Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 6.6e-154 547.4 282 100.0
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 3.6e-152 541.6 282 98.2
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 5.4e-148 527.7 282 94.3
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.3e-141 506.5 288 91.0
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 6.4e-141 504.2 282 88.3
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 2.1e-139 499.2 282 88.3
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 2.7e-139 498.8 280 88.2
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 1.3e-138 496.5 282 87.2
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 1.8e-138 496.1 282 87.6
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 3.0e-138 495.4 282 85.5
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 3.3e-137 491.9 282 86.9
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 6.2e-136 487.6 282 85.1
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 3.1e-135 485.3 282 85.1
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 5.3e-135 484.6 279 89.2
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 1.5e-134 483.0 282 82.6
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 2.0e-134 482.6 282 83.7
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 2.6e-134 482.3 280 82.9
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 3.4e-134 481.9 282 83.7
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.3e-133 479.9 282 82.3
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 1.3e-133 479.9 282 82.3
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 3.8e-133 478.4 282 82.3
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 6.5e-133 477.6 282 83.7
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 6.5e-133 477.6 282 84.8
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 8.4e-133 477.2 282 81.2
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 1.1e-132 476.9 282 81.9
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 1.4e-132 476.5 282 81.6
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 1.4e-132 476.5 281 82.2
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.5e-132 475.7 282 80.9
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 2.5e-132 475.7 282 82.6
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 3.2e-132 475.3 282 80.9
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 3.2e-132 475.3 282 82.6
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 4.2e-132 474.9 282 84.4
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 5.5e-132 474.6 282 84.0
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 7.1e-132 474.2 281 83.3
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 7.1e-132 474.2 282 80.9
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 3.5e-131 471.9 282 80.5
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 4.6e-131 471.5 282 81.6
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 6.0e-131 471.1 282 84.0
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 6.0e-131 471.1 282 81.2
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 7.9e-131 470.7 282 83.3
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 1.8e-130 469.5 269 85.9
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 3.0e-130 468.8 282 81.9
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 1.1e-129 466.8 282 78.7
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 2.5e-129 465.7 282 78.4
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 4.3e-129 464.9 282 80.5
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 4.3e-129 464.9 282 80.1
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 1.6e-128 463.0 282 77.7
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 3.7e-128 461.8 284 82.0
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 4.8e-128 461.5 282 79.1
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 4.8e-128 461.5 282 78.7
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 8.2e-128 460.7 282 79.8
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 1.1e-127 460.3 282 80.5
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 1.4e-127 459.9 282 79.8
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 1.8e-127 459.5 282 81.2
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 3.1e-127 458.8 282 79.1
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 3.1e-127 458.8 282 78.4
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 6.9e-127 457.6 282 77.7
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 1.2e-126 456.8 282 78.7
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 1.2e-126 456.8 290 79.7
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 1.5e-126 456.4 282 79.8
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 2.6e-126 455.7 282 81.2
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 2.6e-126 455.7 313 76.4
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 7.6e-126 454.1 282 79.4
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 1.0e-125 453.8 282 78.0
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 1.0e-125 453.8 293 74.7
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 2.2e-125 452.6 282 79.4
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 2.2e-125 452.6 282 75.9
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 5.0e-125 451.4 316 74.1
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 6.5e-125 451.1 266 85.3
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 1.1e-124 450.3 283 78.4
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 9.3e-124 447.2 266 82.7
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.2e-123 446.8 277 77.6
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 1.2e-123 446.8 282 78.0
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.6e-123 446.4 286 77.3
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 2.7e-123 445.7 341 68.3
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 4.6e-123 444.9 278 78.1
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 1.3e-122 443.4 231 97.8
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 1.8e-122 443.0 282 76.6
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 5.1e-122 441.4 282 78.4
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 1.1e-121 440.3 266 82.3
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 2.5e-121 439.1 283 76.0
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 5.7e-121 438.0 267 81.6
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 1.6e-120 436.4 282 75.9
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 1.8e-119 433.0 282 75.2
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 3.1e-119 432.2 285 77.5
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 9.0e-119 430.6 283 74.2
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 2.6e-118 429.1 281 74.4
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 4.5e-118 428.3 283 73.1
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 5.9e-118 427.9 283 73.9
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 5.9e-118 427.9 286 74.1
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 1.7e-117 426.4 283 73.1
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.7e-117 426.4 282 75.5
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 1.7e-117 426.4 266 78.2
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 8.5e-117 424.1 283 73.9
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 1.4e-116 423.3 286 73.4
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 1.4e-116 423.3 286 73.1
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 1.9e-116 422.9 286 73.4
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 2.5e-116 422.5 282 74.8
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 2.5e-116 422.5 247 83.8
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 9.4e-116 420.6 295 71.9
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 1.2e-115 420.2 286 73.4
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 2.1e-115 419.5 283 71.7
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 2.1e-115 419.5 279 75.3
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 3.6e-115 418.7 283 72.1
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 7.9e-115 417.5 286 71.3
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 1.8e-114 416.4 283 74.2
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 2.3e-114 416.0 286 72.0
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 2.3e-114 416.0 286 72.0
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 2.3e-114 416.0 286 72.0
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 2.3e-114 416.0 282 74.5
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 2.3e-114 416.0 287 75.3
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 3.9e-114 415.2 286 71.3
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 5.1e-114 414.8 286 71.7
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 5.1e-114 414.8 286 72.0
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 8.8e-114 414.1 286 72.0
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 2.0e-113 412.9 282 71.6
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 2.0e-113 412.9 282 71.6
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 7.4e-113 411.0 281 72.2
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 3.7e-112 408.7 282 73.8
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 4.8e-112 408.3 325 64.0
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 4.8e-112 408.3 286 71.3
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 2.4e-111 406.0 276 72.5
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 3.4e-110 402.1 282 71.6
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 1.3e-109 400.2 271 73.1
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 3.2e-108 395.6 240 78.3
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.6e-107 393.3 281 68.3
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 7.9e-107 391.0 282 70.6
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 7.9e-107 391.0 282 70.6
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 6.7e-106 387.9 279 72.0
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 2.2e-104 382.9 271 70.8
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 2.8e-104 382.5 306 65.0
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 3.7e-104 382.1 213 87.3
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 2.4e-103 379.4 283 69.6
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 7.0e-103 377.9 282 70.2
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 2.0e-102 376.3 250 73.2
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 3.8e-101 372.1 283 62.9
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 7.2e-100 367.9 275 68.7
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 2.7e-99 365.9 341 59.8
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 8.0e-99 364.4 258 74.4
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.0e-98 364.0 266 68.8
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 2.0e-97 359.8 213 79.8
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 5.9e-94 348.2 225 73.8
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 2.5e-84 316.2 267 59.2
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 7.2e-84 314.7 249 65.9
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 1.2e-81 307.4 239 66.9
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 1.3e-77 293.9 283 55.5
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 1.7e-77 293.5 278 57.6
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 2.6e-73 279.6 213 60.6
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 7.1e-55 218.4 172 62.8
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 1.2e-54 217.6 173 61.3
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 3.0e-53 213.0 280 48.9
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 7.3e-52 208.4 172 62.8
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 1.6e-51 207.2 120 81.7
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 5.2e-50 202.2 327 42.8
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 2.0e-49 200.3 209 58.9
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 1.5e-44 184.1 269 41.6
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.4e-42 177.6 122 70.5
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 9.3e-39 164.9 180 52.8
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 1.0e-29 134.8 85 74.1
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 8.7e-29 131.7 280 38.2
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 3.6e-27 126.3 277 36.8
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 1.5e-25 120.9 220 35.0
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.2e-24 117.1 183 41.5
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 8.4e-24 115.2 66 86.4
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 9.3e-23 111.7 120 46.7
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 2.1e-22 110.5 164 43.3
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 3.7e-19 99.8 94 52.1
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 8.4e-16 88.6 74 66.2
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.6e-14 84.3 47 87.2


User provided reference genes

Program Settings