Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1238.26 Capsicum annuum HOM05D000888 ORTHO05D000740 3.2e-86 321.6 151 100.0
Solyc08g006220.4 Solanum lycopersicum HOM05D000888 ORTHO05D000740 6.0e-45 184.5 121 73.6
Sopen08g002190 Solanum pennellii HOM05D000888 ORTHO05D000740 3.9e-44 181.8 117 74.4
CAN.G137.57 Capsicum annuum HOM05D000888 ORTHO05D000740 2.1e-37 159.5 121 62.0
CAN.G757.4 Capsicum annuum HOM05D000888 ORTHO05D000740 2.8e-34 149.1 136 55.9
Sopen08g002210 Solanum pennellii HOM05D000888 ORTHO05D000740 3.7e-34 148.7 109 66.1
Solyc08g006210.3 Solanum lycopersicum HOM05D000888 ORTHO05D000740 6.3e-34 147.9 122 56.6
Sopen08g002180 Solanum pennellii HOM05D000888 ORTHO05D000740 2.4e-33 146.0 122 55.7
CAN.G757.8 Capsicum annuum HOM05D000888 ORTHO05D000740 7.7e-32 141.0 68 91.2
Sopen08g002240 Solanum pennellii HOM05D000888 ORTHO05D000740 1.9e-30 136.3 107 57.0
PGSC0003DMG400043722 Solanum tuberosum HOM05D000888 ORTHO05D000740 3.6e-29 132.1 101 60.4
Peaxi162Scf00045g01642 Petunia axillaris HOM05D000888 ORTHO05D000740 7.9e-29 131.0 118 55.1
Nitab4.5_0006661g0040 Nicotiana tabacum HOM05D000888 ORTHO05D000740 1.5e-27 126.7 140 49.3
CAN.G137.56 Capsicum annuum HOM05D000888 ORTHO05D000740 3.7e-26 122.1 117 53.8
Solyc08g006200.3 Solanum lycopersicum HOM05D000888 ORTHO05D000740 1.1e-25 120.6 120 50.0
CAN.G546.36 Capsicum annuum HOM05D000888 ORTHO05D000740 1.4e-25 120.2 137 47.4
Sopen08g002160 Solanum pennellii HOM05D000888 ORTHO05D000740 1.8e-25 119.8 122 48.4
CAN.G241.37 Capsicum annuum HOM05D000888 ORTHO05D000740 2.4e-25 119.4 107 53.3
Nitab4.5_0010282g0020 Nicotiana tabacum HOM05D000888 ORTHO05D000740 3.1e-25 119.0 128 50.0
Solyc08g006190.3 Solanum lycopersicum HOM05D000888 ORTHO05D000740 2.6e-24 115.9 107 51.4
CAN.G1342.8 Capsicum annuum HOM05D000888 ORTHO05D000740 3.4e-24 115.5 95 58.9
CAN.G1941.1 Capsicum annuum HOM05D000888 ORTHO05D000740 3.4e-24 115.5 104 53.8
CAN.G220.18 Capsicum annuum HOM05D000886 ORTHO05D000525 7.7e-24 114.4 105 58.1
PGSC0003DMG400026314 Solanum tuberosum HOM05D000888 ORTHO05D000740 1.0e-23 114.0 127 48.0
Nitab4.5_0000025g0010 Nicotiana tabacum HOM05D000888 ORTHO05D000740 2.2e-23 112.8 119 51.3
CAN.G673.4 Capsicum annuum HOM05D000888 ORTHO05D000740 2.9e-23 112.5 119 49.6
CAN.G137.44 Capsicum annuum HOM05D000888 ORTHO05D000740 3.8e-23 112.1 104 51.0
Peaxi162Scf00326g00321 Petunia axillaris HOM05D000888 ORTHO05D000740 3.8e-23 112.1 108 50.9
Nitab4.5_0012696g0020 Nicotiana tabacum HOM05D000888 ORTHO05D000740 6.5e-23 111.3 122 49.2
PGSC0003DMG401009541 Solanum tuberosum HOM05D000888 ORTHO05D000740 1.2e-21 107.1 106 50.9
Sopen08g002450 Solanum pennellii HOM05D000301 ORTHO05D000303 1.0e-20 104.0 110 50.9
CAN.G220.23 Capsicum annuum HOM05D000888 ORTHO05D000740 1.4e-20 103.6 112 48.2
Sopen08g002170 Solanum pennellii HOM05D000888 ORTHO05D000740 8.8e-20 100.9 106 49.1
Cc07_g12890 Coffea canephora HOM05D000888 ORTHO05D000740 1.7e-18 96.7 132 40.9
Dinv01509 Davidia involucrata HOM05D000888 ORTHO05D000740 3.7e-18 95.5 122 41.0
CAN.G220.19 Capsicum annuum HOM05D000886 ORTHO05D000525 4.8e-18 95.1 76 63.2
Dinv00373 Davidia involucrata HOM05D000888 ORTHO05D000740 8.2e-18 94.4 122 40.2
CAN.G241.36 Capsicum annuum HOM05D000888 ORTHO05D000740 2.0e-16 89.7 110 45.5
Cc05_g09350 Coffea canephora HOM05D000888 ORTHO05D000740 2.0e-16 89.7 102 45.1
Nitab4.5_0000555g0010 Nicotiana tabacum HOM05D000888 ORTHO05D000740 5.9e-16 88.2 98 48.0
Cc08_g08270 Coffea canephora HOM05D000888 ORTHO05D000740 2.2e-15 86.3 117 41.0
CAN.G220.17 Capsicum annuum HOM05D000888 ORTHO05D000740 8.5e-15 84.3 121 43.8
Lsat_1_v5_gn_1_43600 Lactuca sativa HOM05D000888 ORTHO05D000740 2.5e-14 82.8 95 43.2
Actinidia06436 Actinidia chinensis HOM05D000888 ORTHO05D000740 9.4e-14 80.9 103 40.8
Peaxi162Scf00045g01638 Petunia axillaris HOM05D000888 ORTHO05D000740 2.1e-13 79.7 56 60.7
Peaxi162Scf00346g00002 Petunia axillaris HOM05D000888 ORTHO05D000740 2.1e-13 79.7 60 56.7
Peaxi162Scf00045g01644 Petunia axillaris HOM05D000180 ORTHO05D000740 6.1e-13 78.2 124 39.5
Lsat_1_v5_gn_1_43540 Lactuca sativa HOM05D000888 ORTHO05D000740 8.0e-13 77.8 98 39.8
Peaxi162Scf01723g00002 Petunia axillaris HOM05D000888 ORTHO05D000740 1.4e-12 77.0 60 55.0
Peaxi162Scf00205g00721 Petunia axillaris HOM05D000888 ORTHO05D000740 8.8e-12 74.3 107 37.4
Carub.0004s0418 Capsella rubella HOM05D000888 ORTHO05D000740 2.0e-11 73.2 104 35.6
Nitab4.5_0008877g0020 Nicotiana tabacum HOM05D000888 ORTHO05D000740 4.4e-11 72.0 96 39.6
Lsat_1_v5_gn_1_43960 Lactuca sativa HOM05D000888 ORTHO05D000740 7.5e-11 71.2 93 41.9
Peaxi162Scf01636g00008 Petunia axillaris HOM05D000888 ORTHO05D000740 7.5e-11 71.2 62 48.4
CAN.G241.28 Capsicum annuum HOM05D000888 ORTHO05D000740 1.7e-10 70.1 101 34.7
Thhalv10000130m.g Eutrema salsugineum HOM05D000888 ORTHO05D000740 1.7e-10 70.1 123 34.1
CAN.G757.1 Capsicum annuum HOM05D000888 ORTHO05D000740 3.7e-10 68.9 106 33.0
Cc08_g06160 Coffea canephora HOM05D000888 ORTHO05D000740 3.7e-10 68.9 96 35.4
Sc07g0007340 Simmondsia chinensis HOM05D000888 ORTHO05D000740 3.7e-10 68.9 106 38.7
Sopen08g002220 Solanum pennellii HOM05D000888 ORTHO05D000740 3.7e-10 68.9 90 41.1
PGSC0003DMG400013589 Solanum tuberosum HOM05D000888 ORTHO05D000740 3.7e-10 68.9 107 34.6
Solyc08g006240.3 Solanum lycopersicum HOM05D000888 ORTHO05D000740 4.8e-10 68.6 105 38.1
CAN.G137.58 Capsicum annuum HOM05D000888 ORTHO05D000740 6.3e-10 68.2 123 35.8
Lsat_1_v5_gn_5_32880 Lactuca sativa HOM05D000888 ORTHO05D000740 6.3e-10 68.2 105 34.3
Nitab4.5_0000555g0080 Nicotiana tabacum HOM05D000888 ORTHO05D000740 6.3e-10 68.2 105 36.2
CAN.G346.7 Capsicum annuum HOM05D000888 ORTHO05D000740 1.1e-09 67.4 85 44.7
ECA248G2946 Erigeron canadensis HOM05D000888 ORTHO05D000740 1.8e-09 66.6 103 38.8
Cc07_g12880 Coffea canephora HOM05D000888 ORTHO05D000740 2.4e-09 66.2 108 32.4
Lsat_1_v5_gn_3_109740 Lactuca sativa HOM05D009439 ORTHO05D010404 2.4e-09 66.2 92 42.4
Manes.03G005400 Manihot esculenta HOM05D000888 ORTHO05D000740 2.4e-09 66.2 99 35.4
Peaxi162Scf00192g01414 Petunia axillaris HOM05D000888 ORTHO05D000740 3.1e-09 65.9 96 34.4
BraA09t41009Z Brassica rapa HOM05D000888 ORTHO05D000740 4.1e-09 65.5 113 33.6
Cc05_g09340 Coffea canephora HOM05D000888 ORTHO05D000740 4.1e-09 65.5 101 38.6
Nitab4.5_0007342g0030 Nicotiana tabacum HOM05D000888 ORTHO05D000740 5.3e-09 65.1 96 33.3
TWI63G1187 Tripterygium wilfordii HOM05D000888 ORTHO05D000740 5.3e-09 65.1 104 35.6
CSS0028692 Camellia sinensis var. sinensis HOM05D000888 ORTHO05D000740 7.0e-09 64.7 78 42.3
Thhalv10000111m.g Eutrema salsugineum HOM05D000888 ORTHO05D000740 1.6e-08 63.5 125 28.0
AT2G24700 Arabidopsis thaliana HOM05D000888 ORTHO05D000740 2.0e-08 63.2 93 32.3
A09p56140 Brassica napus HOM05D000888 ORTHO05D000740 2.0e-08 63.2 96 35.4
C08p39100 Brassica napus HOM05D000888 ORTHO05D000740 2.0e-08 63.2 119 31.9
BolC8t51482H Brassica oleracea HOM05D000888 ORTHO05D000740 2.0e-08 63.2 119 31.9
CARHR117140 Cardamine hirsuta HOM05D000888 ORTHO05D000740 2.0e-08 63.2 120 33.3
Thhalv10028050m.g Eutrema salsugineum HOM05D000888 ORTHO05D000740 2.7e-08 62.8 101 30.7
BcaB04g18618 Brassica carinata HOM05D000888 ORTHO05D000740 3.5e-08 62.4 101 31.7
PGSC0003DMG402009541 Solanum tuberosum HOM05D000888 ORTHO05D000740 4.5e-08 62.0 90 37.8
HanXRQChr01g0014891 Helianthus annuus HOM05D000888 ORTHO05D000740 5.9e-08 61.6 93 38.7
Solyc08g006270.1 Solanum lycopersicum HOM05D000888 ORTHO05D000740 5.9e-08 61.6 116 31.0
AUR62026865 Chenopodium quinoa HOM05D000888 ORTHO05D000740 7.7e-08 61.2 112 32.1
PGSC0003DMG400009538 Solanum tuberosum HOM05D000888 ORTHO05D000740 7.7e-08 61.2 91 31.9
AL4G15420 Arabidopsis lyrata HOM05D000888 ORTHO05D000740 1.0e-07 60.8 117 31.6
C04p54350 Brassica napus HOM05D000888 ORTHO05D000740 1.0e-07 60.8 118 29.7
BcaB06g27992 Brassica carinata HOM05D000430 ORTHO05D000305 1.7e-07 60.1 117 29.9
BolC4t26980H Brassica oleracea HOM05D000888 ORTHO05D000740 1.7e-07 60.1 117 29.9
Carub.0003s1035 Capsella rubella HOM05D000888 ORTHO05D000740 1.7e-07 60.1 103 34.0
Solyc08g006483.1 Solanum lycopersicum HOM05D000888 ORTHO05D000740 1.7e-07 60.1 90 35.6
Aa31sc142G80 Aethionema arabicum HOM05D000888 ORTHO05D000740 2.2e-07 59.7 99 33.3
CAN.G1238.29 Capsicum annuum HOM05D000888 ORTHO05D000740 2.2e-07 59.7 90 34.4
Nitab4.5_0008877g0040 Nicotiana tabacum HOM05D000888 ORTHO05D000740 2.2e-07 59.7 122 32.8
Aa31LG5G24100 Aethionema arabicum HOM05D000888 ORTHO05D000740 2.9e-07 59.3 90 34.4
Sopen08g002250 Solanum pennellii HOM05D000888 ORTHO05D000740 2.9e-07 59.3 105 31.4
BcaC05g29396 Brassica carinata HOM05D000888 ORTHO05D000740 3.8e-07 58.9 106 30.2
C03p20850 Brassica napus HOM05D000888 ORTHO05D000740 3.8e-07 58.9 108 31.5
Nitab4.5_0000025g0040 Nicotiana tabacum HOM05D000888 ORTHO05D000740 3.8e-07 58.9 94 35.1
BcaC01g01071 Brassica carinata HOM05D000305 ORTHO05D000740 5.0e-07 58.5 101 32.7
Carub.0007s0895 Capsella rubella HOM05D000888 ORTHO05D000740 5.0e-07 58.5 100 31.0
Peaxi162Scf00045g01537 Petunia axillaris HOM05D000888 ORTHO05D000740 5.0e-07 58.5 118 33.9
Sp4g03680 Schrenkiella parvula HOM05D000888 ORTHO05D000740 5.0e-07 58.5 90 33.3
CSS0024635 Camellia sinensis var. sinensis HOM05D009784 ORTHO05D010235 6.5e-07 58.2 91 35.2
Nitab4.5_0008877g0010 Nicotiana tabacum HOM05D000888 ORTHO05D000740 6.5e-07 58.2 93 35.5
Nitab4.5_0008877g0030 Nicotiana tabacum HOM05D000888 ORTHO05D000740 6.5e-07 58.2 111 28.8
Nitab4.5_0010282g0010 Nicotiana tabacum HOM05D000888 ORTHO05D000740 6.5e-07 58.2 82 39.0
Sp4g03720 Schrenkiella parvula HOM05D000888 ORTHO05D000740 6.5e-07 58.2 91 35.2
Aa31sc15G210 Aethionema arabicum HOM05D000888 ORTHO05D000740 8.5e-07 57.8 93 30.1
Dinv26758 Davidia involucrata HOM05D000823 ORTHO05D000088 8.5e-07 57.8 84 29.8
Thhalv10000515m.g Eutrema salsugineum HOM05D000888 ORTHO05D000740 8.5e-07 57.8 94 31.9
Manes.13G130800 Manihot esculenta HOM05D000823 ORTHO05D000088 8.5e-07 57.8 90 36.7
Sp4g03630 Schrenkiella parvula HOM05D000888 ORTHO05D000740 8.5e-07 57.8 85 35.3
Thecc.09G009500 Theobroma cacao HOM05D000888 ORTHO05D000740 8.5e-07 57.8 101 35.6
Aa31sc42G80 Aethionema arabicum HOM05D000888 ORTHO05D000740 1.1e-06 57.4 90 31.1
AL7G43620 Arabidopsis lyrata HOM05D000888 ORTHO05D000740 1.5e-06 57.0 101 33.7
A04p19040 Brassica napus HOM05D000888 ORTHO05D000740 1.5e-06 57.0 93 32.3
C04p54320 Brassica napus HOM05D000888 ORTHO05D000740 1.5e-06 57.0 93 32.3
BraA04t17501Z Brassica rapa HOM05D000888 ORTHO05D000740 1.5e-06 57.0 93 32.3
BcaC05g29398 Brassica carinata HOM05D000888 ORTHO05D000740 1.9e-06 56.6 101 29.7
BcaNung07344 Brassica carinata HOM05D000888 ORTHO05D000740 1.9e-06 56.6 100 30.0
C04p54310 Brassica napus HOM05D000888 ORTHO05D000740 1.9e-06 56.6 79 34.2
C05p57010 Brassica napus HOM05D000888 ORTHO05D000740 1.9e-06 56.6 101 29.7
BolC4t26976H Brassica oleracea HOM05D000888 ORTHO05D000740 1.9e-06 56.6 79 34.2
Thhalv10000028m.g Eutrema salsugineum HOM05D000888 ORTHO05D000740 1.9e-06 56.6 106 30.2
Nitab4.5_0000555g0110 Nicotiana tabacum HOM05D000888 ORTHO05D000740 1.9e-06 56.6 93 31.2
A05p38210 Brassica napus HOM05D000888 ORTHO05D000740 2.5e-06 56.2 123 30.1
Hund12417 Selenicereus undatus HOM05D000888 ORTHO05D000740 2.5e-06 56.2 96 30.2
A03p36860 Brassica napus HOM05D000888 ORTHO05D000740 3.2e-06 55.8 105 27.6
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 3.2e-06 55.8 101 31.7
BraA03t12849Z Brassica rapa HOM05D000888 ORTHO05D000740 3.2e-06 55.8 105 27.6
CARHR085640 Cardamine hirsuta HOM05D000888 ORTHO05D000740 3.2e-06 55.8 95 32.6
HanXRQChr01g0030501 Helianthus annuus HOM05D000888 ORTHO05D000740 3.2e-06 55.8 85 40.0
Aa31sc15G110 Aethionema arabicum HOM05D000888 ORTHO05D000740 4.2e-06 55.5 104 28.8
Nitab4.5_0000555g0030 Nicotiana tabacum HOM05D000888 ORTHO05D000740 4.2e-06 55.5 91 35.2
AL3G22600 Arabidopsis lyrata HOM05D001505 ORTHO05D000740 5.5e-06 55.1 102 32.4
BraA05t22613Z Brassica rapa HOM05D000888 ORTHO05D000740 5.5e-06 55.1 123 29.3
BraA08t33812Z Brassica rapa HOM05D000888 ORTHO05D000740 5.5e-06 55.1 101 31.7
Aa31LG9G5580 Aethionema arabicum HOM05D000888 ORTHO05D000740 7.2e-06 54.7 104 27.9
BcaB06g27990 Brassica carinata HOM05D000888 ORTHO05D000740 7.2e-06 54.7 95 30.5
BcaC09g51947 Brassica carinata HOM05D000888 ORTHO05D000740 7.2e-06 54.7 102 31.4
A03p17770 Brassica napus HOM05D000888 ORTHO05D000740 7.2e-06 54.7 92 32.6
C01p07310 Brassica napus HOM05D000888 ORTHO05D000740 7.2e-06 54.7 102 31.4
C01p07350 Brassica napus HOM05D000888 ORTHO05D000740 7.2e-06 54.7 102 31.4
BolC1t00720H Brassica oleracea HOM05D000888 ORTHO05D000740 7.2e-06 54.7 86 32.6
BolC5t34364H Brassica oleracea HOM05D000888 ORTHO05D000740 7.2e-06 54.7 94 30.9
BraA03t11041Z Brassica rapa HOM05D000888 ORTHO05D000740 7.2e-06 54.7 92 32.6
PGR083G1938 Punica granatum HOM05D000823 ORTHO05D000088 7.2e-06 54.7 106 31.1
Aa31sc15G160 Aethionema arabicum HOM05D000888 ORTHO05D000740 9.4e-06 54.3 95 31.6
AT2G24645 Arabidopsis thaliana HOM05D000888 ORTHO05D000740 9.4e-06 54.3 72 34.7
AT4G00260 Arabidopsis thaliana HOM05D000888 ORTHO05D000740 9.4e-06 54.3 81 30.9
BcaB01g02993 Brassica carinata HOM05D000888 ORTHO05D011624 9.4e-06 54.3 94 30.9
A04p19010 Brassica napus HOM05D000888 ORTHO05D000740 9.4e-06 54.3 77 36.4
Carub.0004s0415 Capsella rubella HOM05D000888 ORTHO05D000740 9.4e-06 54.3 103 26.2
MBI16_g47024_MAGBIO Magnolia biondii HOM05D000395 ORTHO05D000088 9.4e-06 54.3 87 33.3


User provided reference genes

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