Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 9.4e-68 260.4 164 100.0
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 1.6e-54 216.5 157 91.7
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 4.9e-48 194.9 146 87.7
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 1.6e-46 189.9 146 86.3
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 2.0e-46 189.5 146 86.3
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 7.8e-46 187.6 146 84.9
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 8.6e-45 184.1 146 84.9
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 1.5e-44 183.3 143 84.6
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.5e-41 173.3 146 78.8
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 2.6e-41 172.6 146 78.8
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 6.6e-37 157.9 141 51.8
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 3.3e-36 155.6 141 71.6
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 7.3e-36 154.5 148 72.3
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 9.5e-36 154.1 148 72.3
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 6.8e-34 147.9 148 68.9
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 8.9e-34 147.5 147 70.1
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 1.5e-33 146.7 137 74.5
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 2.0e-33 146.4 137 73.0
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 3.4e-33 145.6 140 72.1
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 7.5e-33 144.4 132 75.8
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 9.8e-33 144.1 137 72.3
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 1.3e-32 143.7 137 68.6
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 2.9e-32 142.5 141 68.8
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 3.7e-32 142.1 130 76.2
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 4.9e-32 141.7 137 67.9
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 6.4e-32 141.4 141 69.5
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 6.4e-32 141.4 142 69.0
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 6.4e-32 141.4 133 71.4
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 1.1e-31 140.6 136 71.3
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 1.1e-31 140.6 137 70.8
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 1.1e-31 140.6 138 60.9
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 1.1e-31 140.6 136 70.6
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 1.9e-31 139.8 128 71.1
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 1.9e-31 139.8 131 63.4
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 1.9e-31 139.8 130 70.8
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 2.4e-31 139.4 133 70.7
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 3.2e-31 139.0 136 71.3
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 4.1e-31 138.7 136 71.3
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 9.2e-31 137.5 140 66.4
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 1.2e-30 137.1 131 70.2
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 1.2e-30 137.1 140 70.7
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 2.1e-30 136.3 130 70.8
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 3.5e-30 135.6 137 71.5
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 4.6e-30 135.2 136 65.4
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 4.6e-30 135.2 129 72.1
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 4.6e-30 135.2 130 70.0
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 6.0e-30 134.8 136 69.9
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 1.0e-29 134.0 88 67.0
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 1.3e-29 133.7 144 66.0
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 1.3e-29 133.7 142 53.5
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 3.0e-29 132.5 131 68.7
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 3.9e-29 132.1 134 56.7
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 3.9e-29 132.1 131 69.5
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 3.9e-29 132.1 136 68.4
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 5.0e-29 131.7 129 68.2
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 8.6e-29 131.0 131 67.2
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 2.5e-28 129.4 137 67.9
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 3.3e-28 129.0 138 65.9
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 3.3e-28 129.0 131 66.4
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 7.3e-28 127.9 139 64.7
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 8.1e-27 124.4 122 73.0
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 8.1e-27 124.4 130 65.4
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 8.1e-27 124.4 131 50.4
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 2.3e-26 122.9 137 62.8
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 4.0e-26 122.1 128 72.7
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 5.2e-26 121.7 83 62.7
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 1.5e-25 120.2 121 72.7
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 2.0e-25 119.8 119 69.7
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 2.6e-25 119.4 141 62.4
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 3.4e-25 119.0 141 61.0
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 4.4e-25 118.6 131 64.9
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 5.8e-25 118.2 125 47.2
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 5.8e-25 118.2 131 67.2
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 7.5e-25 117.9 127 67.7
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 9.9e-25 117.5 120 72.5
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 1.3e-24 117.1 130 60.8
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 3.7e-24 115.5 130 62.3
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 4.9e-24 115.2 132 62.1
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 6.4e-24 114.8 129 61.2
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 8.3e-24 114.4 140 59.3
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 3.2e-23 112.5 127 63.8
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 1.6e-22 110.2 127 62.2
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 1.6e-22 110.2 127 62.2
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 3.5e-22 109.0 127 63.0
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 4.6e-22 108.6 130 60.0
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 1.0e-21 107.5 81 51.9
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 1.0e-21 107.5 127 59.8
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 1.0e-21 107.5 84 51.2
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 1.0e-21 107.5 129 58.9
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 1.0e-21 107.5 131 58.8
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 1.0e-21 107.5 131 58.8
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 1.3e-21 107.1 131 58.0
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 1.7e-21 106.7 131 58.0
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 3.9e-21 105.5 137 58.4
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 5.1e-21 105.1 102 80.4
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 6.6e-21 104.8 131 55.7
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 1.1e-20 104.0 113 69.0
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 1.1e-20 104.0 129 54.3
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 1.9e-20 103.2 118 44.9
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 1.9e-20 103.2 131 56.5
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 2.5e-20 102.8 126 59.5
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 2.5e-20 102.8 136 63.2
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 2.5e-20 102.8 135 54.1
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 1.2e-19 100.5 136 39.0
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 1.2e-19 100.5 82 48.8
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 2.8e-19 99.4 143 38.5
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 8.1e-19 97.8 131 54.2
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 2.6e-17 92.8 135 53.3
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 2.6e-17 92.8 135 53.3
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 3.4e-17 92.4 125 59.2
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 3.8e-16 89.0 132 52.3
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 9.2e-15 84.3 133 42.1
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 2.1e-14 83.2 116 51.7
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 6.0e-14 81.6 96 60.4
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 2.3e-13 79.7 127 48.8
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 2.5e-12 76.3 133 46.6
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 3.3e-12 75.9 147 32.0
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 4.3e-12 75.5 63 50.8
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 4.0e-10 68.9 118 33.1
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 4.0e-10 68.9 118 33.1
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 4.0e-10 68.9 118 33.1
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 1.2e-09 67.4 122 30.3
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 2.0e-09 66.6 118 31.4
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 2.0e-09 66.6 118 31.4
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 1.7e-08 63.5 128 43.8
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.2e-08 63.2 103 48.5
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 2.9e-08 62.8 102 32.4
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 2.9e-08 62.8 118 31.4
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 3.2e-07 59.3 58 44.8


User provided reference genes

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