Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1317.3 Capsicum annuum HOM05D000068 ORTHO05D043449 4.0e-44 181.0 90 100.0
Solyc09g008240.3 Solanum lycopersicum HOM05D000068 ORTHO05D000084 1.8e-20 102.4 100 56.0
Sopen09g003060 Solanum pennellii HOM05D000068 ORTHO05D000084 1.8e-20 102.4 100 56.0
PGSC0003DMG400003889 Solanum tuberosum HOM05D000068 ORTHO05D000084 1.8e-20 102.4 100 56.0
Peaxi162Scf00847g00008 Petunia axillaris HOM05D000068 ORTHO05D000084 1.2e-19 99.8 99 53.5
CAN.G900.28 Capsicum annuum HOM05D000068 ORTHO05D000084 2.9e-18 95.1 99 53.5
Nitab4.5_0008455g0010 Nicotiana tabacum HOM05D000068 ORTHO05D000084 1.9e-17 92.4 101 53.5
Nitab4.5_0003861g0020 Nicotiana tabacum HOM05D000068 ORTHO05D000084 2.4e-17 92.0 101 53.5
Actinidia32490 Actinidia chinensis HOM05D000068 ORTHO05D000084 5.4e-17 90.9 99 49.5
Oeu053681.1 Olea europaea HOM05D000068 ORTHO05D000084 5.4e-17 90.9 97 51.5
Gorai.002G246800 Gossypium raimondii HOM05D000068 ORTHO05D000084 9.2e-17 90.1 99 49.5
PGR142G1384 Punica granatum HOM05D000068 ORTHO05D000084 2.1e-16 89.0 44 90.9
Hma1.2p1_0205F.1_g086980 Hydrangea macrophylla HOM05D000068 ORTHO05D000084 3.5e-16 88.2 98 48.0
Actinidia08769 Actinidia chinensis HOM05D000068 ORTHO05D000084 4.6e-16 87.8 98 48.0
Gohir.A01G213400 Gossypium hirsutum HOM05D000068 ORTHO05D000084 4.6e-16 87.8 99 48.5
ClCG10G020090 Citrullus lanatus HOM05D000068 ORTHO05D000084 1.0e-15 86.7 44 88.6
MELO3C009358.2 Cucumis melo HOM05D000068 ORTHO05D043449 1.0e-15 86.7 44 88.6
CsaV3_3G035990 Cucumis sativus L. HOM05D000068 ORTHO05D000084 1.0e-15 86.7 44 88.6
DCAR_015001 Daucus carota HOM05D000068 ORTHO05D000084 1.0e-15 86.7 98 48.0
Sed0018529 Sechium edule HOM05D000068 ORTHO05D000084 1.0e-15 86.7 44 88.6
TWI74G0168 Tripterygium wilfordii HOM05D000068 ORTHO05D000084 1.7e-15 85.9 91 50.5
Ah.08g211600 Amaranthus hybridus HOM05D000068 ORTHO05D000084 2.3e-15 85.5 100 48.0
Glyma.03G183600 Glycine max HOM05D000068 ORTHO05D000084 2.3e-15 85.5 89 50.6
PSO063G2543 Papaver somniferum HOM05D000068 ORTHO05D000084 2.3e-15 85.5 99 49.5
Sc20g0005530 Simmondsia chinensis HOM05D000068 ORTHO05D000084 2.3e-15 85.5 93 48.4
Atru.chr8.1797 Acer truncatum HOM05D000068 ORTHO05D000084 5.1e-15 84.3 44 86.4
Actinidia28906 Actinidia chinensis HOM05D000068 ORTHO05D000084 5.1e-15 84.3 98 46.9
Glyma.19G184300 Glycine max HOM05D000068 ORTHO05D000084 5.1e-15 84.3 44 86.4
Lj1g0014306 Lotus japonicus HOM05D000068 ORTHO05D000084 5.1e-15 84.3 97 47.4
Phvul.001G179300 Phaseolus vulgaris HOM05D000068 ORTHO05D000084 5.1e-15 84.3 44 86.4
VMungo1383G0873 Vigna mungo HOM05D000068 ORTHO05D000084 5.1e-15 84.3 44 86.4
Ah.15g092550 Amaranthus hybridus HOM05D000068 ORTHO05D000084 6.6e-15 84.0 100 47.0
CSS0019883 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D000084 6.6e-15 84.0 99 45.5
CSS0023380 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D000084 6.6e-15 84.0 99 45.5
Gohir.A09G146300 Gossypium hirsutum HOM05D000068 ORTHO05D000084 6.6e-15 84.0 95 48.4
Gohir.D09G142000 Gossypium hirsutum HOM05D000068 ORTHO05D000084 6.6e-15 84.0 95 48.4
Gorai.006G163000 Gossypium raimondii HOM05D000068 ORTHO05D000084 6.6e-15 84.0 95 48.4
MSTRG.5765 Avicennia marina HOM05D000068 ORTHO05D000084 8.7e-15 83.6 44 86.4
AUR62042509 Chenopodium quinoa HOM05D000068 ORTHO05D000084 8.7e-15 83.6 92 46.7
Duzib093G0274 Durio zibethinus HOM05D000068 ORTHO05D000084 8.7e-15 83.6 92 50.0
Lj3C986T15 Lonicera japonica HOM05D000068 ORTHO05D000084 8.7e-15 83.6 44 86.4
Manes.08G011100 Manihot esculenta HOM05D000068 ORTHO05D000084 8.7e-15 83.6 44 88.6
Ca_11507_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 1.1e-14 83.2 44 84.1
Ca_29752_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 1.1e-14 83.2 44 84.1
Glyma.10G055000 Glycine max HOM05D000068 ORTHO05D000084 1.1e-14 83.2 44 84.1
Glyma.13G142100 Glycine max HOM05D000068 ORTHO05D000084 1.1e-14 83.2 44 84.1
Lalb_Chr25g0288961 Lupinus albus HOM05D000068 ORTHO05D000084 1.1e-14 83.2 44 84.1
PSO339G5870 Papaver somniferum HOM05D000068 ORTHO05D000084 1.1e-14 83.2 99 48.5
Sed0013100 Sechium edule HOM05D000068 ORTHO05D000084 1.1e-14 83.2 44 86.4
TAR623G0718 Trochodendron aralioides HOM05D000068 ORTHO05D000084 1.1e-14 83.2 100 48.0
Psat3g191040 Pisum sativum HOM05D000068 ORTHO05D000084 1.5e-14 82.8 44 86.4
Hund20363 Selenicereus undatus HOM05D000068 ORTHO05D000084 1.5e-14 82.8 44 84.1
SGA_v2.0_scaffold40G15521 Striga asiatica HOM05D000068 ORTHO05D000084 1.5e-14 82.8 89 50.6
arahy.Tifrunner.gnm1.ann1.I8RYIH Arachis hypogaea HOM05D000068 ORTHO05D000084 1.9e-14 82.4 44 84.1
arahy.Tifrunner.gnm1.ann1.UMX69X Arachis hypogaea HOM05D000068 ORTHO05D000084 1.9e-14 82.4 44 84.1
MSTRG.10324 Avicennia marina HOM05D000068 ORTHO05D000084 1.9e-14 82.4 44 84.1
Lj2A121T42 Lonicera japonica HOM05D000068 ORTHO05D000084 1.9e-14 82.4 98 46.9
Lalb_Chr01g0018681 Lupinus albus HOM05D000068 ORTHO05D000084 1.9e-14 82.4 44 84.1
Manes.09G065700 Manihot esculenta HOM05D000068 ORTHO05D000084 1.9e-14 82.4 44 86.4
Medtr7g102070 Medicago truncatula HOM05D000068 ORTHO05D000084 1.9e-14 82.4 99 44.4
SalBow3G2918 Salvia bowleyana HOM05D000068 ORTHO05D000084 1.9e-14 82.4 99 46.5
CiPaw.09G172000 Carya illinoinensis HOM05D000068 ORTHO05D000084 2.5e-14 82.0 91 49.5
COL.COLO4_26954 Corchorus olitorius HOM05D000068 ORTHO05D000084 2.5e-14 82.0 92 50.0
DCAR_020814 Daucus carota HOM05D000068 ORTHO05D000084 2.5e-14 82.0 50 76.0
HanXRQChr14g0454451 Helianthus annuus HOM05D000068 ORTHO05D000084 2.5e-14 82.0 44 81.8
MD04G1092800 Malus domestica HOM05D000068 ORTHO05D000084 2.5e-14 82.0 96 46.9
Aqoxy1G01148_Aqoxy1G01149 Aquilegia oxysepala HOM05D000068 ORTHO05D000084 3.3e-14 81.6 98 46.9
CANSAT80G0311 Cannabis sativa HOM05D000068 ORTHO05D000084 3.3e-14 81.6 91 50.5
ECA238G0513 Erigeron canadensis HOM05D000068 ORTHO05D000084 3.3e-14 81.6 44 81.8
Lsat_1_v5_gn_2_107041 Lactuca sativa HOM05D000068 ORTHO05D000084 3.3e-14 81.6 44 81.8
Psat6g073880 Pisum sativum HOM05D000068 ORTHO05D000084 3.3e-14 81.6 44 84.1
arahy.Tifrunner.gnm1.ann1.P2ZBX8 Arachis hypogaea HOM05D000068 ORTHO05D000084 4.3e-14 81.3 44 81.8
arahy.Tifrunner.gnm1.ann1.W0RWMP Arachis hypogaea HOM05D000068 ORTHO05D000084 4.3e-14 81.3 44 81.8
EL10Ac7g16637 Beta vulgaris HOM05D000068 ORTHO05D000084 4.3e-14 81.3 44 81.8
Cfa017618 Carpinus fangiana HOM05D000068 ORTHO05D000084 4.3e-14 81.3 91 48.4
Haze_20540 Corylus avellana HOM05D000068 ORTHO05D000084 4.3e-14 81.3 91 48.4
Migut.J00652 Erythranthe guttata HOM05D000068 ORTHO05D000084 4.3e-14 81.3 96 47.9
Phvul.007G147400 Phaseolus vulgaris HOM05D000068 ORTHO05D000084 4.3e-14 81.3 44 81.8
Psat3g042320 Pisum sativum HOM05D000068 ORTHO05D000084 4.3e-14 81.3 44 81.8
TPR.G32830 Trifolium pratense HOM05D000068 ORTHO05D000084 4.3e-14 81.3 44 81.8
vmacro07294 Vaccinium macrocarpon HOM05D000068 ORTHO05D000084 4.3e-14 81.3 44 84.1
Aa31LG5G22140 Aethionema arabicum HOM05D000068 ORTHO05D000084 5.6e-14 80.9 44 84.1
BcaC02g07568 Brassica carinata HOM05D000068 ORTHO05D000084 5.6e-14 80.9 44 84.1
BolC4t28049H Brassica oleracea HOM05D000068 ORTHO05D000084 5.6e-14 80.9 44 84.1
AUR62040338 Chenopodium quinoa HOM05D000068 ORTHO05D000084 5.6e-14 80.9 89 47.2
Ciclev10010916m.g Citrus clementina HOM05D000068 ORTHO05D000084 5.6e-14 80.9 50 74.0
Eucgr.K02930 Eucalyptus grandis HOM05D000068 ORTHO05D000084 5.6e-14 80.9 89 50.6
MBI18_g27466_MAGBIO Magnolia biondii HOM05D000068 ORTHO05D000084 5.6e-14 80.9 91 49.5
GSVIVG01033645001 Vitis vinifera HOM05D000068 ORTHO05D000084 5.6e-14 80.9 44 81.8
CSS0022715 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D000084 7.3e-14 80.5 44 79.5
CSS0023617 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D000084 7.3e-14 80.5 44 79.5
Cpa.g.sc102.36 Carica papaya HOM05D000068 ORTHO05D000084 7.3e-14 80.5 98 46.9
Cc06_g04260 Coffea canephora HOM05D000068 ORTHO05D000084 7.3e-14 80.5 44 81.8
ECA248G3519 Erigeron canadensis HOM05D000068 ORTHO05D000084 7.3e-14 80.5 44 79.5
Potri.006G123900 Populus trichocarpa HOM05D000068 ORTHO05D000084 7.3e-14 80.5 44 84.1
Potri.016G093600 Populus trichocarpa HOM05D000068 ORTHO05D000084 7.3e-14 80.5 44 84.1
Sabra06G0098100 Salix brachista HOM05D000068 ORTHO05D000084 7.3e-14 80.5 44 84.1
Prupe.7G129600 Prunus persica HOM05D000068 ORTHO05D000084 9.6e-14 80.1 90 48.9
QL07p043210 Quercus lobata HOM05D000068 ORTHO05D000084 9.6e-14 80.1 91 48.4
SalBow5G1685 Salvia bowleyana HOM05D000068 ORTHO05D000084 9.6e-14 80.1 44 81.8
VMungo0720G1516 Vigna mungo HOM05D000068 ORTHO05D000084 9.6e-14 80.1 44 79.5
RcHm_v2.0_Chr3g0470311 Rosa chinensis HOM05D000068 ORTHO05D000084 1.2e-13 79.7 90 48.9
Ca_08906_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 1.6e-13 79.3 44 79.5
Migut.L01707 Erythranthe guttata HOM05D000068 ORTHO05D000084 1.6e-13 79.3 44 79.5
HanXRQChr02g0048421 Helianthus annuus HOM05D000068 ORTHO05D000084 1.6e-13 79.3 44 79.5
Aqoxy2G01747 Aquilegia oxysepala HOM05D000068 ORTHO05D000084 2.1e-13 79.0 44 79.5
BcaB01g03808 Brassica carinata HOM05D000068 ORTHO05D000084 2.1e-13 79.0 44 81.8
BcaC01g05635 Brassica carinata HOM05D000068 ORTHO05D000084 2.1e-13 79.0 44 81.8
A03p20320 Brassica napus HOM05D000068 ORTHO05D000084 2.1e-13 79.0 44 81.8
A04p28230 Brassica napus HOM05D000068 ORTHO05D000084 2.1e-13 79.0 44 81.8
C03p23880 Brassica napus HOM05D000068 ORTHO05D000084 2.1e-13 79.0 44 81.8
C04p65590 Brassica napus HOM05D000068 ORTHO05D000084 2.1e-13 79.0 44 81.8
BolC3t14780H Brassica oleracea HOM05D000068 ORTHO05D000084 2.1e-13 79.0 44 81.8
BraA03t11278Z Brassica rapa HOM05D000068 ORTHO05D000084 2.1e-13 79.0 44 81.8
BraA04t18307Z Brassica rapa HOM05D000068 ORTHO05D000084 2.1e-13 79.0 44 81.8
CARHR131390 Cardamine hirsuta HOM05D000068 ORTHO05D000084 2.1e-13 79.0 44 81.8
Thhalv10016150m.g Eutrema salsugineum HOM05D000068 ORTHO05D000084 2.1e-13 79.0 44 81.8
HanXRQChr01g0027761 Helianthus annuus HOM05D000068 ORTHO05D000084 2.1e-13 79.0 44 79.5
Lsat_1_v5_gn_1_52361 Lactuca sativa HOM05D000068 ORTHO05D000084 2.1e-13 79.0 44 79.5
Sp4g19210 Schrenkiella parvula HOM05D000068 ORTHO05D000084 2.1e-13 79.0 44 81.8
THA.LOC104807060 Tarenaya hassleriana HOM05D000068 ORTHO05D000084 2.1e-13 79.0 44 81.8
Medtr1g063170 Medicago truncatula HOM05D000068 ORTHO05D000084 2.8e-13 78.6 44 81.8
Nn6g35285 Nelumbo nucifera HOM05D000068 ORTHO05D000084 2.8e-13 78.6 44 79.5
Nn2g13803 Nelumbo nucifera HOM05D000068 ORTHO05D000084 3.6e-13 78.2 44 79.5
AL4G33140 Arabidopsis lyrata HOM05D000068 ORTHO05D000084 4.7e-13 77.8 44 79.5
Rhsim03G0091100 Rhododendron simsii HOM05D000068 ORTHO05D000084 1.1e-12 76.6 44 75.0
SGA_v2.0_scaffold75G24849 Striga asiatica HOM05D000068 ORTHO05D000084 1.8e-12 75.9 44 75.0
ATR1126G028 Amborella trichopoda HOM05D000068 ORTHO05D000084 2.4e-12 75.5 44 77.3
Sabra16G0098700 Salix brachista HOM05D000068 ORTHO05D000084 2.4e-12 75.5 44 77.3
AT2G36910 Arabidopsis thaliana HOM05D000068 ORTHO05D000084 3.1e-12 75.1 44 75.0
Psat3g191120 Pisum sativum HOM05D000068 ORTHO05D000084 5.3e-12 74.3 44 77.3
DCAR_017678 Daucus carota HOM05D000068 ORTHO05D000084 6.9e-12 73.9 44 72.7
PSO339G0669 Papaver somniferum HOM05D000068 ORTHO05D000084 6.9e-12 73.9 44 72.7
PSO801G0252 Papaver somniferum HOM05D000068 ORTHO05D000084 6.9e-12 73.9 44 72.7
HPP92_007176 Vanilla planifolia HOM05D000068 ORTHO05D000084 9.0e-12 73.6 44 72.7
FAN09G0132 Fragaria x ananassa HOM05D000068 ORTHO05D000084 1.2e-11 73.2 44 75.0
TAR633G2707 Trochodendron aralioides HOM05D000068 ORTHO05D000084 1.2e-11 73.2 44 75.0
FvH4_6g16450 Fragaria vesca HOM05D000068 ORTHO05D000084 1.5e-11 72.8 44 75.0
FAN02G0969 Fragaria x ananassa HOM05D000068 ORTHO05D000084 1.5e-11 72.8 44 75.0
FAN05G3771 Fragaria x ananassa HOM05D000068 ORTHO05D000084 1.5e-11 72.8 44 75.0
HanXRQChr11g0350511 Helianthus annuus HOM05D000068 ORTHO05D000084 2.6e-11 72.0 44 70.5
FAN14G0903 Fragaria x ananassa HOM05D000068 ORTHO05D000084 4.4e-11 71.2 44 72.7
unitig_22.g5099 Utricularia gibba HOM05D000068 ORTHO05D000084 4.4e-11 71.2 44 70.5
Zm00001eb038710 Zea mays HOM05D000068 ORTHO05D000084 4.4e-11 71.2 50 64.0
Os08g0564300 Oryza sativa ssp. japonica HOM05D000068 ORTHO05D000084 8.4e-10 67.0 50 62.0
CDE09G1185 Ceratophyllum demersum HOM05D000068 ORTHO05D000084 4.2e-09 64.7 50 58.0
CDE02G0757 Ceratophyllum demersum HOM05D000068 ORTHO05D000084 9.3e-09 63.5 50 58.0
MELO3C009361.2 Cucumis melo HOM05D000068 ORTHO05D000084 7.3e-06 53.9 81 44.4


User provided reference genes

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