Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 2.7e-104 382.5 266 100.0
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 5.0e-95 351.7 266 94.0
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 1.2e-91 340.5 266 92.1
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 7.0e-89 331.3 270 90.4
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 9.2e-89 330.9 266 91.0
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 2.7e-88 329.3 270 90.0
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 1.7e-87 326.6 270 90.0
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 1.5e-75 287.0 272 81.6
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 2.1e-72 276.6 271 77.9
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 6.0e-72 275.0 278 77.7
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 1.9e-70 270.0 284 76.1
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 1.2e-69 267.3 269 78.1
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 2.4e-68 263.1 268 76.5
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 5.2e-68 261.9 269 78.1
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 9.0e-68 261.2 271 77.5
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 1.5e-67 260.4 268 76.9
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 2.6e-67 259.6 272 65.8
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 5.8e-67 258.5 275 76.0
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 7.6e-67 258.1 310 56.1
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 9.9e-67 257.7 273 75.8
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 9.9e-67 257.7 280 74.3
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 9.9e-67 257.7 280 68.9
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 2.2e-66 256.5 250 66.0
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 6.4e-66 255.0 269 75.8
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 6.4e-66 255.0 269 75.8
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 8.4e-66 254.6 285 72.3
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 2.4e-65 253.1 242 80.6
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 3.2e-65 252.7 287 73.5
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 5.4e-65 251.9 272 75.7
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 9.3e-65 251.1 284 73.6
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 9.3e-65 251.1 278 73.4
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 1.2e-64 250.8 279 73.5
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 1.2e-64 250.8 283 73.5
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 1.6e-64 250.4 271 75.6
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 1.6e-64 250.4 281 73.0
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 2.1e-64 250.0 277 74.7
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 3.5e-64 249.2 270 76.3
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 6.0e-64 248.4 281 69.4
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 7.8e-64 248.1 284 71.1
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 7.8e-64 248.1 277 74.4
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 1.0e-63 247.7 269 74.3
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 1.0e-63 247.7 282 72.0
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 1.3e-63 247.3 281 69.4
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 6.6e-63 245.0 220 85.5
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 8.7e-63 244.6 281 73.3
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 1.1e-62 244.2 280 66.4
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 1.1e-62 244.2 265 63.8
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 1.5e-62 243.8 272 71.0
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 2.5e-62 243.0 280 72.5
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 2.5e-62 243.0 268 73.9
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 3.3e-62 242.7 288 65.6
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 5.6e-62 241.9 283 73.1
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 7.3e-62 241.5 280 72.9
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 7.3e-62 241.5 216 85.2
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 9.6e-62 241.1 274 71.5
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 1.6e-61 240.4 281 71.9
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 3.6e-61 239.2 280 72.1
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 3.6e-61 239.2 280 72.1
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 4.8e-61 238.8 280 72.1
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 4.8e-61 238.8 281 71.9
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 4.8e-61 238.8 281 72.6
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 4.8e-61 238.8 280 61.1
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 6.2e-61 238.4 280 72.5
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 8.1e-61 238.0 281 70.8
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 1.1e-60 237.7 286 68.2
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 2.4e-60 236.5 271 60.5
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 2.4e-60 236.5 271 71.6
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 2.4e-60 236.5 221 84.6
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 4.0e-60 235.7 289 59.9
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 5.3e-60 235.3 281 70.5
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 6.9e-60 235.0 196 92.9
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 6.9e-60 235.0 308 66.6
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.5e-59 233.8 294 69.4
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.5e-59 233.8 294 69.4
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 1.7e-58 230.3 226 82.3
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 3.8e-58 229.2 283 71.7
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 6.4e-58 228.4 251 74.9
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 1.1e-57 227.6 281 71.2
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 4.2e-57 225.7 215 72.6
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 1.6e-56 223.8 196 86.2
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.1e-56 223.4 255 61.2
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 1.6e-53 213.8 364 45.6
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 4.0e-52 209.1 182 87.9
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 7.6e-51 204.9 193 73.6
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 4.9e-50 202.2 231 61.9
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 6.7e-47 191.8 216 61.1
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 1.9e-46 190.3 212 62.3
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 2.1e-45 186.8 208 73.6
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 4.8e-45 185.7 218 57.3
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 1.5e-43 180.6 93 92.5
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 5.8e-43 178.7 95 90.5
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 8.4e-42 174.9 234 49.6
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.6e-40 170.6 95 87.4
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.6e-40 170.6 95 87.4
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 1.8e-39 167.2 85 91.8
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 5.7e-38 162.2 88 88.6
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 3.7e-37 159.5 85 90.6
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 5.3e-36 155.6 191 53.9
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 9.0e-36 154.8 85 88.2
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 1.0e-31 141.4 210 70.5
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 2.0e-27 127.1 218 56.4
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 4.5e-27 125.9 143 62.9
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 3.8e-26 122.9 203 69.5
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 1.4e-23 114.4 117 55.6
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 6.7e-23 112.1 91 63.7
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 1.4e-20 104.4 68 77.9
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 6.9e-20 102.1 59 88.1
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 2.0e-14 84.0 53 75.5
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 3.3e-14 83.2 185 44.3
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 5.7e-14 82.4 45 86.7
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 8.2e-13 78.6 93 53.8
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 3.5e-11 73.2 44 77.3
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 9.4e-09 65.1 54 64.8
MCO04G309 Micromonas commoda HOM05D007062 ORTHO05D008941 3.0e-07 60.1 53 58.5


User provided reference genes

Program Settings