Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G127.10 Capsicum annuum HOM05D000533 ORTHO05D001069 3.4e-25 117.5 57 100.0
Sopen04g017430 Solanum pennellii HOM05D000533 ORTHO05D001069 8.5e-16 86.3 49 79.6
Psat5g037760 Pisum sativum HOM05D000533 ORTHO05D001069 1.1e-15 85.9 49 75.5
Gohir.A13G086335 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.4e-15 85.5 49 77.6
CAN.G965.3 Capsicum annuum HOM05D000533 ORTHO05D001069 2.5e-15 84.7 49 77.6
Peaxi162Scf00030g02114 Petunia axillaris HOM05D000533 ORTHO05D001069 2.5e-15 84.7 49 77.6
Peaxi162Scf00133g00521 Petunia axillaris HOM05D000533 ORTHO05D001069 2.5e-15 84.7 49 77.6
Solyc00g500087.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.5e-15 84.7 49 77.6
Solyc00g500124.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.5e-15 84.7 49 77.6
Solyc00g500192.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.5e-15 84.7 49 77.6
Solyc00g500280.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.5e-15 84.7 49 77.6
ATR0924G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 3.2e-15 84.3 49 75.5
DCAR_032542 Daucus carota HOM05D000533 ORTHO05D001069 3.2e-15 84.3 49 75.5
Hma1.2p1_0660F.1_g197430 Hydrangea macrophylla HOM05D000533 ORTHO05D001069 3.2e-15 84.3 49 75.5
Medtr2g451380 Medicago truncatula HOM05D000533 ORTHO05D001069 3.2e-15 84.3 49 75.5
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 3.2e-15 84.3 49 75.5
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 3.2e-15 84.3 49 75.5
Psat1g050080 Pisum sativum HOM05D000533 ORTHO05D001069 3.2e-15 84.3 49 75.5
TAR625G0265 Trochodendron aralioides HOM05D000533 ORTHO05D001069 3.2e-15 84.3 49 75.5
Solyc08g022170.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 5.5e-15 83.6 49 77.6
Ah.10g027020 Amaranthus hybridus HOM05D000533 ORTHO05D001069 7.2e-15 83.2 49 73.5
Ah.10g027260 Amaranthus hybridus HOM05D000533 ORTHO05D001069 7.2e-15 83.2 49 73.5
Ah.10g027700 Amaranthus hybridus HOM05D000533 ORTHO05D001069 7.2e-15 83.2 49 73.5
BolC9t56912H Brassica oleracea HOM05D000533 ORTHO05D001069 9.3e-15 82.8 49 75.5
BolC9t56921H Brassica oleracea HOM05D000533 ORTHO05D001069 9.3e-15 82.8 49 75.5
Gohir.1Z049694 Gossypium hirsutum HOM05D000533 ORTHO05D001069 9.3e-15 82.8 49 75.5
Gohir.1Z050466 Gossypium hirsutum HOM05D000533 ORTHO05D001069 9.3e-15 82.8 49 75.5
Gorai.009G313900 Gossypium raimondii HOM05D000533 ORTHO05D001069 9.3e-15 82.8 49 75.5
Psat0s1160g0320 Pisum sativum HOM05D000533 ORTHO05D001069 9.3e-15 82.8 49 73.5
ECA074G0013 Erigeron canadensis HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
HanXRQChr00c0336g0573701 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
HanXRQChr00c0504g0575331 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
HanXRQChr17g0557731 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
Lsat_1_v5_gn_4_118061 Lactuca sativa HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
Lsat_1_v5_gn_4_33860 Lactuca sativa HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
Lsat_1_v5_gn_5_124461 Lactuca sativa HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
Lsat_1_v5_gn_5_821 Lactuca sativa HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
Lsat_1_v5_gn_8_137301 Lactuca sativa HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
Lsat_1_v5_gn_9_115440 Lactuca sativa HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
LjContig00318g0022363 Lotus japonicus HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
LjContig00319g0004717 Lotus japonicus HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
Lalb_Chr07g0191821 Lupinus albus HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
Lalb_Chr15g0080701 Lupinus albus HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
Nn029s41575 Nelumbo nucifera HOM05D000533 ORTHO05D001069 1.2e-14 82.4 49 73.5
Lj2C1238G31 Lonicera japonica HOM05D000533 ORTHO05D001069 1.6e-14 82.0 49 73.5
Lju5009C0T5 Lonicera japonica HOM05D000533 ORTHO05D001069 1.6e-14 82.0 49 73.5
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.6e-14 82.0 49 73.5
PSO548G0122 Papaver somniferum HOM05D000533 ORTHO05D001069 1.6e-14 82.0 49 71.4
QL93p0141_0008 Quercus lobata HOM05D000533 ORTHO05D001069 1.6e-14 82.0 49 71.4
FvH4_c3g00020 Fragaria vesca HOM05D000533 ORTHO05D001069 2.1e-14 81.6 49 69.4
FAN01G2373 Fragaria x ananassa HOM05D000533 ORTHO05D001069 2.1e-14 81.6 49 69.4
Gorai.013G076700 Gossypium raimondii HOM05D000533 ORTHO05D001069 2.1e-14 81.6 49 73.5
Nitab4.5_0006409g0080 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.1e-14 81.6 49 77.6
Psat0s6989g0240 Pisum sativum HOM05D000533 ORTHO05D001069 2.1e-14 81.6 49 73.5
EL10Ac1g02290 Beta vulgaris HOM05D000533 ORTHO05D001069 2.7e-14 81.3 49 71.4
EL10Ac6g14289 Beta vulgaris HOM05D000533 ORTHO05D001069 2.7e-14 81.3 49 71.4
EL10Ac9g21011 Beta vulgaris HOM05D000533 ORTHO05D001069 2.7e-14 81.3 49 71.4
Eucgr.B00847 Eucalyptus grandis HOM05D000533 ORTHO05D001069 2.7e-14 81.3 49 71.4
PGR111G0062 Punica granatum HOM05D000533 ORTHO05D001069 2.7e-14 81.3 49 71.4
Sed0009234 Sechium edule HOM05D000533 ORTHO05D001069 2.7e-14 81.3 49 71.4
Sed0015694 Sechium edule HOM05D000533 ORTHO05D001069 2.7e-14 81.3 49 71.4
Sed0022513 Sechium edule HOM05D000533 ORTHO05D001069 2.7e-14 81.3 49 71.4
ATCG01110 Arabidopsis thaliana HOM05D000533 ORTHO05D001069 3.6e-14 80.9 48 75.0
C05p53840 Brassica napus HOM05D000533 ORTHO05D001069 3.6e-14 80.9 48 75.0
C07p33470 Brassica napus HOM05D000533 ORTHO05D001069 3.6e-14 80.9 48 75.0
C09p40300 Brassica napus HOM05D000533 ORTHO05D001069 3.6e-14 80.9 48 75.0
BolC5t34051H Brassica oleracea HOM05D000533 ORTHO05D001069 3.6e-14 80.9 48 75.0
BolSC29t60510H Brassica oleracea HOM05D000533 ORTHO05D001069 3.6e-14 80.9 48 75.0
BolSC35t60688H Brassica oleracea HOM05D000533 ORTHO05D001069 3.6e-14 80.9 48 75.0
BolSC35t60708H Brassica oleracea HOM05D000533 ORTHO05D001069 3.6e-14 80.9 48 75.0
BolSC37t60797H Brassica oleracea HOM05D000533 ORTHO05D001069 3.6e-14 80.9 48 75.0
BraSC138t45531Z Brassica rapa HOM05D000533 ORTHO05D001069 3.6e-14 80.9 48 75.0
BraSC143t45656Z Brassica rapa HOM05D000533 ORTHO05D001069 3.6e-14 80.9 48 75.0
BraSC25t45914Z Brassica rapa HOM05D000533 ORTHO05D001069 3.6e-14 80.9 48 75.0
BraSC59t46554Z Brassica rapa HOM05D000533 ORTHO05D001069 3.6e-14 80.9 48 75.0
Lsat_1_v5_gn_6_87021 Lactuca sativa HOM05D000533 ORTHO05D001069 3.6e-14 80.9 49 71.4
Nitab4.5_0006502g0030 Nicotiana tabacum HOM05D000533 ORTHO05D001069 3.6e-14 80.9 48 72.9
CAN.G378.10 Capsicum annuum HOM05D000533 ORTHO05D001069 4.6e-14 80.5 49 71.4
RcHm_v2.0_Chr3g0470811 Rosa chinensis HOM05D000533 ORTHO05D001069 4.6e-14 80.5 49 69.4
Atru.chr5.1326 Acer truncatum HOM05D000533 ORTHO05D001069 6.1e-14 80.1 49 71.4
BolC7t43858H Brassica oleracea HOM05D000533 ORTHO05D001069 6.1e-14 80.1 49 73.5
Atru.chr2.908 Acer truncatum HOM05D000533 ORTHO05D001069 7.9e-14 79.7 49 71.4
SEGI_05748 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 1.0e-13 79.3 49 69.4
SEGI_26516 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.0e-13 79.3 49 69.4
CAN.G1045.9 Capsicum annuum HOM05D000533 ORTHO05D001069 1.8e-13 78.6 43 79.1
CAN.G1470.8 Capsicum annuum HOM05D000533 ORTHO05D001069 1.8e-13 78.6 43 79.1
Gohir.A04G053078 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.8e-13 78.6 49 73.5
Gohir.D08G207450 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.8e-13 78.6 49 73.5
Hund28343 Selenicereus undatus HOM05D000533 ORTHO05D001069 1.8e-13 78.6 49 71.4
Hund29094 Selenicereus undatus HOM05D000533 ORTHO05D001069 1.8e-13 78.6 49 71.4
Hund30658 Selenicereus undatus HOM05D000533 ORTHO05D001069 1.8e-13 78.6 49 71.4
Hund30925 Selenicereus undatus HOM05D000533 ORTHO05D001069 1.8e-13 78.6 49 71.4
DCAR_005908 Daucus carota HOM05D000533 ORTHO05D001069 2.3e-13 78.2 43 76.7
SEGI_26586 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 3.0e-13 77.8 49 71.4
Medtr4g117480 Medicago truncatula HOM05D000533 ORTHO05D001069 5.1e-13 77.0 43 76.7
Potri.013G074650 Populus trichocarpa HOM05D000533 ORTHO05D001069 6.7e-13 76.6 49 69.4
unitig_91.g26523 Utricularia gibba HOM05D000533 ORTHO05D001069 8.8e-13 76.3 43 74.4
FvH4_6g41620 Fragaria vesca HOM05D000533 ORTHO05D001069 1.1e-12 75.9 43 72.1
Psat0s1920g0160 Pisum sativum HOM05D000533 ORTHO05D001069 1.5e-12 75.5 43 74.4
ClCG11G009630 Citrullus lanatus HOM05D000533 ORTHO05D001069 1.9e-12 75.1 43 72.1
MELO3C027054.2 Cucumis melo HOM05D000533 ORTHO05D001069 1.9e-12 75.1 43 72.1
Phvul.004G015300 Phaseolus vulgaris HOM05D000533 ORTHO05D001069 1.9e-12 75.1 49 67.3
Oeu015129.1 Olea europaea HOM05D000533 ORTHO05D001069 3.3e-12 74.3 49 65.3
Glyma.18G155701 Glycine max HOM05D000533 ORTHO05D001069 9.7e-12 72.8 49 67.3
Gohir.D09G085250 Gossypium hirsutum HOM05D000533 ORTHO05D001069 3.7e-11 70.9 49 65.3
HanXRQChr11g0321231 Helianthus annuus HOM05D000533 ORTHO05D001069 3.7e-11 70.9 40 75.0
Solyc01g017740.2 Solanum lycopersicum HOM05D000580 ORTHO05D001785 6.3e-11 70.1 42 71.4
Eucgr.F01268 Eucalyptus grandis HOM05D000533 ORTHO05D001069 8.2e-11 69.7 49 67.3
Psat7g199400 Pisum sativum HOM05D000533 ORTHO05D001069 8.2e-11 69.7 39 74.4
ClCG07G012690 Citrullus lanatus HOM05D000533 ORTHO05D001069 1.1e-10 69.3 41 70.7
Nitab4.5_0007400g0140 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.1e-10 69.3 49 65.3
Psat0s2709g0120 Pisum sativum HOM05D000533 ORTHO05D001069 1.1e-10 69.3 40 75.0
CSS0030738 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D001069 1.4e-10 68.9 40 72.5
vmacro22393 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 2.4e-10 68.2 38 76.3
vmacro22419 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 2.4e-10 68.2 38 76.3
Gorai.006G101200 Gossypium raimondii HOM05D000533 ORTHO05D001069 5.3e-10 67.0 49 65.3
Gorai.004G123700 Gossypium raimondii HOM05D000533 ORTHO05D001069 1.5e-09 65.5 49 65.3
SMO086G0065 Selaginella moellendorffii HOM05D000533 ORTHO05D001069 2.6e-09 64.7 48 58.3
Nitab4.5_0000729g0120 Nicotiana tabacum HOM05D000533 ORTHO05D001069 4.5e-09 63.9 53 54.7
Eucgr.I00925 Eucalyptus grandis HOM05D000533 ORTHO05D001069 5.9e-09 63.5 41 65.9
Lsat_1_v5_gn_5_66001 Lactuca sativa HOM05D000533 ORTHO05D001069 1.3e-08 62.4 46 58.7
TPR.G20526 Trifolium pratense HOM05D000533 ORTHO05D001069 1.3e-08 62.4 41 58.5
AUR62043262 Chenopodium quinoa HOM05D000533 ORTHO05D001069 2.2e-08 61.6 49 55.1
AL9U11960 Arabidopsis lyrata HOM05D000533 ORTHO05D001069 3.8e-08 60.8 54 55.6
Gohir.A01G140323 Gossypium hirsutum HOM05D000533 ORTHO05D001069 3.8e-08 60.8 40 67.5
Gohir.D11G334151 Gossypium hirsutum HOM05D000533 ORTHO05D001069 3.8e-08 60.8 40 67.5
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 5.0e-08 60.5 49 59.2
arahy.Tifrunner.gnm1.ann1.EMA6B0 Arachis hypogaea HOM05D000533 ORTHO05D001069 6.5e-08 60.1 49 55.1
SEGI_36880 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.9e-07 58.5 47 53.2
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 3.2e-07 57.8 40 60.0
SabraPtG0005900 Salix brachista HOM05D000533 ORTHO05D001069 3.2e-07 57.8 40 60.0
Haze_26686 Corylus avellana HOM05D000533 ORTHO05D001069 1.2e-06 55.8 49 49.0
Lalb_Chr25g0284051 Lupinus albus HOM05D000533 ORTHO05D001069 1.6e-06 55.5 32 71.9
AUR62028573 Chenopodium quinoa HOM05D000533 ORTHO05D001069 2.1e-06 55.1 44 54.5
Actinidia30480 Actinidia chinensis HOM05D000533 ORTHO05D001069 3.6e-06 54.3 28 78.6
Cfa022526 Carpinus fangiana HOM05D000533 ORTHO05D001069 3.6e-06 54.3 47 51.1
SalBow1G1175 Salvia bowleyana HOM05D000533 ORTHO05D001069 3.6e-06 54.3 34 64.7
Aa31LG5G21740 Aethionema arabicum HOM05D000533 ORTHO05D001069 6.1e-06 53.5 48 62.5
ClCG10G006000 Citrullus lanatus HOM05D000533 ORTHO05D001069 7.9e-06 53.1 49 51.0
Haze_27200 Corylus avellana HOM05D000533 ORTHO05D001069 7.9e-06 53.1 47 44.7


User provided reference genes

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