Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1237.44 Capsicum annuum HOM05D003997 ORTHO05D002698 8.9e-116 420.6 267 100.0
Sopen04g008760 Solanum pennellii HOM05D003997 ORTHO05D002698 3.1e-84 315.8 318 59.1
Solyc04g017680.3 Solanum lycopersicum HOM05D003997 ORTHO05D002698 4.0e-84 315.5 318 59.4
Nitab4.5_0000082g0420 Nicotiana tabacum HOM05D003997 ORTHO05D002698 5.8e-75 285.0 320 53.1
Nitab4.5_0014391g0010 Nicotiana tabacum HOM05D003997 ORTHO05D002698 2.1e-72 276.6 318 52.8
Nitab4.5_0021549g0010 Nicotiana tabacum HOM05D003997 ORTHO05D002698 1.0e-71 274.2 320 52.5
Dinv25067 Davidia involucrata HOM05D003997 ORTHO05D002698 9.3e-65 251.1 321 49.5
MSTRG.10419 Avicennia marina HOM05D003997 ORTHO05D002698 1.3e-63 247.3 323 48.9
Nitab4.5_0009392g0020 Nicotiana tabacum HOM05D003997 ORTHO05D002698 1.8e-63 246.9 305 49.5
SGA_v2.0_scaffold392G50675 Striga asiatica HOM05D003997 ORTHO05D002698 2.8e-61 239.6 320 47.5
Cc06_g06830 Coffea canephora HOM05D003997 ORTHO05D002698 2.4e-60 236.5 321 47.0
Thecc.05G108200 Theobroma cacao HOM05D003997 ORTHO05D002698 4.0e-60 235.7 322 46.9
DCAR_013448 Daucus carota HOM05D003997 ORTHO05D002698 7.6e-59 231.5 322 46.3
Hma1.2p1_2082F.1_g313570 Hydrangea macrophylla HOM05D003997 ORTHO05D002698 2.2e-58 229.9 321 47.0
Nn2g14387 Nelumbo nucifera HOM05D003997 ORTHO05D002698 2.2e-58 229.9 322 46.3
Migut.L01852 Erythranthe guttata HOM05D003997 ORTHO05D002698 1.1e-57 227.6 320 46.2
Migut.O00931 Erythranthe guttata HOM05D003997 ORTHO05D002698 1.1e-57 227.6 320 45.9
Prupe.7G091500 Prunus persica HOM05D003997 ORTHO05D002698 1.9e-57 226.9 322 47.2
GSVIVG01022501001 Vitis vinifera HOM05D003997 ORTHO05D002698 3.2e-57 226.1 320 45.9
MD14G1042400 Malus domestica HOM05D003997 ORTHO05D002698 5.5e-57 225.3 319 46.4
Actinidia37765 Actinidia chinensis HOM05D003997 ORTHO05D002698 7.1e-57 224.9 321 46.4
Cfa020087 Carpinus fangiana HOM05D003997 ORTHO05D002698 7.1e-57 224.9 323 45.2
TAR623G1175 Trochodendron aralioides HOM05D003997 ORTHO05D002698 1.6e-56 223.8 322 45.3
CSS0008111 Camellia sinensis var. sinensis HOM05D003997 ORTHO05D002698 2.1e-56 223.4 321 46.7
CiPaw.08G072600 Carya illinoinensis HOM05D003997 ORTHO05D002698 2.1e-56 223.4 324 46.3
CSS0023244 Camellia sinensis var. sinensis HOM05D003997 ORTHO05D002698 4.6e-56 222.2 321 46.7
CiPaw.15G185300 Carya illinoinensis HOM05D003997 ORTHO05D002698 6.0e-56 221.9 323 45.5
TWI53G0181 Tripterygium wilfordii HOM05D003997 ORTHO05D002698 6.0e-56 221.9 323 46.4
COL.COLO4_29520 Corchorus olitorius HOM05D003997 ORTHO05D002698 1.0e-55 221.1 326 44.8
Rhsim03G0061700 Rhododendron simsii HOM05D003997 ORTHO05D002698 1.0e-55 221.1 320 46.2
unitig_8.g3554 Utricularia gibba HOM05D003997 ORTHO05D002698 1.8e-55 220.3 319 44.8
Atru.chr8.1304 Acer truncatum HOM05D003997 ORTHO05D002698 3.0e-55 219.5 321 45.2
Cpa.g.sc17.105 Carica papaya HOM05D003997 ORTHO05D002698 3.9e-55 219.2 322 45.3
Duzib128G1254 Durio zibethinus HOM05D003997 ORTHO05D002698 5.7e-54 215.3 322 45.0
RcHm_v2.0_Chr3g0476631 Rosa chinensis HOM05D003997 ORTHO05D002698 5.7e-54 215.3 321 45.2
THA.LOC109116862 Tarenaya hassleriana HOM05D003997 ORTHO05D002698 5.7e-54 215.3 319 45.1
Gorai.002G234000 Gossypium raimondii HOM05D003997 ORTHO05D002698 7.4e-54 214.9 322 44.4
CANSAT35G1644 Cannabis sativa HOM05D003997 ORTHO05D002698 9.6e-54 214.5 325 44.0
PSO732G0769 Papaver somniferum HOM05D003997 ORTHO05D002698 1.3e-53 214.2 323 44.9
TWI74G0953 Tripterygium wilfordii HOM05D003997 ORTHO05D002698 2.1e-53 213.4 323 44.6
FvH4_6g20730 Fragaria vesca HOM05D003997 ORTHO05D002698 4.8e-53 212.2 321 45.2
PSO675G1782 Papaver somniferum HOM05D003997 ORTHO05D002698 4.8e-53 212.2 323 44.6
vmacro07504 Vaccinium macrocarpon HOM05D003997 ORTHO05D002698 4.8e-53 212.2 320 45.9
FAN14G5955 Fragaria x ananassa HOM05D003997 ORTHO05D002698 6.3e-53 211.8 321 45.2
Oeu020171.1 Olea europaea HOM05D003997 ORTHO05D002698 6.3e-53 211.8 320 43.8
Sabra16G0068400 Salix brachista HOM05D003997 ORTHO05D002698 6.3e-53 211.8 325 44.0
FAN02G0475 Fragaria x ananassa HOM05D003997 ORTHO05D002698 8.2e-53 211.5 321 45.2
Gohir.D01G190300 Gossypium hirsutum HOM05D003997 ORTHO05D002698 8.2e-53 211.5 322 44.1
Manes.08G035900 Manihot esculenta HOM05D003997 ORTHO05D002698 8.2e-53 211.5 324 44.1
QL03p055008 Quercus lobata HOM05D003997 ORTHO05D002698 8.2e-53 211.5 323 44.6
Aa31LG11G1160 Aethionema arabicum HOM05D003997 ORTHO05D002698 1.1e-52 211.1 318 44.7
Gohir.A01G200200 Gossypium hirsutum HOM05D003997 ORTHO05D002698 1.1e-52 211.1 324 44.8
FAN05G3201 Fragaria x ananassa HOM05D003997 ORTHO05D002698 2.4e-52 209.9 321 44.9
QL07p027111 Quercus lobata HOM05D003997 ORTHO05D002698 4.1e-52 209.1 325 44.3
Potri.016G067100 Populus trichocarpa HOM05D003997 ORTHO05D002698 5.3e-52 208.8 325 43.7
Ciclev10013709m.g Citrus clementina HOM05D003997 ORTHO05D002698 2.0e-51 206.8 318 43.7
Peaxi162Scf00002g03712 Petunia axillaris HOM05D003997 ORTHO05D002698 2.6e-51 206.5 199 61.3
RcHm_v2.0_Chr7g0223381 Rosa chinensis HOM05D003997 ORTHO05D002698 3.4e-51 206.1 318 44.0
Gohir.A09G132800 Gossypium hirsutum HOM05D003997 ORTHO05D002698 4.5e-51 205.7 324 43.2
BraA02t09164Z Brassica rapa HOM05D003997 ORTHO05D002698 5.9e-51 205.3 318 43.7
ECA234G3695 Erigeron canadensis HOM05D003997 ORTHO05D002698 7.6e-51 204.9 319 43.9
HanXRQChr17g0562561 Helianthus annuus HOM05D003997 ORTHO05D002698 1.0e-50 204.5 319 45.1
Sed0019356 Sechium edule HOM05D003997 ORTHO05D002698 1.7e-50 203.8 321 44.2
A02p42340 Brassica napus HOM05D003997 ORTHO05D002698 2.9e-50 203.0 318 43.4
Lsat_1_v5_gn_4_40160 Lactuca sativa HOM05D003997 ORTHO05D002698 2.9e-50 203.0 319 42.9
Aqoxy4G00923 Aquilegia oxysepala HOM05D003997 ORTHO05D002698 3.8e-50 202.6 320 44.1
SalBow5G1795 Salvia bowleyana HOM05D003997 ORTHO05D002698 3.8e-50 202.6 320 41.9
Sp2g25660 Schrenkiella parvula HOM05D003997 ORTHO05D002698 3.8e-50 202.6 319 44.2
C02p62220 Brassica napus HOM05D003997 ORTHO05D002698 5.0e-50 202.2 318 44.0
CsaV3_1G014590 Cucumis sativus L. HOM05D003997 ORTHO05D002698 6.5e-50 201.8 322 41.9
MELO3C004760.2 Cucumis melo HOM05D003997 ORTHO05D002698 8.4e-50 201.4 322 42.2
Aqoxy1G01867 Aquilegia oxysepala HOM05D003997 ORTHO05D002698 1.1e-49 201.1 320 44.1
BcaB07g29840 Brassica carinata HOM05D003997 ORTHO05D002698 1.1e-49 201.1 319 43.9
Eucgr.H00426 Eucalyptus grandis HOM05D003997 ORTHO05D002698 2.5e-49 199.9 323 43.0
Lj3A736G17 Lonicera japonica HOM05D003997 ORTHO05D002698 3.2e-49 199.5 305 45.2
Thhalv10003962m.g Eutrema salsugineum HOM05D001982 ORTHO05D003938 4.2e-49 199.1 318 43.4
BcaC03g18154 Brassica carinata HOM05D003997 ORTHO05D002698 1.2e-48 197.6 199 57.3
BcaC03g18159 Brassica carinata HOM05D003997 ORTHO05D002698 1.2e-48 197.6 199 57.3
Ah.15g098860 Amaranthus hybridus HOM05D003997 ORTHO05D002698 2.7e-48 196.4 199 57.8
BolC2t12279H Brassica oleracea HOM05D003997 ORTHO05D002698 3.5e-48 196.1 318 42.1
ClCG01G012560 Citrullus lanatus HOM05D003997 ORTHO05D002698 7.9e-48 194.9 199 58.3
BraA06t25868Z Brassica rapa HOM05D003997 ORTHO05D002698 1.3e-47 194.1 322 42.5
AUR62015091 Chenopodium quinoa HOM05D003997 ORTHO05D002698 1.3e-47 194.1 199 56.8
AUR62017549 Chenopodium quinoa HOM05D003997 ORTHO05D002698 1.3e-47 194.1 199 56.8
EL10Ac7g16269 Beta vulgaris HOM05D003997 ORTHO05D002698 3.9e-47 192.6 199 57.3
SHI07013 Sapria himalayana HOM05D003997 ORTHO05D002698 3.9e-47 192.6 198 57.6
BcaB02g09651 Brassica carinata HOM05D003997 ORTHO05D002698 5.1e-47 192.2 199 55.8
BcaC01g02477 Brassica carinata HOM05D003997 ORTHO05D002698 5.1e-47 192.2 199 55.8
C03p64380 Brassica napus HOM05D003997 ORTHO05D002698 5.1e-47 192.2 199 55.8
MBI19_g30302_MAGBIO Magnolia biondii HOM05D003997 ORTHO05D002698 5.1e-47 192.2 210 56.7
BolC3t18692H Brassica oleracea HOM05D003997 ORTHO05D002698 1.1e-46 191.0 199 55.3
Carub.0007s1240 Capsella rubella HOM05D003997 ORTHO05D002698 1.1e-46 191.0 318 42.1
RhsimUnG0113000 Rhododendron simsii HOM05D003997 ORTHO05D002698 1.5e-46 190.7 199 57.8
AL1G60620 Arabidopsis lyrata HOM05D003997 ORTHO05D002698 5.7e-46 188.7 318 41.2
AT4G28360 Arabidopsis thaliana HOM05D003997 ORTHO05D002698 5.7e-46 188.7 318 41.2
ATR0730G052 Amborella trichopoda HOM05D003997 ORTHO05D002698 7.4e-46 188.3 198 56.6
Sc06g0010610 Simmondsia chinensis HOM05D003997 ORTHO05D002698 9.7e-46 188.0 199 56.3
Hund20962 Selenicereus undatus HOM05D003997 ORTHO05D002698 2.8e-45 186.4 199 56.3
HPP92_017694 Vanilla planifolia HOM05D003997 ORTHO05D002698 2.8e-45 186.4 321 39.9
Phvul.008G070600 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 4.8e-45 185.7 199 54.3
Carub.0001s4137 Capsella rubella HOM05D003997 ORTHO05D002698 1.4e-44 184.1 318 41.2
PGSC0003DMG400034098 Solanum tuberosum HOM05D003997 ORTHO05D002698 2.4e-44 183.3 197 57.9
VMungo1383G3620 Vigna mungo HOM05D003997 ORTHO05D002698 2.4e-44 183.3 199 53.8
Os01g0616500 Oryza sativa ssp. japonica HOM05D003997 ORTHO05D002698 3.1e-44 183.0 198 54.0
AT1G52370 Arabidopsis thaliana HOM05D003997 ORTHO05D002698 5.3e-44 182.2 314 42.0
Haze_20104 Corylus avellana HOM05D003997 ORTHO05D002698 9.0e-44 181.4 267 43.1
Lj2g0021502 Lotus japonicus HOM05D003997 ORTHO05D002698 4.5e-43 179.1 199 54.3
Psat6g101760 Pisum sativum HOM05D003997 ORTHO05D002698 5.9e-43 178.7 199 53.8
TPR.G30221 Trifolium pratense HOM05D003997 ORTHO05D002698 7.7e-43 178.3 199 53.3
Medtr1g040020 Medicago truncatula HOM05D003997 ORTHO05D002698 1.7e-42 177.2 199 54.3
Zm00001eb095190 Zea mays HOM05D003997 ORTHO05D002698 2.2e-42 176.8 198 53.0
Ca_12342_v3 Cicer arietinum L. HOM05D003997 ORTHO05D002698 5.0e-42 175.6 199 52.3
Lalb_Chr05g0221411 Lupinus albus HOM05D003997 ORTHO05D002698 1.9e-41 173.7 199 51.8
Phvul.008G070900 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 1.9e-41 173.7 202 52.0
Glyma.18G227500 Glycine max HOM05D003997 ORTHO05D002698 3.2e-41 172.9 199 52.3
CARHR236070 Cardamine hirsuta HOM05D003997 ORTHO05D002698 4.2e-41 172.6 318 39.6
SEGI_26891 Sequoiadendron giganteum HOM05D003997 ORTHO05D002698 7.2e-41 171.8 196 53.1
Lalb_Chr16g0386841 Lupinus albus HOM05D003997 ORTHO05D002698 1.2e-40 171.0 199 51.3
Glyma.09G264400 Glycine max HOM05D003997 ORTHO05D002698 6.1e-40 168.7 199 51.8
CDE02G4432 Ceratophyllum demersum HOM05D003997 ORTHO05D002698 1.5e-38 164.1 184 54.9
arahy.Tifrunner.gnm1.ann1.2ECS7R Arachis hypogaea HOM05D003997 ORTHO05D002698 3.7e-37 159.5 199 48.2
arahy.Tifrunner.gnm1.ann1.7B1PRD Arachis hypogaea HOM05D003997 ORTHO05D002698 3.7e-37 159.5 199 48.2
arahy.Tifrunner.gnm1.ann1.RN4U32 Arachis hypogaea HOM05D003997 ORTHO05D002698 3.7e-37 159.5 199 48.2
arahy.Tifrunner.gnm1.ann1.RXW997 Arachis hypogaea HOM05D003997 ORTHO05D002698 3.7e-37 159.5 199 48.2
arahy.Tifrunner.gnm1.ann1.W16VAI Arachis hypogaea HOM05D003997 ORTHO05D002698 3.7e-37 159.5 199 48.2
arahy.Tifrunner.gnm1.ann1.ZAYD4R Arachis hypogaea HOM05D003997 ORTHO05D002698 3.7e-37 159.5 199 48.2
arahy.Tifrunner.gnm1.ann1.4LVT1K Arachis hypogaea HOM05D003997 ORTHO05D002698 6.3e-37 158.7 199 48.2
arahy.Tifrunner.gnm1.ann1.4C6UH4 Arachis hypogaea HOM05D003997 ORTHO05D002698 8.2e-37 158.3 199 47.7
MD12G1043300 Malus domestica HOM05D003997 ORTHO05D002698 1.7e-34 150.6 138 60.1
PGR142G0313 Punica granatum HOM05D003997 ORTHO05D002698 6.5e-34 148.7 280 39.3
Solyc03g044440.2 Solanum lycopersicum HOM05D003997 ORTHO05D002698 1.1e-33 147.9 197 51.8
Rhsim03G0061200 Rhododendron simsii HOM05D003997 ORTHO05D002698 1.4e-33 147.5 175 53.1
Nitab4.5_0007356g0020 Nicotiana tabacum HOM05D003997 ORTHO05D002698 6.1e-32 142.1 182 51.1
RhsimUnG0113200 Rhododendron simsii HOM05D003997 ORTHO05D002698 2.3e-31 140.2 139 56.8
Rhsim03G0061600 Rhododendron simsii HOM05D003997 ORTHO05D002698 3.0e-31 139.8 138 58.0
RhsimUnG0112900 Rhododendron simsii HOM05D003997 ORTHO05D002698 3.0e-31 139.8 138 57.2
AagrBONN_evm.TU.Sc2ySwM_228.3244 Anthoceros agrestis HOM05D003997 ORTHO05D002698 9.7e-30 134.8 197 42.6
Gorai.006G147800 Gossypium raimondii HOM05D003997 ORTHO05D002698 1.3e-29 134.4 172 49.4
CARHR060900 Cardamine hirsuta HOM05D003997 ORTHO05D002698 2.8e-29 133.3 312 34.9
Sopen03g008580 Solanum pennellii HOM05D003997 ORTHO05D002698 8.2e-29 131.7 232 42.7
MD06G1011100 Malus domestica HOM05D003997 ORTHO05D002698 2.4e-28 130.2 326 34.4
MD03G1130200 Malus domestica HOM05D003997 ORTHO05D002698 2.6e-27 126.7 306 34.3
Prupe.7G027600 Prunus persica HOM05D003997 ORTHO05D002698 1.0e-26 124.8 312 34.3
Phvul.008G071600 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 8.5e-26 121.7 200 41.0
Pp3c8_16210 Physcomitrium patens HOM05D003997 ORTHO05D002698 2.5e-25 120.2 198 39.9
MD12G1043400 Malus domestica HOM05D003997 ORTHO05D002698 9.4e-25 118.2 203 41.4
RcHm_v2.0_Chr4g0386011 Rosa chinensis HOM05D003997 ORTHO05D002698 2.7e-24 116.7 292 35.6
SMO228G0153 Selaginella moellendorffii HOM05D003997 ORTHO05D002698 1.4e-23 114.4 196 38.3
FvH4_4g00560 Fragaria vesca HOM05D003997 ORTHO05D002698 2.0e-22 110.5 272 36.8
FAN12G0168 Fragaria x ananassa HOM05D003997 ORTHO05D002698 4.4e-22 109.4 272 36.4
Mapoly0001s0445 Marchantia polymorpha HOM05D003997 ORTHO05D002698 1.4e-20 104.4 201 38.3
Psat6g152720 Pisum sativum HOM05D003997 ORTHO05D002698 1.8e-20 104.0 102 54.9
FAN12G3167 Fragaria x ananassa HOM05D003997 ORTHO05D002698 2.4e-20 103.6 188 41.5
Rhsim03G0060300 Rhododendron simsii HOM05D003997 ORTHO05D002698 1.9e-17 94.0 199 39.7
FAN12G2504 Fragaria x ananassa HOM05D003997 ORTHO05D002698 1.8e-15 87.4 175 40.0
FAN17G2484 Fragaria x ananassa HOM05D003997 ORTHO05D002698 1.8e-15 87.4 175 40.0
Phvul.010G107200 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 8.8e-15 85.1 83 57.8
FAN22G0547 Fragaria x ananassa HOM05D003997 ORTHO05D002698 4.4e-14 82.8 175 38.3
Rhsim03G0060600 Rhododendron simsii HOM05D003997 ORTHO05D002698 2.2e-13 80.5 172 39.5
Duzib093G0527 Durio zibethinus HOM05D003997 ORTHO05D002698 4.8e-13 79.3 203 33.5
BolSC101t60211H Brassica oleracea HOM05D003997 ORTHO05D002698 2.7e-08 63.5 92 43.5
CBR_g23715 Chara braunii HOM05D003997 ORTHO05D002698 8.8e-07 58.5 202 28.2
MCO07G289 Micromonas commoda HOM05D003997 ORTHO05D002698 1.5e-06 57.8 127 33.9


User provided reference genes

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