Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 3.8e-51 204.5 102 100.0
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 3.3e-39 164.9 97 83.5
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 5.9e-36 154.1 97 81.4
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 3.8e-35 151.4 97 80.4
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 3.8e-35 151.4 97 80.4
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 7.2e-34 147.1 97 76.3
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 4.4e-31 137.9 97 73.2
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 1.1e-26 123.2 97 64.9
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 1.5e-26 122.9 98 66.3
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 3.3e-26 121.7 97 64.9
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 5.5e-26 120.9 103 62.1
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 9.5e-26 120.2 93 68.8
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 1.2e-25 119.8 98 68.4
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 1.6e-25 119.4 96 65.6
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 1.6e-25 119.4 97 64.9
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 2.8e-25 118.6 95 68.4
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 3.6e-25 118.2 73 79.5
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 4.7e-25 117.9 81 74.1
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 8.0e-25 117.1 96 63.5
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 1.0e-24 116.7 97 61.9
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 1.0e-24 116.7 93 66.7
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 1.0e-24 116.7 97 70.1
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 1.0e-24 116.7 104 62.5
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 1.4e-24 116.3 84 71.4
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 2.3e-24 115.5 98 65.3
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 3.0e-24 115.2 64 84.4
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 3.0e-24 115.2 64 84.4
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 4.0e-24 114.8 95 65.3
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 4.0e-24 114.8 64 82.8
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 4.0e-24 114.8 108 56.5
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 5.2e-24 114.4 64 84.4
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 6.8e-24 114.0 64 82.8
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 6.8e-24 114.0 97 63.9
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 6.8e-24 114.0 97 61.9
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 8.9e-24 113.6 68 79.4
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 8.9e-24 113.6 84 69.0
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 8.9e-24 113.6 99 63.6
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 8.9e-24 113.6 64 81.2
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 1.2e-23 113.2 99 64.6
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 1.5e-23 112.8 91 62.6
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 2.0e-23 112.5 64 81.2
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 2.0e-23 112.5 64 81.2
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 2.0e-23 112.5 64 81.2
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 2.0e-23 112.5 64 81.2
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 2.0e-23 112.5 64 82.8
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 2.0e-23 112.5 64 81.2
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.6e-23 112.1 64 79.7
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 2.6e-23 112.1 98 65.3
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 2.6e-23 112.1 83 71.1
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 3.4e-23 111.7 64 81.2
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 3.4e-23 111.7 64 81.2
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 4.4e-23 111.3 64 81.2
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 4.4e-23 111.3 72 75.0
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 4.4e-23 111.3 93 67.7
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 4.4e-23 111.3 64 81.2
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 4.4e-23 111.3 64 81.2
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 5.7e-23 110.9 80 68.8
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 5.7e-23 110.9 64 79.7
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 7.5e-23 110.5 80 71.2
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 9.8e-23 110.2 80 70.0
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 9.8e-23 110.2 84 67.9
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 9.8e-23 110.2 68 75.0
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 9.8e-23 110.2 64 79.7
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 9.8e-23 110.2 97 59.8
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 1.3e-22 109.8 64 79.7
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.3e-22 109.8 64 79.7
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.3e-22 109.8 64 79.7
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 1.7e-22 109.4 84 67.9
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 1.7e-22 109.4 90 64.4
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 2.2e-22 109.0 100 60.0
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 2.2e-22 109.0 68 75.0
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 2.2e-22 109.0 64 79.7
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 2.2e-22 109.0 99 60.6
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 2.2e-22 109.0 63 79.4
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 2.2e-22 109.0 64 79.7
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 2.8e-22 108.6 64 78.1
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 2.8e-22 108.6 98 64.3
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 2.8e-22 108.6 64 79.7
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 2.8e-22 108.6 92 63.0
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 3.7e-22 108.2 68 76.5
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 3.7e-22 108.2 64 79.7
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 3.7e-22 108.2 64 79.7
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 4.9e-22 107.8 100 59.0
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 4.9e-22 107.8 63 79.4
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 4.9e-22 107.8 63 79.4
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 6.3e-22 107.5 64 79.7
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 6.3e-22 107.5 82 69.5
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 8.3e-22 107.1 100 61.0
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 8.3e-22 107.1 97 61.9
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 8.3e-22 107.1 63 81.0
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 1.1e-21 106.7 100 59.0
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 1.1e-21 106.7 100 59.0
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 1.1e-21 106.7 83 66.3
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 1.4e-21 106.3 68 73.5
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 1.4e-21 106.3 64 76.6
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.8e-21 105.9 65 80.0
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 1.8e-21 105.9 64 78.1
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 2.4e-21 105.5 63 79.4
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 2.4e-21 105.5 65 76.9
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 2.4e-21 105.5 68 75.0
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.4e-21 105.5 68 75.0
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.4e-21 105.5 68 75.0
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 3.1e-21 105.1 102 60.8
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 4.1e-21 104.8 100 57.0
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 5.4e-21 104.4 63 79.4
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 5.4e-21 104.4 78 67.9
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 5.4e-21 104.4 120 50.8
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 7.0e-21 104.0 62 79.0
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 9.2e-21 103.6 63 74.6
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 9.2e-21 103.6 97 59.8
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 1.2e-20 103.2 68 72.1
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.2e-20 103.2 70 72.9
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 1.2e-20 103.2 64 75.0
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.6e-20 102.8 59 79.7
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 1.6e-20 102.8 103 58.3
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 3.5e-20 101.7 63 71.4
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 4.5e-20 101.3 71 71.8
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.3e-19 99.8 57 80.7
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 1.7e-19 99.4 68 70.6
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 1.7e-19 99.4 97 54.6
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 5.0e-19 97.8 105 58.1
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 6.6e-19 97.4 81 60.5
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 1.5e-18 96.3 78 66.7
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 3.3e-18 95.1 56 78.6
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 9.5e-18 93.6 66 65.2
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 6.1e-17 90.9 65 66.2
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.0e-16 90.1 66 65.2
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.4e-16 89.7 83 59.0
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 1.3e-14 83.2 97 52.6
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.7e-14 82.8 91 51.6
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.7e-14 82.8 91 51.6
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 2.9e-14 82.0 151 39.7
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 6.4e-14 80.9 64 62.5
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 6.4e-14 80.9 47 80.9
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 6.4e-14 80.9 97 49.5
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 8.3e-14 80.5 62 61.3
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 3.2e-13 78.6 64 62.5
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.6e-12 76.3 48 72.9
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.6e-12 76.3 47 74.5
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.7e-12 75.5 46 73.9
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 3.5e-12 75.1 95 46.3
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 7.8e-12 73.9 47 72.3
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 6.6e-11 70.9 64 54.7
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 1.1e-10 70.1 62 51.6
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.1e-10 70.1 68 54.4
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.1e-10 70.1 68 54.4
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.1e-10 70.1 68 54.4
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 5.6e-10 67.8 46 67.4
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 1.6e-09 66.2 63 52.4
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 2.1e-09 65.9 48 66.7
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 3.6e-09 65.1 99 47.5
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 6.2e-09 64.3 37 78.4
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 6.2e-09 64.3 39 79.5
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 3.4e-07 58.5 70 48.6
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 9.8e-07 57.0 39 74.4
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 1.7e-06 56.2 63 44.4


User provided reference genes

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