Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1231.34 Capsicum annuum HOM05D002471 ORTHO05D003712 3.6e-52 208.0 106 100.0
Solyc01g107880.3 Solanum lycopersicum HOM05D002471 ORTHO05D003712 3.4e-26 121.7 73 89.0
Sopen01g050050 Solanum pennellii HOM05D002471 ORTHO05D003712 3.4e-26 121.7 73 89.0
CAN.G1231.31 Capsicum annuum HOM05D002471 ORTHO05D003712 1.3e-25 119.8 73 86.3
Peaxi162Scf00016g00211 Petunia axillaris HOM05D002471 ORTHO05D003712 2.2e-25 119.0 73 86.3
Nitab4.5_0001220g0010 Nicotiana tabacum HOM05D002471 ORTHO05D003712 2.9e-25 118.6 73 87.7
Nitab4.5_0002740g0030 Nicotiana tabacum HOM05D002471 ORTHO05D003712 2.9e-25 118.6 73 87.7
PGSC0003DMG400025880 Solanum tuberosum HOM05D002471 ORTHO05D003712 3.7e-25 118.2 73 87.7
Dinv15736 Davidia involucrata HOM05D002471 ORTHO05D003712 1.9e-24 115.9 73 82.2
PGR142G0507 Punica granatum HOM05D002471 ORTHO05D003712 2.4e-24 115.5 73 83.6
CANSAT25G1275 Cannabis sativa HOM05D002471 ORTHO05D003712 4.1e-24 114.8 73 80.8
SalBow6G6213 Salvia bowleyana HOM05D002471 ORTHO05D003712 5.4e-24 114.4 73 82.2
COL.COLO4_32627 Corchorus olitorius HOM05D002471 ORTHO05D003712 9.2e-24 113.6 73 82.2
SGA_v2.0_scaffold90G27611 Striga asiatica HOM05D002471 ORTHO05D003712 9.2e-24 113.6 73 80.8
MD05G1085000 Malus domestica HOM05D002471 ORTHO05D003712 1.6e-23 112.8 73 80.8
QL11p034831 Quercus lobata HOM05D002471 ORTHO05D003712 1.6e-23 112.8 73 80.8
Duzib052G0365 Durio zibethinus HOM05D002471 ORTHO05D003712 2.0e-23 112.5 73 80.8
Eucgr.I01130 Eucalyptus grandis HOM05D002471 ORTHO05D003712 2.0e-23 112.5 73 79.5
Thecc.02G103800 Theobroma cacao HOM05D002471 ORTHO05D003712 2.0e-23 112.5 73 80.8
Gohir.A13G042500 Gossypium hirsutum HOM05D002471 ORTHO05D003712 3.5e-23 111.7 73 80.8
Gohir.D13G040900 Gossypium hirsutum HOM05D002471 ORTHO05D003712 3.5e-23 111.7 73 80.8
Gorai.013G045900 Gossypium raimondii HOM05D002471 ORTHO05D003712 3.5e-23 111.7 73 80.8
Potri.001G304100 Populus trichocarpa HOM05D002471 ORTHO05D003712 3.5e-23 111.7 73 79.5
Cpa.g.sc200.25 Carica papaya HOM05D002471 ORTHO05D003712 4.6e-23 111.3 73 79.5
Ciclev10027715m.g Citrus clementina HOM05D002471 ORTHO05D003712 4.6e-23 111.3 73 78.1
Manes.10G078500 Manihot esculenta HOM05D002471 ORTHO05D003712 4.6e-23 111.3 73 78.1
TWI75G1110 Tripterygium wilfordii HOM05D002471 ORTHO05D003712 4.6e-23 111.3 73 78.1
Cfa004547 Carpinus fangiana HOM05D002471 ORTHO05D003712 6.0e-23 110.9 73 79.5
Haze_10112 Corylus avellana HOM05D002471 ORTHO05D003712 6.0e-23 110.9 73 79.5
Haze_10115 Corylus avellana HOM05D002471 ORTHO05D003712 6.0e-23 110.9 73 79.5
Manes.07G072800 Manihot esculenta HOM05D002471 ORTHO05D003712 6.0e-23 110.9 73 78.1
Oeu010384.1 Olea europaea HOM05D002471 ORTHO05D003712 6.0e-23 110.9 73 79.5
TAR628G0580 Trochodendron aralioides HOM05D002471 ORTHO05D003712 6.0e-23 110.9 73 78.1
CSS0003761 Camellia sinensis var. sinensis HOM05D002471 ORTHO05D003712 7.8e-23 110.5 73 79.5
Cc02_g19010 Coffea canephora HOM05D002471 ORTHO05D003712 7.8e-23 110.5 73 76.7
Duzib248G1549 Durio zibethinus HOM05D002471 ORTHO05D003712 7.8e-23 110.5 73 79.5
Lj9C356G4 Lonicera japonica HOM05D002471 ORTHO05D003712 7.8e-23 110.5 73 78.1
Actinidia17877 Actinidia chinensis HOM05D002471 ORTHO05D003712 1.0e-22 110.2 73 78.1
MD00G1138200 Malus domestica HOM05D002471 ORTHO05D003712 1.0e-22 110.2 73 79.5
Prupe.8G129300 Prunus persica HOM05D002471 ORTHO05D003712 1.0e-22 110.2 73 79.5
Atru.chr5.2641 Acer truncatum HOM05D002471 ORTHO05D003712 1.3e-22 109.8 73 76.7
Atru.chr5.2647 Acer truncatum HOM05D002471 ORTHO05D003712 1.3e-22 109.8 73 76.7
Aqoxy5G01185 Aquilegia oxysepala HOM05D002471 ORTHO05D003712 1.3e-22 109.8 69 82.6
arahy.Tifrunner.gnm1.ann1.92SQ9J Arachis hypogaea HOM05D002471 ORTHO05D003712 1.3e-22 109.8 75 76.0
arahy.Tifrunner.gnm1.ann1.IV52NX Arachis hypogaea HOM05D002471 ORTHO05D003712 1.3e-22 109.8 75 76.0
Nn1g04785 Nelumbo nucifera HOM05D002471 ORTHO05D003712 1.3e-22 109.8 73 78.1
Potri.009G099400 Populus trichocarpa HOM05D002471 ORTHO05D003712 1.3e-22 109.8 73 78.1
Sabra16G0190800 Salix brachista HOM05D002471 ORTHO05D003712 1.3e-22 109.8 73 79.5
Hund00120 Selenicereus undatus HOM05D002471 ORTHO05D003712 1.3e-22 109.8 71 78.9
MSTRG.20171 Avicennia marina HOM05D002471 ORTHO05D003712 1.7e-22 109.4 73 79.5
Duzib132G0131 Durio zibethinus HOM05D002471 ORTHO05D003712 1.7e-22 109.4 73 79.5
Lalb_Chr05g0219311 Lupinus albus HOM05D002471 ORTHO05D003712 1.7e-22 109.4 75 76.0
Lalb_Chr16g0384861 Lupinus albus HOM05D002471 ORTHO05D003712 1.7e-22 109.4 75 76.0
Sabra09G0075700 Salix brachista HOM05D002471 ORTHO05D003712 1.7e-22 109.4 73 78.1
Dinv42172 Davidia involucrata HOM05D002471 ORTHO05D003712 2.3e-22 109.0 69 78.3
Migut.B00367 Erythranthe guttata HOM05D002471 ORTHO05D003712 2.3e-22 109.0 73 79.5
FvH4_2g05730 Fragaria vesca HOM05D002471 ORTHO05D003712 2.3e-22 109.0 73 78.1
FAN15G2265 Fragaria x ananassa HOM05D002471 ORTHO05D003712 2.3e-22 109.0 73 78.1
FAN20G0068 Fragaria x ananassa HOM05D002471 ORTHO05D003712 2.3e-22 109.0 73 78.1
FAN24G2894 Fragaria x ananassa HOM05D002471 ORTHO05D003712 2.3e-22 109.0 73 78.1
RcHm_v2.0_Chr6g0256621 Rosa chinensis HOM05D002471 ORTHO05D003712 2.3e-22 109.0 73 78.1
Aqoxy6G01258 Aquilegia oxysepala HOM05D002471 ORTHO05D003712 3.0e-22 108.6 71 80.3
AL7G17300 Arabidopsis lyrata HOM05D002471 ORTHO05D003712 3.0e-22 108.6 73 80.8
Carub.0007s0632 Capsella rubella HOM05D002471 ORTHO05D003712 3.0e-22 108.6 73 80.8
CARHR242210 Cardamine hirsuta HOM05D002471 ORTHO05D003712 3.0e-22 108.6 73 80.8
FAN27G3397 Fragaria x ananassa HOM05D002471 ORTHO05D003712 3.0e-22 108.6 73 78.1
Medtr4g085550 Medicago truncatula HOM05D002471 ORTHO05D003712 3.0e-22 108.6 73 78.1
Nitab4.5_0000292g0080 Nicotiana tabacum HOM05D002471 ORTHO05D003712 3.0e-22 108.6 72 80.6
Oeu048698.2 Olea europaea HOM05D002471 ORTHO05D003712 3.0e-22 108.6 73 78.1
ClCG02G006070 Citrullus lanatus HOM05D002471 ORTHO05D003712 3.9e-22 108.2 73 76.7
MELO3C018461.2 Cucumis melo HOM05D002471 ORTHO05D003712 3.9e-22 108.2 73 76.7
CsaV3_7G008470 Cucumis sativus L. HOM05D002471 ORTHO05D003712 3.9e-22 108.2 73 76.7
ECA236G4146 Erigeron canadensis HOM05D002471 ORTHO05D003712 3.9e-22 108.2 69 79.7
Sed0014443 Sechium edule HOM05D002471 ORTHO05D003712 5.0e-22 107.8 73 76.7
MSTRG.16728 Avicennia marina HOM05D002471 ORTHO05D003712 6.6e-22 107.5 73 76.7
Glyma.07G215200 Glycine max HOM05D002471 ORTHO05D003712 6.6e-22 107.5 75 76.0
CiPaw.05G008400 Carya illinoinensis HOM05D002471 ORTHO05D003712 8.6e-22 107.1 73 76.7
Glyma.02G103800 Glycine max HOM05D002471 ORTHO05D003712 8.6e-22 107.1 75 74.7
Lj4g0010035 Lotus japonicus HOM05D002471 ORTHO05D003712 8.6e-22 107.1 75 74.7
Nitab4.5_0001230g0030 Nicotiana tabacum HOM05D002471 ORTHO05D003712 8.6e-22 107.1 68 82.4
Phvul.003G047600 Phaseolus vulgaris HOM05D002471 ORTHO05D003712 8.6e-22 107.1 75 74.7
Psat7g126400 Pisum sativum HOM05D002471 ORTHO05D003712 8.6e-22 107.1 73 76.7
THA.LOC104807837 Tarenaya hassleriana HOM05D002471 ORTHO05D003712 8.6e-22 107.1 73 79.5
TPR.G12707 Trifolium pratense HOM05D002471 ORTHO05D003712 8.6e-22 107.1 75 74.7
TWI79G1465 Tripterygium wilfordii HOM05D002471 ORTHO05D003712 8.6e-22 107.1 73 78.1
VMungo0251G3159 Vigna mungo HOM05D002471 ORTHO05D003712 8.6e-22 107.1 75 74.7
CiPaw.06G171300 Carya illinoinensis HOM05D002471 ORTHO05D003712 1.1e-21 106.7 73 78.1
Lsat_1_v5_gn_0_4161 Lactuca sativa HOM05D002471 ORTHO05D003712 1.1e-21 106.7 69 82.6
Nn5g30358 Nelumbo nucifera HOM05D002471 ORTHO05D003712 1.5e-21 106.3 71 78.9
Oeu028240.1 Olea europaea HOM05D002471 ORTHO05D003712 1.5e-21 106.3 69 78.3
Rhsim11G0163900 Rhododendron simsii HOM05D002471 ORTHO05D003712 1.5e-21 106.3 73 75.3
Ca_18711_v3 Cicer arietinum L. HOM05D002471 ORTHO05D003712 1.9e-21 105.9 75 73.3
Hund06339 Selenicereus undatus HOM05D002471 ORTHO05D003712 1.9e-21 105.9 73 75.3
AUR62010254 Chenopodium quinoa HOM05D002471 ORTHO05D003712 2.5e-21 105.5 73 75.3
AUR62013236 Chenopodium quinoa HOM05D002471 ORTHO05D003712 2.5e-21 105.5 73 75.3
Thhalv10024280m.g Eutrema salsugineum HOM05D002471 ORTHO05D003712 2.5e-21 105.5 73 78.1
Lsat_1_v5_gn_5_115740 Lactuca sativa HOM05D002471 ORTHO05D003712 3.3e-21 105.1 69 75.4
TWI31G1427 Tripterygium wilfordii HOM05D002471 ORTHO05D003712 3.3e-21 105.1 73 75.3
EL10Ac9g22322 Beta vulgaris HOM05D002471 ORTHO05D003712 4.3e-21 104.8 73 74.0
GSVIVG01031710001 Vitis vinifera HOM05D002471 ORTHO05D003712 4.3e-21 104.8 70 77.1
Ah.01g017910 Amaranthus hybridus HOM05D002471 ORTHO05D003712 5.6e-21 104.4 73 75.3
Sed0022765 Sechium edule HOM05D002471 ORTHO05D003712 5.6e-21 104.4 73 74.0
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 7.3e-21 104.0 73 78.1
HanXRQChr16g0509961 Helianthus annuus HOM05D002471 ORTHO05D003712 7.3e-21 104.0 69 76.8
Sp7g31810 Schrenkiella parvula HOM05D002471 ORTHO05D003712 7.3e-21 104.0 71 78.9
DCAR_029075 Daucus carota HOM05D002471 ORTHO05D003712 9.5e-21 103.6 75 70.7
PSO170G0111 Papaver somniferum HOM05D002471 ORTHO05D003712 9.5e-21 103.6 71 73.2
PSO210G1934 Papaver somniferum HOM05D002471 ORTHO05D003712 9.5e-21 103.6 71 73.2
AT4G34100 Arabidopsis thaliana HOM05D002471 ORTHO05D003712 1.6e-20 102.8 73 76.7
BcaNung03790 Brassica carinata HOM05D002471 ORTHO05D003712 1.6e-20 102.8 71 77.5
BcaNung03791 Brassica carinata HOM05D002471 ORTHO05D003712 1.6e-20 102.8 71 77.5
A01p04350 Brassica napus HOM05D002471 ORTHO05D003712 1.6e-20 102.8 71 77.5
C01p04750 Brassica napus HOM05D002471 ORTHO05D003712 1.6e-20 102.8 71 77.5
BolC1t00459H Brassica oleracea HOM05D002471 ORTHO05D003712 1.6e-20 102.8 71 77.5
BraA01t00424Z Brassica rapa HOM05D002471 ORTHO05D003712 1.6e-20 102.8 71 77.5
HanXRQChr03g0070141 Helianthus annuus HOM05D002471 ORTHO05D003712 1.6e-20 102.8 69 73.9
vmacro02027 Vaccinium macrocarpon HOM05D002471 ORTHO05D003712 2.1e-20 102.4 73 72.6
DCAR_022010 Daucus carota HOM05D002471 ORTHO05D003712 3.6e-20 101.7 73 69.9
HanXRQChr09g0250641 Helianthus annuus HOM05D002471 ORTHO05D003712 4.7e-20 101.3 68 75.0
Actinidia12932 Actinidia chinensis HOM05D002471 ORTHO05D003712 6.2e-20 100.9 73 74.0
CDE02G1550 Ceratophyllum demersum HOM05D002471 ORTHO05D003712 6.2e-20 100.9 74 68.9
unitig_0.g96 Utricularia gibba HOM05D002471 ORTHO05D003712 6.2e-20 100.9 71 74.6
vmacro19516 Vaccinium macrocarpon HOM05D002471 ORTHO05D003712 1.4e-19 99.8 69 76.8
CSS0003725 Camellia sinensis var. sinensis HOM05D002471 ORTHO05D003712 1.8e-19 99.4 69 75.4
CDE04G3492 Ceratophyllum demersum HOM05D002471 ORTHO05D003712 2.3e-19 99.0 74 66.2
Gohir.D02G208600 Gossypium hirsutum HOM05D002471 ORTHO05D003712 2.3e-19 99.0 73 74.0
Gorai.005G236600 Gossypium raimondii HOM05D002471 ORTHO05D003712 2.3e-19 99.0 73 74.0
PSO675G4888 Papaver somniferum HOM05D002471 ORTHO05D003712 2.3e-19 99.0 73 74.0
Gohir.A03G187850 Gossypium hirsutum HOM05D002471 ORTHO05D003712 3.1e-19 98.6 73 72.6
Rhsim05G0086900 Rhododendron simsii HOM05D002471 ORTHO05D003712 3.1e-19 98.6 69 75.4
Sc14g0001820 Simmondsia chinensis HOM05D002471 ORTHO05D003712 3.1e-19 98.6 67 71.6
SHI05318 Sapria himalayana HOM05D002471 ORTHO05D003712 6.8e-19 97.4 73 72.6
PSO541G5863 Papaver somniferum HOM05D002471 ORTHO05D003712 1.2e-18 96.7 73 71.2
ECA234G3000 Erigeron canadensis HOM05D002471 ORTHO05D003712 1.5e-18 96.3 69 72.5
HPP92_000199 Vanilla planifolia HOM05D002471 ORTHO05D003712 2.0e-18 95.9 74 71.6
Ah.01g010650 Amaranthus hybridus HOM05D002471 ORTHO05D003712 3.4e-18 95.1 71 71.8
ATR0762G060 Amborella trichopoda HOM05D002471 ORTHO05D003712 7.5e-18 94.0 69 75.4
unitig_60.g25459 Utricularia gibba HOM05D002471 ORTHO05D003712 1.3e-17 93.2 94 59.6
Sc14g0001810 Simmondsia chinensis HOM05D002471 ORTHO05D003712 2.9e-17 92.0 67 68.7
SEGI_08024 Sequoiadendron giganteum HOM05D002471 ORTHO05D003712 8.3e-17 90.5 64 71.9
HanXRQChr16g0515001 Helianthus annuus HOM05D002471 ORTHO05D003712 5.4e-16 87.8 59 78.0
Zm00001eb275450 Zea mays HOM05D002471 ORTHO05D003712 7.8e-15 84.0 64 67.2
Os06g0639100 Oryza sativa ssp. japonica HOM05D002471 ORTHO05D003712 1.0e-14 83.6 64 67.2
Zm00001eb387290 Zea mays HOM05D002471 ORTHO05D003712 1.0e-14 83.6 64 67.2
AagrBONN_evm.TU.Sc2ySwM_228.2821 Anthoceros agrestis HOM05D002471 ORTHO05D003712 3.0e-14 82.0 63 68.3
Mapoly0082s0015 Marchantia polymorpha HOM05D002471 ORTHO05D003712 1.5e-13 79.7 66 62.1
SEGI_06740 Sequoiadendron giganteum HOM05D002471 ORTHO05D003712 2.5e-13 79.0 72 58.3
Pp3c15_7960 Physcomitrium patens HOM05D002471 ORTHO05D003712 5.6e-13 77.8 64 64.1
Pp3c15_8020 Physcomitrium patens HOM05D002471 ORTHO05D003712 5.6e-13 77.8 64 64.1
Pp3c9_10370 Physcomitrium patens HOM05D002471 ORTHO05D003712 2.1e-12 75.9 64 64.1
Pp3c9_10380 Physcomitrium patens HOM05D002471 ORTHO05D003712 2.1e-12 75.9 64 64.1
AL7G17290 Arabidopsis lyrata HOM05D002471 ORTHO05D003712 3.6e-12 75.1 73 58.9
BraA08t33676Z Brassica rapa HOM05D002471 ORTHO05D003712 9.9e-10 67.0 80 50.0
SMO347G0169 Selaginella moellendorffii HOM05D002471 ORTHO05D003712 1.3e-09 66.6 60 56.7
BcaC01g00933 Brassica carinata HOM05D002471 ORTHO05D003712 2.2e-09 65.9 80 50.0
BcaC01g00935 Brassica carinata HOM05D002471 ORTHO05D003712 2.2e-09 65.9 57 59.6
C03p86110 Brassica napus HOM05D002471 ORTHO05D003712 2.2e-09 65.9 80 50.0
C03p86130 Brassica napus HOM05D002471 ORTHO05D003712 2.2e-09 65.9 57 59.6
BolC3t20899H Brassica oleracea HOM05D002471 ORTHO05D003712 2.2e-09 65.9 80 50.0
BolC3t20901H Brassica oleracea HOM05D002471 ORTHO05D003712 2.2e-09 65.9 57 59.6
Thhalv10022448m.g Eutrema salsugineum HOM05D002471 ORTHO05D003712 8.4e-09 63.9 57 66.7
A08p17150 Brassica napus HOM05D002471 ORTHO05D003712 3.2e-08 62.0 80 48.8
BraA03t15330Z Brassica rapa HOM05D002471 ORTHO05D003712 1.2e-07 60.1 46 63.0
GSVIVG01022083001 Vitis vinifera HOM05D002471 ORTHO05D003712 7.8e-07 57.4 68 47.1
FvH4_2g04251 Fragaria vesca HOM05D002471 ORTHO05D003712 1.0e-06 57.0 42 73.8
BcaB03g11857 Brassica carinata HOM05D002471 ORTHO05D003712 2.3e-06 55.8 82 47.6
CBR_g17730 Chara braunii HOM05D002471 ORTHO05D003712 3.0e-06 55.5 65 47.7


User provided reference genes

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