Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 0.0e+00 1620.9 894 100.0
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 0.0e+00 1393.3 897 86.8
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 0.0e+00 1365.5 896 85.8
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 0.0e+00 1359.4 915 84.6
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 0.0e+00 1316.6 899 81.2
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 0.0e+00 1170.2 816 80.3
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 0.0e+00 1129.4 899 71.7
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 4.3e-300 1034.6 902 62.9
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 8.5e-296 1020.4 899 65.1
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 9.7e-292 1006.9 900 63.9
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 1.3e-291 1006.5 915 62.4
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 7.7e-289 997.3 918 62.0
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 3.7e-283 978.4 924 61.0
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 1.7e-280 969.5 905 61.3
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 8.0e-278 960.7 607 84.8
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 1.4e-274 949.9 909 61.8
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 2.4e-274 949.1 925 60.3
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.6e-273 946.4 899 60.7
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.3e-272 943.3 917 59.5
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 8.8e-269 930.6 902 58.8
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 8.8e-269 930.6 905 58.7
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 2.4e-266 922.5 901 59.7
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 3.1e-266 922.2 878 61.6
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 8.5e-264 914.1 916 57.5
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 5.2e-261 904.8 913 57.1
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 2.6e-260 902.5 922 58.1
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 9.8e-260 900.6 878 59.0
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 1.8e-258 896.3 905 56.8
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 5.4e-258 894.8 913 56.0
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 7.7e-257 891.0 867 59.4
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 3.6e-254 882.1 914 56.5
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 1.8e-253 879.8 908 57.0
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 4.0e-253 878.6 879 57.9
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 9.8e-252 874.0 872 58.0
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.6e-249 866.7 902 58.6
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 5.9e-249 864.8 902 58.6
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 3.0e-248 862.4 904 57.6
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 5.0e-248 861.7 917 54.5
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 1.5e-247 860.1 899 55.6
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.5e-247 860.1 902 57.1
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 7.3e-247 857.8 894 55.7
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 4.7e-246 855.1 889 55.3
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 3.1e-245 852.4 822 59.1
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 2.6e-244 849.4 862 57.9
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 3.4e-244 849.0 900 55.6
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 7.5e-244 847.8 903 56.0
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 1.7e-243 846.7 905 57.0
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 1.1e-242 844.0 731 64.6
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 2.4e-242 842.8 855 55.8
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 2.7e-241 839.3 899 54.8
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 6.6e-240 834.7 872 57.6
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 8.6e-240 834.3 925 55.1
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 2.5e-239 832.8 856 57.1
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 7.3e-239 831.2 896 57.0
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 1.2e-238 830.5 922 54.9
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 2.8e-238 829.3 882 55.6
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 6.2e-238 828.2 897 57.6
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.1e-237 827.4 921 53.4
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 2.3e-237 826.2 903 53.9
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 2.0e-236 823.2 904 56.5
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 3.4e-236 822.4 897 54.8
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 1.3e-235 820.5 874 56.1
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 7.1e-234 814.7 873 56.4
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 1.2e-233 813.9 916 53.8
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 4.6e-233 812.0 871 54.8
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 6.0e-233 811.6 899 54.4
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 7.8e-233 811.2 880 55.3
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 6.6e-232 808.1 861 56.2
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 1.1e-231 807.4 763 60.9
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 3.3e-231 805.8 898 53.3
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 8.9e-229 797.7 892 52.5
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 1.5e-228 797.0 902 55.2
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 9.9e-228 794.3 817 59.2
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.7e-227 793.5 900 52.4
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 2.2e-227 793.1 909 55.0
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 1.4e-226 790.4 815 57.5
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 4.1e-226 788.9 901 54.7
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 9.2e-226 787.7 868 53.6
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.2e-225 787.3 894 52.3
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 2.3e-224 783.1 901 52.8
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 6.6e-224 781.6 875 55.4
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 6.6e-224 781.6 853 54.3
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 9.6e-223 777.7 845 55.5
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 1.6e-222 776.9 859 54.9
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 1.4e-221 773.9 856 54.1
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 6.9e-221 771.5 904 53.7
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 4.9e-219 765.4 857 53.2
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 1.2e-217 760.8 904 50.8
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 7.8e-217 758.1 871 52.7
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 1.3e-216 757.3 903 49.9
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 3.6e-214 749.2 901 51.5
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 5.3e-213 745.3 901 52.5
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 2.0e-212 743.4 863 52.5
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 7.6e-212 741.5 915 50.1
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 1.7e-211 740.3 870 51.3
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 4.2e-210 735.7 900 51.1
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 7.1e-210 734.9 913 50.8
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 9.3e-210 734.6 898 51.1
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 1.3e-208 730.7 925 50.4
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 3.3e-207 726.1 902 48.6
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 4.3e-207 725.7 911 51.2
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 4.5e-204 715.7 886 49.0
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 1.3e-203 714.1 896 49.2
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 9.6e-199 698.0 850 51.9
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 1.2e-196 691.0 926 48.1
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 4.5e-196 689.1 864 48.1
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 5.5e-194 682.2 897 47.5
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 6.0e-193 678.7 899 47.2
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 1.8e-189 667.2 748 53.5
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 3.6e-185 652.9 894 47.1
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 3.3e-183 646.4 857 48.8
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 5.3e-181 639.0 564 65.1
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 1.3e-174 617.8 899 45.6
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 4.2e-170 602.8 905 44.5
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 9.4e-170 601.7 660 55.0
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 5.7e-167 592.4 867 45.8
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 5.9e-164 582.4 623 55.4
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 9.1e-149 531.9 1055 39.9
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 3.2e-133 480.3 824 40.0
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 3.9e-131 473.4 405 64.7
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 7.5e-127 459.1 908 39.3
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 6.0e-124 449.5 753 42.0
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 6.0e-124 449.5 433 55.9
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 2.3e-123 447.6 1050 35.6
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 2.8e-113 414.1 453 54.5
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 5.1e-107 393.3 948 36.7
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 5.6e-106 389.8 1017 35.8
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 1.1e-96 359.0 472 48.1
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 1.2e-95 355.5 343 56.9
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 7.6e-95 352.8 896 32.4
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 7.6e-95 352.8 896 32.4
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.2e-94 351.3 248 72.6
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.4e-93 348.6 278 65.5
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 6.0e-92 343.2 341 53.4
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 8.2e-81 306.2 976 29.5
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 1.3e-70 272.3 740 32.0
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 8.5e-70 269.6 245 58.0
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 2.5e-69 268.1 161 89.4
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 9.7e-66 256.1 401 43.1
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 9.7e-66 256.1 454 40.1
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 1.4e-64 252.3 402 42.8
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 5.3e-64 250.4 422 42.2
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 1.5e-63 248.8 205 63.9
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 2.1e-60 238.4 414 41.5
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 2.3e-59 235.0 363 43.0
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 3.9e-59 234.2 321 45.5
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 5.7e-58 230.3 403 41.7
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 4.8e-57 227.3 845 28.2
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 6.5e-54 216.9 131 84.7
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 1.8e-51 208.8 362 40.1
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 7.0e-48 196.8 315 43.8
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 7.7e-47 193.4 319 43.3
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 2.1e-44 185.3 292 42.8
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 6.1e-44 183.7 177 62.1
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.4e-43 182.6 172 60.5
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.6e-39 169.1 255 42.7
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 5.0e-38 164.1 189 52.4
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 4.2e-37 161.0 685 28.5
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 8.0e-36 156.8 168 54.8
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.4e-35 156.0 237 41.8
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 3.0e-35 154.8 308 38.3
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 6.8e-35 153.7 307 37.8
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 6.8e-35 153.7 226 42.9
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 9.1e-32 143.3 969 24.8
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 4.5e-31 141.0 191 50.8
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 1.1e-29 136.3 299 36.5
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.1e-29 136.3 128 60.9
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 9.5e-29 133.3 283 36.7
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 9.5e-29 133.3 82 87.8
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.1e-24 119.8 122 62.3
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 9.5e-21 106.7 816 24.1
CAN.G443.2 Capsicum annuum HOM05D000880 ORTHO05D004760 3.1e-19 101.7 150 45.3
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 4.4e-18 97.8 292 33.2
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 5.8e-18 97.4 91 62.6
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 6.4e-17 94.0 233 31.8
CAN.G1155.3 Capsicum annuum HOM05D000198 ORTHO05D004760 6.2e-12 77.4 115 49.6
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 4.4e-10 71.2 180 33.3
MBI19_g43566_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D244402 2.3e-06 58.9 93 40.9


User provided reference genes

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