60 235.3 202 62.9
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 5.1e-60 235.0 194 67.0
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 5.1e-60 235.0 200 64.0
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 8.6e-60 234.2 199 65.3
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 1.5e-59 233.4 210 62.9
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 1.9e-59 233.0 221 60.2
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 3.3e-59 232.3 203 62.6
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 4.3e-59 231.9 210 66.7
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 5.6e-59 231.5 198 63.6
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 7.3e-59 231.1 203 62.6
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 1.2e-58 230.3 204 61.8
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 2.1e-58 229.6 187 65.8
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 2.1e-58 229.6 200 62.0
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 2.1e-58 229.6 179 67.0
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 2.1e-58 229.6 142 77.5
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 4.7e-58 228.4 207 64.3
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 4.7e-58 228.4 200 66.0
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 6.2e-58 228.0 197 60.9
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 6.2e-58 228.0 200 62.0
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 8.1e-58 227.6 199 66.8
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.4e-57 226.9 200 61.5
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.8e-57 226.5 200 63.0
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 1.8e-57 226.5 198 64.1
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 2.4e-57 226.1 213 62.9
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 2.4e-57 226.1 195 63.6
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.4e-57 226.1 200 63.0
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 3.1e-57 225.7 211 64.9
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 3.1e-57 225.7 205 60.0
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 5.2e-57 224.9 201 63.2
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 6.8e-57 224.6 204 62.3
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 8.9e-57 224.2 198 61.6
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 8.9e-57 224.2 213 66.2
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 2.0e-56 223.0 200 65.0
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 5.8e-56 221.5 197 61.9
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 9.9e-56 220.7 197 61.9
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 1.7e-55 219.9 204 63.7
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 2.2e-55 219.5 145 72.4
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 2.9e-55 219.2 210 63.3
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 1.4e-54 216.9 143 77.6
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 3.2e-54 215.7 182 67.6
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 4.2e-54 215.3 182 63.2
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 5.4e-54 214.9 146 78.1
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 5.4e-54 214.9 193 66.3
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 1.2e-53 213.8 171 66.7
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 2.1e-53 213.0 115 86.1
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.1e-53 213.0 193 60.1
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 4.6e-53 211.8 175 64.0
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 4.6e-53 211.8 115 82.6
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 6.0e-53 211.5 192 59.9
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 1.0e-52 210.7 178 61.2
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 1.0e-52 210.7 190 57.9
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 1.3e-52 210.3 114 85.1
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 1.3e-52 210.3 188 61.2
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 1.3e-52 210.3 188 61.2
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 1.7e-52 209.9 195 57.9
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 3.9e-52 208.8 168 68.5
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 6.6e-52 208.0 197 57.4
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 1.1e-51 207.2 181 58.0
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 1.5e-51 206.8 114 83.3
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 1.5e-51 206.8 203 55.2
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.9e-51 206.5 194 58.8
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 2.1e-50 203.0 113 82.3
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 2.1e-50 203.0 202 54.0
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 2.8e-50 202.6 113 82.3
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 3.6e-50 202.2 203 57.6
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 3.6e-50 202.2 113 82.3
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 3.6e-50 202.2 113 78.8
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 1.1e-49 200.7 197 54.8
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 1.8e-49 199.9 149 67.8
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 3.1e-49 199.1 113 77.9
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 4.0e-49 198.7 112 81.2
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 6.9e-49 198.0 112 81.2
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 6.9e-49 198.0 112 81.2
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 6.9e-49 198.0 112 81.2
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 6.9e-49 198.0 112 81.2
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 6.9e-49 198.0 112 81.2
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 9.0e-49 197.6 111 82.0
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 1.5e-48 196.8 147 64.6
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 5.8e-48 194.9 157 72.6
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 5.8e-48 194.9 198 55.1
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 8.4e-47 191.0 194 56.7
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 3.2e-46 189.1 149 66.4
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 4.2e-46 188.7 174 59.2
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 1.2e-45 187.2 170 59.4
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 1.7e-44 183.3 160 56.9
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 2.3e-44 183.0 177 62.7
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 8.7e-44 181.0 163 64.4
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.9e-43 179.9 116 73.3
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.9e-43 179.9 147 69.4
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 2.5e-43 179.5 116 72.4
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 1.6e-42 176.8 191 50.3
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.1e-41 174.1 109 76.1
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 2.6e-40 169.5 113 68.1
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 2.6e-40 169.5 109 74.3
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 7.6e-40 167.9 112 69.6
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 9.9e-40 167.5 108 71.3
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 3.8e-39 165.6 109 67.0
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 4.9e-39 165.2 113 67.3
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 3.0e-36 156.0 180 55.6
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 7.9e-29 131.3 113 52.2
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 1.0e-28 131.0 109 55.0
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 4.9e-23 112.1 160 38.8
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 8.4e-23 111.3 108 50.9
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 9.0e-17 91.3 84 52.4
Actinidia36920 Actinidia chinensis HOM05D006377 ORTHO05D057244 2.6e-08 63.2 123 38.2


User provided reference genes

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