Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1231.33 Capsicum annuum HOM05D002471 ORTHO05D003712 4.1e-79 298.1 164 100.0
CAN.G1231.31 Capsicum annuum HOM05D002471 ORTHO05D003712 3.8e-69 265.0 155 94.8
Sopen01g050050 Solanum pennellii HOM05D002471 ORTHO05D003712 1.9e-68 262.7 155 94.2
Solyc01g107880.3 Solanum lycopersicum HOM05D002471 ORTHO05D003712 4.2e-68 261.5 155 93.5
PGSC0003DMG400025880 Solanum tuberosum HOM05D002471 ORTHO05D003712 1.0e-66 256.9 155 92.9
Nitab4.5_0001220g0010 Nicotiana tabacum HOM05D002471 ORTHO05D003712 4.4e-65 251.5 155 91.0
Nitab4.5_0002740g0030 Nicotiana tabacum HOM05D002471 ORTHO05D003712 3.7e-64 248.4 155 90.3
Peaxi162Scf00016g00211 Petunia axillaris HOM05D002471 ORTHO05D003712 8.2e-64 247.3 155 89.7
SGA_v2.0_scaffold90G27611 Striga asiatica HOM05D002471 ORTHO05D003712 9.8e-57 223.8 155 78.7
Cc02_g19010 Coffea canephora HOM05D002471 ORTHO05D003712 7.0e-55 217.6 155 78.7
Potri.009G099400 Populus trichocarpa HOM05D002471 ORTHO05D003712 1.3e-53 213.4 155 75.5
Potri.001G304100 Populus trichocarpa HOM05D002471 ORTHO05D003712 1.7e-53 213.0 155 77.4
Rhsim11G0163900 Rhododendron simsii HOM05D002471 ORTHO05D003712 1.7e-53 213.0 155 77.4
CSS0003761 Camellia sinensis var. sinensis HOM05D002471 ORTHO05D003712 2.3e-53 212.6 155 77.4
Cfa004547 Carpinus fangiana HOM05D002471 ORTHO05D003712 3.8e-53 211.8 155 75.5
Lj9C356G4 Lonicera japonica HOM05D002471 ORTHO05D003712 2.5e-52 209.1 155 76.1
Sabra09G0075700 Salix brachista HOM05D002471 ORTHO05D003712 2.5e-52 209.1 155 75.5
Nitab4.5_0001230g0030 Nicotiana tabacum HOM05D002471 ORTHO05D003712 4.2e-52 208.4 155 78.1
Thecc.02G103800 Theobroma cacao HOM05D002471 ORTHO05D003712 4.2e-52 208.4 155 74.8
Atru.chr5.2641 Acer truncatum HOM05D002471 ORTHO05D003712 5.5e-52 208.0 155 72.9
Atru.chr5.2647 Acer truncatum HOM05D002471 ORTHO05D003712 5.5e-52 208.0 155 72.9
Migut.B00367 Erythranthe guttata HOM05D002471 ORTHO05D003712 5.5e-52 208.0 155 74.8
FvH4_2g05730 Fragaria vesca HOM05D002471 ORTHO05D003712 2.8e-51 205.7 155 73.5
Duzib052G0365 Durio zibethinus HOM05D002471 ORTHO05D003712 3.6e-51 205.3 155 73.5
FAN20G0068 Fragaria x ananassa HOM05D002471 ORTHO05D003712 3.6e-51 205.3 155 73.5
CiPaw.05G008400 Carya illinoinensis HOM05D002471 ORTHO05D003712 4.7e-51 204.9 155 72.3
FAN15G2265 Fragaria x ananassa HOM05D002471 ORTHO05D003712 4.7e-51 204.9 155 72.9
Nitab4.5_0000292g0080 Nicotiana tabacum HOM05D002471 ORTHO05D003712 6.1e-51 204.5 155 76.8
CiPaw.06G171300 Carya illinoinensis HOM05D002471 ORTHO05D003712 8.0e-51 204.1 155 72.9
Gohir.D02G208600 Gossypium hirsutum HOM05D002471 ORTHO05D003712 8.0e-51 204.1 155 73.5
Gorai.005G236600 Gossypium raimondii HOM05D002471 ORTHO05D003712 8.0e-51 204.1 155 73.5
COL.COLO4_32627 Corchorus olitorius HOM05D002471 ORTHO05D003712 1.0e-50 203.8 155 72.3
FAN24G2894 Fragaria x ananassa HOM05D002471 ORTHO05D003712 1.4e-50 203.4 155 72.9
MD05G1085000 Malus domestica HOM05D002471 ORTHO05D003712 1.4e-50 203.4 155 71.6
RcHm_v2.0_Chr6g0256621 Rosa chinensis HOM05D002471 ORTHO05D003712 1.4e-50 203.4 156 73.7
SalBow6G6213 Salvia bowleyana HOM05D002471 ORTHO05D003712 1.4e-50 203.4 155 72.9
QL11p034831 Quercus lobata HOM05D002471 ORTHO05D003712 1.8e-50 203.0 155 72.3
GSVIVG01031710001 Vitis vinifera HOM05D002471 ORTHO05D003712 1.8e-50 203.0 155 71.6
FAN27G3397 Fragaria x ananassa HOM05D002471 ORTHO05D003712 3.0e-50 202.2 155 72.3
CSS0003725 Camellia sinensis var. sinensis HOM05D002471 ORTHO05D003712 4.0e-50 201.8 155 75.5
Ciclev10027715m.g Citrus clementina HOM05D002471 ORTHO05D003712 4.0e-50 201.8 155 73.5
Oeu048698.2 Olea europaea HOM05D002471 ORTHO05D003712 4.0e-50 201.8 156 76.3
Duzib248G1549 Durio zibethinus HOM05D002471 ORTHO05D003712 5.2e-50 201.4 155 72.9
Gohir.A03G187800 Gossypium hirsutum HOM05D002471 ORTHO05D003712 5.2e-50 201.4 155 72.3
Gorai.013G045900 Gossypium raimondii HOM05D002471 ORTHO05D003712 1.2e-49 200.3 155 71.6
Sabra16G0190800 Salix brachista HOM05D002471 ORTHO05D003712 1.2e-49 200.3 155 72.9
arahy.Tifrunner.gnm1.ann1.92SQ9J Arachis hypogaea HOM05D002471 ORTHO05D003712 2.0e-49 199.5 155 71.6
Gohir.A13G042500 Gossypium hirsutum HOM05D002471 ORTHO05D003712 2.6e-49 199.1 155 71.0
Gohir.D13G040900 Gossypium hirsutum HOM05D002471 ORTHO05D003712 2.6e-49 199.1 155 71.0
Lj4g0010035 Lotus japonicus HOM05D002471 ORTHO05D003712 2.6e-49 199.1 155 72.3
Medtr4g085550 Medicago truncatula HOM05D002471 ORTHO05D003712 2.6e-49 199.1 155 71.0
CANSAT25G1275 Cannabis sativa HOM05D002471 ORTHO05D003712 9.8e-49 197.2 155 71.6
Duzib132G0131 Durio zibethinus HOM05D002471 ORTHO05D003712 2.2e-48 196.1 156 74.4
Prupe.8G129300 Prunus persica HOM05D002471 ORTHO05D003712 2.8e-48 195.7 155 68.4
TPR.G12707 Trifolium pratense HOM05D002471 ORTHO05D003712 3.7e-48 195.3 155 71.6
TWI31G1427 Tripterygium wilfordii HOM05D002471 ORTHO05D003712 4.9e-48 194.9 154 71.4
Ca_18711_v3 Cicer arietinum L. HOM05D002471 ORTHO05D003712 6.3e-48 194.5 155 69.7
Manes.07G072800 Manihot esculenta HOM05D002471 ORTHO05D003712 8.3e-48 194.1 155 71.0
Psat7g126400 Pisum sativum HOM05D002471 ORTHO05D003712 1.4e-47 193.4 155 69.7
Phvul.003G047600 Phaseolus vulgaris HOM05D002471 ORTHO05D003712 1.8e-47 193.0 155 71.6
VMungo0251G3159 Vigna mungo HOM05D002471 ORTHO05D003712 2.4e-47 192.6 155 71.6
Eucgr.I01130 Eucalyptus grandis HOM05D002471 ORTHO05D003712 3.1e-47 192.2 155 70.3
Lalb_Chr05g0219311 Lupinus albus HOM05D002471 ORTHO05D003712 4.1e-47 191.8 155 70.3
Lalb_Chr16g0384861 Lupinus albus HOM05D002471 ORTHO05D003712 4.1e-47 191.8 155 72.3
vmacro02027 Vaccinium macrocarpon HOM05D002471 ORTHO05D003712 4.1e-47 191.8 155 71.6
TWI75G1110 Tripterygium wilfordii HOM05D002471 ORTHO05D003712 7.0e-47 191.0 154 70.8
Hund00120 Selenicereus undatus HOM05D002471 ORTHO05D003712 9.2e-47 190.7 155 69.0
CsaV3_7G008470 Cucumis sativus L. HOM05D002471 ORTHO05D003712 1.2e-46 190.3 155 71.0
Manes.10G078500 Manihot esculenta HOM05D002471 ORTHO05D003712 1.2e-46 190.3 155 68.4
MSTRG.16728 Avicennia marina HOM05D002471 ORTHO05D003712 2.0e-46 189.5 155 72.3
DCAR_022010 Daucus carota HOM05D002471 ORTHO05D003712 1.0e-45 187.2 155 67.7
Glyma.02G103800 Glycine max HOM05D002471 ORTHO05D003712 1.0e-45 187.2 155 70.3
ClCG02G006070 Citrullus lanatus HOM05D002471 ORTHO05D003712 1.3e-45 186.8 155 70.3
Actinidia17877 Actinidia chinensis HOM05D002471 ORTHO05D003712 1.7e-45 186.4 155 70.3
Rhsim05G0086900 Rhododendron simsii HOM05D002471 ORTHO05D003712 2.3e-45 186.0 155 67.1
Glyma.07G215200 Glycine max HOM05D002471 ORTHO05D003712 5.0e-45 184.9 155 69.7
TWI79G1465 Tripterygium wilfordii HOM05D002471 ORTHO05D003712 6.6e-45 184.5 154 68.2
TAR628G0580 Trochodendron aralioides HOM05D002471 ORTHO05D003712 6.6e-45 184.5 159 67.9
MSTRG.20171 Avicennia marina HOM05D002471 ORTHO05D003712 8.6e-45 184.1 155 69.0
AUR62013236 Chenopodium quinoa HOM05D002471 ORTHO05D003712 1.1e-44 183.7 155 66.5
EL10Ac9g22322 Beta vulgaris HOM05D002471 ORTHO05D003712 1.5e-44 183.3 155 64.5
AUR62010254 Chenopodium quinoa HOM05D002471 ORTHO05D003712 1.5e-44 183.3 155 66.5
Haze_10112 Corylus avellana HOM05D002471 ORTHO05D003712 2.5e-44 182.6 155 69.0
Haze_10115 Corylus avellana HOM05D002471 ORTHO05D003712 2.5e-44 182.6 155 69.0
HanXRQChr03g0070141 Helianthus annuus HOM05D002471 ORTHO05D003712 3.3e-44 182.2 155 64.5
MD00G1138200 Malus domestica HOM05D002471 ORTHO05D003712 4.3e-44 181.8 159 66.7
AT4G34100 Arabidopsis thaliana HOM05D002471 ORTHO05D003712 2.8e-43 179.1 155 67.7
AL7G17300 Arabidopsis lyrata HOM05D002471 ORTHO05D003712 3.6e-43 178.7 155 67.1
ECA236G4146 Erigeron canadensis HOM05D002471 ORTHO05D003712 1.4e-42 176.8 155 67.1
Nn1g04785 Nelumbo nucifera HOM05D002471 ORTHO05D003712 1.4e-42 176.8 158 65.2
Sed0022765 Sechium edule HOM05D002471 ORTHO05D003712 1.8e-42 176.4 155 68.4
Sed0014443 Sechium edule HOM05D002471 ORTHO05D003712 2.3e-42 176.0 153 67.3
Hund06339 Selenicereus undatus HOM05D002471 ORTHO05D003712 3.0e-42 175.6 155 64.5
Carub.0007s0632 Capsella rubella HOM05D002471 ORTHO05D003712 6.8e-42 174.5 155 63.9
ECA234G3000 Erigeron canadensis HOM05D002471 ORTHO05D003712 6.8e-42 174.5 153 60.8
Nn5g30358 Nelumbo nucifera HOM05D002471 ORTHO05D003712 8.9e-42 174.1 159 66.7
Dinv42173 Davidia involucrata HOM05D002471 ORTHO05D003712 1.5e-41 173.3 140 71.4
Ah.01g010650 Amaranthus hybridus HOM05D002471 ORTHO05D003712 2.0e-41 172.9 155 61.9
Thhalv10024280m.g Eutrema salsugineum HOM05D002471 ORTHO05D003712 2.0e-41 172.9 155 65.2
Oeu010384.1 Olea europaea HOM05D002471 ORTHO05D003712 2.0e-41 172.9 187 58.8
PSO170G0111 Papaver somniferum HOM05D002471 ORTHO05D003712 2.6e-41 172.6 158 64.6
PSO210G1934 Papaver somniferum HOM05D002471 ORTHO05D003712 2.6e-41 172.6 158 64.6
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 5.8e-41 171.4 155 61.9
THA.LOC104807837 Tarenaya hassleriana HOM05D002471 ORTHO05D003712 9.8e-41 170.6 155 63.2
Ah.01g017910 Amaranthus hybridus HOM05D002471 ORTHO05D003712 1.3e-40 170.2 155 62.6
PGR142G0507 Punica granatum HOM05D002471 ORTHO05D003712 1.7e-40 169.9 155 61.9
arahy.Tifrunner.gnm1.ann1.IV52NX Arachis hypogaea HOM05D002471 ORTHO05D003712 6.4e-40 167.9 155 63.2
Oeu028240.1 Olea europaea HOM05D002471 ORTHO05D003712 1.8e-39 166.4 181 59.1
Sc14g0001810 Simmondsia chinensis HOM05D002471 ORTHO05D003712 5.4e-39 164.9 155 63.2
Zm00001eb387290 Zea mays HOM05D002471 ORTHO05D003712 5.4e-39 164.9 166 59.0
Aqoxy5G01185 Aquilegia oxysepala HOM05D002471 ORTHO05D003712 7.0e-39 164.5 155 60.6
Lsat_1_v5_gn_0_4161 Lactuca sativa HOM05D002471 ORTHO05D003712 7.0e-39 164.5 156 65.4
Os06g0639100 Oryza sativa ssp. japonica HOM05D002471 ORTHO05D003712 7.0e-39 164.5 166 59.0
BcaNung03791 Brassica carinata HOM05D002471 ORTHO05D003712 9.2e-39 164.1 155 63.9
C01p04750 Brassica napus HOM05D002471 ORTHO05D003712 9.2e-39 164.1 155 63.9
BolC1t00459H Brassica oleracea HOM05D002471 ORTHO05D003712 9.2e-39 164.1 155 63.9
TAR381G0378 Trochodendron aralioides HOM05D002471 ORTHO05D003712 1.6e-38 163.3 139 68.3
Zm00001eb275450 Zea mays HOM05D002471 ORTHO05D003712 2.0e-38 162.9 166 59.6
BraA01t00424Z Brassica rapa HOM05D002471 ORTHO05D003712 2.7e-38 162.5 155 63.2
MELO3C018461.2 Cucumis melo HOM05D002471 ORTHO05D003712 3.5e-38 162.2 155 64.5
A01p04350 Brassica napus HOM05D002471 ORTHO05D003712 6.0e-38 161.4 155 62.6
DCAR_029075 Daucus carota HOM05D002471 ORTHO05D003712 1.7e-37 159.8 155 58.1
CARHR242210 Cardamine hirsuta HOM05D002471 ORTHO05D003712 6.6e-37 157.9 155 60.0
Aqoxy6G01258 Aquilegia oxysepala HOM05D002471 ORTHO05D003712 1.1e-36 157.1 158 57.0
HPP92_000199 Vanilla planifolia HOM05D002471 ORTHO05D003712 2.5e-36 156.0 111 76.6
HanXRQChr16g0515001 Helianthus annuus HOM05D002471 ORTHO05D003712 3.3e-36 155.6 137 65.0
HanXRQChr09g0250641 Helianthus annuus HOM05D002471 ORTHO05D003712 2.8e-35 152.5 157 60.5
Lsat_1_v5_gn_5_115740 Lactuca sativa HOM05D002471 ORTHO05D003712 6.2e-35 151.4 143 63.6
ATR0762G060 Amborella trichopoda HOM05D002471 ORTHO05D003712 7.5e-33 144.4 163 58.3
CDE02G1550 Ceratophyllum demersum HOM05D002471 ORTHO05D003712 7.5e-33 144.4 154 57.1
HPP92_000230 Vanilla planifolia HOM05D002471 ORTHO05D003712 4.9e-32 141.7 170 55.3
HanXRQChr16g0509961 Helianthus annuus HOM05D002471 ORTHO05D003712 5.4e-31 138.3 109 69.7
CDE04G3492 Ceratophyllum demersum HOM05D002471 ORTHO05D003712 9.2e-31 137.5 154 55.8
SHI05318 Sapria himalayana HOM05D002471 ORTHO05D003712 2.7e-30 136.0 151 55.6
Actinidia12865 Actinidia chinensis HOM05D002471 ORTHO05D003712 1.7e-29 133.3 103 76.7
Sp7g31810 Schrenkiella parvula HOM05D002471 ORTHO05D003712 1.7e-29 133.3 104 71.2
unitig_60.g25459 Utricularia gibba HOM05D002471 ORTHO05D003712 8.6e-29 131.0 154 53.2
Cpa.g.sc200.25 Carica papaya HOM05D002471 ORTHO05D003712 5.6e-28 128.3 155 53.5
PSO675G4888 Papaver somniferum HOM05D002471 ORTHO05D003712 3.6e-27 125.6 158 52.5
Lj9A355T76 Lonicera japonica HOM05D002471 ORTHO05D003712 1.1e-26 124.0 228 43.9
Dinv15736 Davidia involucrata HOM05D002471 ORTHO05D003712 2.3e-26 122.9 155 52.9
PSO541G5863 Papaver somniferum HOM05D002471 ORTHO05D003712 1.2e-25 120.6 155 52.9
Thhalv10022448m.g Eutrema salsugineum HOM05D002471 ORTHO05D003712 7.1e-23 111.3 142 48.6
SEGI_08024 Sequoiadendron giganteum HOM05D002471 ORTHO05D003712 1.3e-21 107.1 159 45.3
ECA236G4164 Erigeron canadensis HOM05D002471 ORTHO05D003712 3.1e-18 95.9 143 46.9
SEGI_06740 Sequoiadendron giganteum HOM05D002471 ORTHO05D003712 6.8e-18 94.7 156 44.2
Actinidia00425 Actinidia chinensis HOM05D002471 ORTHO05D003712 1.7e-16 90.1 80 66.2
unitig_0.g96 Utricularia gibba HOM05D002471 ORTHO05D003712 1.7e-16 90.1 57 84.2
Dinv30011 Davidia involucrata HOM05D002471 ORTHO05D003712 1.1e-15 87.4 126 49.2
AagrBONN_evm.TU.Sc2ySwM_228.2821 Anthoceros agrestis HOM05D002471 ORTHO05D003712 1.4e-15 87.0 154 45.5
Pp3c9_10370 Physcomitrium patens HOM05D002471 ORTHO05D003712 2.4e-15 86.3 86 55.8
Pp3c9_10380 Physcomitrium patens HOM05D002471 ORTHO05D003712 2.4e-15 86.3 86 55.8
SMO347G0169 Selaginella moellendorffii HOM05D002471 ORTHO05D003712 5.4e-15 85.1 65 69.2
Mapoly0082s0015 Marchantia polymorpha HOM05D002471 ORTHO05D003712 9.2e-15 84.3 160 38.1
Pp3c15_7960 Physcomitrium patens HOM05D002471 ORTHO05D003712 3.5e-14 82.4 155 39.4
Pp3c15_8020 Physcomitrium patens HOM05D002471 ORTHO05D003712 3.5e-14 82.4 155 39.4
vmacro19516 Vaccinium macrocarpon HOM05D002471 ORTHO05D003712 3.9e-13 79.0 202 37.1
GSVIVG01022083001 Vitis vinifera HOM05D002471 ORTHO05D003712 5.1e-13 78.6 143 42.7
Sc14g0001820 Simmondsia chinensis HOM05D002471 ORTHO05D003712 4.3e-12 75.5 37 94.6
Actinidia12932 Actinidia chinensis HOM05D002471 ORTHO05D003712 9.6e-12 74.3 46 76.1
A03p62600 Brassica napus HOM05D002471 ORTHO05D003712 3.6e-11 72.4 119 42.9
BraA03t15330Z Brassica rapa HOM05D002471 ORTHO05D003712 6.9e-10 68.2 119 45.4
FvH4_2g04270 Fragaria vesca HOM05D000871 ORTHO05D000770 2.0e-09 66.6 35 88.6
CBR_g17730 Chara braunii HOM05D002471 ORTHO05D003712 1.1e-07 60.8 61 47.5
BcaB03g11857 Brassica carinata HOM05D002471 ORTHO05D003712 2.4e-07 59.7 48 68.8
PSO541G4500 Papaver somniferum HOM05D002471 ORTHO05D003712 3.5e-06 55.8 123 37.4


User provided reference genes

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