Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1211.4 Capsicum annuum HOM05D003223 ORTHO05D004865 2.9e-73 278.5 142 100.0
CAN.G134.46 Capsicum annuum HOM05D003223 ORTHO05D004865 1.0e-46 190.3 134 77.6
Peaxi162Scf00647g00521 Petunia axillaris HOM05D003223 ORTHO05D004865 3.3e-45 185.3 134 76.1
Solyc01g096830.3 Solanum lycopersicum HOM05D003223 ORTHO05D004865 2.8e-44 182.2 135 75.6
Sopen01g040530 Solanum pennellii HOM05D003223 ORTHO05D004865 2.8e-44 182.2 135 75.6
Sopen01g040540 Solanum pennellii HOM05D003223 ORTHO05D004865 2.8e-44 182.2 135 75.6
PGSC0003DMG400027506 Solanum tuberosum HOM05D003223 ORTHO05D004865 6.3e-44 181.0 135 74.8
Nitab4.5_0002687g0120 Nicotiana tabacum HOM05D003223 ORTHO05D004865 3.1e-43 178.7 134 73.1
Nitab4.5_0006602g0010 Nicotiana tabacum HOM05D003223 ORTHO05D004865 4.1e-43 178.3 134 73.9
Oeu024852.1 Olea europaea HOM05D003223 ORTHO05D004865 1.3e-28 130.2 141 56.7
Oeu044063.4 Olea europaea HOM05D003223 ORTHO05D004865 1.3e-28 130.2 142 58.5
Cc11_g05040 Coffea canephora HOM05D003223 ORTHO05D004865 9.1e-27 124.0 139 56.1
Psat5g057040 Pisum sativum HOM05D003223 ORTHO05D004865 1.6e-26 123.2 148 54.7
Atru.chr8.881 Acer truncatum HOM05D003223 ORTHO05D004865 2.0e-26 122.9 148 54.1
Dinv18129 Davidia involucrata HOM05D003223 ORTHO05D004865 2.2e-25 119.4 148 54.7
Ca_17035_v3 Cicer arietinum L. HOM05D003223 ORTHO05D004865 2.9e-25 119.0 148 54.1
Hma1.2p1_1945F.1_g308610 Hydrangea macrophylla HOM05D003223 ORTHO05D004865 8.5e-25 117.5 144 53.5
CsaV3_2G004550 Cucumis sativus L. HOM05D003223 ORTHO05D004865 1.5e-24 116.7 147 51.7
Thecc.05G191900 Theobroma cacao HOM05D003223 ORTHO05D004865 2.5e-24 115.9 148 52.7
ClCG02G016210 Citrullus lanatus HOM05D003223 ORTHO05D004865 4.2e-24 115.2 147 51.7
Actinidia26635 Actinidia chinensis HOM05D003223 ORTHO05D004865 5.5e-24 114.8 139 56.1
MSTRG.8249 Avicennia marina HOM05D003223 ORTHO05D004865 7.2e-24 114.4 141 52.5
CSS0030679 Camellia sinensis var. sinensis HOM05D003223 ORTHO05D004865 9.4e-24 114.0 147 50.3
Cfa020911 Carpinus fangiana HOM05D003223 ORTHO05D004865 1.2e-23 113.6 139 54.0
Sed0001545 Sechium edule HOM05D003223 ORTHO05D004865 1.2e-23 113.6 147 50.3
Haze_19344 Corylus avellana HOM05D003223 ORTHO05D004865 1.6e-23 113.2 139 54.0
MELO3C004336.2 Cucumis melo HOM05D003223 ORTHO05D004865 1.6e-23 113.2 147 50.3
QL10p038436 Quercus lobata HOM05D003223 ORTHO05D004865 2.7e-23 112.5 147 51.0
unitig_0.g1012 Utricularia gibba HOM05D003223 ORTHO05D004865 2.7e-23 112.5 140 49.3
Medtr3g097560 Medicago truncatula HOM05D003223 ORTHO05D004865 6.1e-23 111.3 148 51.4
Sc09g0001160 Simmondsia chinensis HOM05D003223 ORTHO05D004865 6.1e-23 111.3 144 49.3
vmacro18729 Vaccinium macrocarpon HOM05D003223 ORTHO05D004865 6.1e-23 111.3 150 52.7
Glyma.04G204800 Glycine max HOM05D003223 ORTHO05D004865 1.0e-22 110.5 137 51.8
Lj3A927G13 Lonicera japonica HOM05D003223 ORTHO05D004865 1.0e-22 110.5 154 49.4
Potri.004G137100 Populus trichocarpa HOM05D003223 ORTHO05D004865 1.0e-22 110.5 142 52.1
CiPaw.15G184200 Carya illinoinensis HOM05D003223 ORTHO05D004865 1.8e-22 109.8 148 50.7
Glyma.06G160800 Glycine max HOM05D003223 ORTHO05D004865 1.8e-22 109.8 145 51.7
Sed0007652 Sechium edule HOM05D003223 ORTHO05D004865 2.3e-22 109.4 145 51.0
Dinv17906 Davidia involucrata HOM05D003223 ORTHO05D004865 3.0e-22 109.0 148 50.7
Hma1.2p1_1945F.1_g308620 Hydrangea macrophylla HOM05D003223 ORTHO05D004865 3.0e-22 109.0 141 51.8
CANSAT54G2149 Cannabis sativa HOM05D003223 ORTHO05D004865 4.0e-22 108.6 135 54.1
Duzib177G0522 Durio zibethinus HOM05D003223 ORTHO05D004865 4.0e-22 108.6 146 52.7
Potri.T012200 Populus trichocarpa HOM05D003223 ORTHO05D004865 5.2e-22 108.2 142 50.0
DCAR_020438 Daucus carota HOM05D003223 ORTHO05D004865 6.8e-22 107.8 147 48.3
vmacro06742 Vaccinium macrocarpon HOM05D003223 ORTHO05D004865 6.8e-22 107.8 150 51.3
EL10Ac2g04575 Beta vulgaris HOM05D003223 ORTHO05D004865 8.8e-22 107.5 145 47.6
Sp2g23580 Schrenkiella parvula HOM05D003223 ORTHO05D004865 1.2e-21 107.1 135 52.6
Thhalv10003540m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 1.5e-21 106.7 137 51.8
Lj1g0018228 Lotus japonicus HOM05D003223 ORTHO05D004865 2.0e-21 106.3 141 51.1
PGR031G3736 Punica granatum HOM05D003223 ORTHO05D004865 2.0e-21 106.3 135 48.9
Rhsim02G0071800 Rhododendron simsii HOM05D003223 ORTHO05D004865 2.0e-21 106.3 149 49.7
Gohir.A13G115100 Gossypium hirsutum HOM05D003223 ORTHO05D004865 2.6e-21 105.9 141 50.4
Gohir.D13G118000 Gossypium hirsutum HOM05D003223 ORTHO05D004865 2.6e-21 105.9 141 50.4
Gorai.013G132500 Gossypium raimondii HOM05D003223 ORTHO05D004865 2.6e-21 105.9 141 50.4
Eucgr.H05054 Eucalyptus grandis HOM05D003223 ORTHO05D004865 3.4e-21 105.5 147 46.9
Phvul.009G158500 Phaseolus vulgaris HOM05D003223 ORTHO05D004865 3.4e-21 105.5 145 48.3
Actinidia20597 Actinidia chinensis HOM05D003223 ORTHO05D004865 4.4e-21 105.1 147 47.6
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 4.4e-21 105.1 147 47.6
BcaB07g29887 Brassica carinata HOM05D003223 ORTHO05D004865 5.7e-21 104.8 132 50.8
COL.COLO4_04896 Corchorus olitorius HOM05D003223 ORTHO05D004865 5.7e-21 104.8 113 58.4
BcaC04g23507 Brassica carinata HOM05D003223 ORTHO05D004865 7.5e-21 104.4 137 50.4
C09p07570 Brassica napus HOM05D003223 ORTHO05D004865 7.5e-21 104.4 137 50.4
BolC9t53674H Brassica oleracea HOM05D003223 ORTHO05D004865 7.5e-21 104.4 137 50.4
Sabra19G0010900 Salix brachista HOM05D003223 ORTHO05D004865 9.8e-21 104.0 142 48.6
Lsat_1_v5_gn_4_179580 Lactuca sativa HOM05D003223 ORTHO05D004865 1.3e-20 103.6 88 64.8
Sabra19G0001800 Salix brachista HOM05D003223 ORTHO05D004865 1.3e-20 103.6 142 48.6
AT5G23630 Arabidopsis thaliana HOM05D003223 ORTHO05D004865 1.7e-20 103.2 132 52.3
A02p40880 Brassica napus HOM05D003223 ORTHO05D004865 1.7e-20 103.2 132 50.8
BraA02t09034Z Brassica rapa HOM05D003223 ORTHO05D004865 1.7e-20 103.2 132 50.8
Carub.0006s2139 Capsella rubella HOM05D003223 ORTHO05D004865 1.7e-20 103.2 133 51.9
DCAR_009034 Daucus carota HOM05D003223 ORTHO05D004865 1.7e-20 103.2 147 47.6
Manes.17G018800 Manihot esculenta HOM05D003223 ORTHO05D004865 1.7e-20 103.2 148 48.6
Aqoxy4G02048 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 2.2e-20 102.8 149 46.3
Cpa.g.sc170.60 Carica papaya HOM05D003223 ORTHO05D004865 2.2e-20 102.8 109 56.0
TWI31G0834 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 2.2e-20 102.8 134 47.8
BcaC03g18022 Brassica carinata HOM05D003223 ORTHO05D004865 2.8e-20 102.4 132 50.8
A09p06850 Brassica napus HOM05D003223 ORTHO05D004865 2.8e-20 102.4 135 48.9
C02p60780 Brassica napus HOM05D003223 ORTHO05D004865 2.8e-20 102.4 132 50.8
BolC2t12130H Brassica oleracea HOM05D003223 ORTHO05D004865 2.8e-20 102.4 132 50.8
AUR62008992 Chenopodium quinoa HOM05D003223 ORTHO05D004865 3.7e-20 102.1 126 50.8
AUR62023309 Chenopodium quinoa HOM05D003223 ORTHO05D004865 3.7e-20 102.1 126 50.8
THA.LOC104800414 Tarenaya hassleriana HOM05D003223 ORTHO05D004865 4.8e-20 101.7 139 50.4
BraA09t36331Z Brassica rapa HOM05D003223 ORTHO05D004865 6.3e-20 101.3 135 48.9
FAN04G0579 Fragaria x ananassa HOM05D003223 ORTHO05D004865 6.3e-20 101.3 139 49.6
TPR.G7796 Trifolium pratense HOM05D003223 ORTHO05D004865 6.3e-20 101.3 137 48.9
Ah.04g166340 Amaranthus hybridus HOM05D002795 ORTHO05D004865 1.8e-19 99.8 141 46.8
ECA232G4880 Erigeron canadensis HOM05D003223 ORTHO05D004865 1.8e-19 99.8 88 62.5
Thhalv10027626m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 1.8e-19 99.8 108 55.6
VMungo1309G2105 Vigna mungo HOM05D003223 ORTHO05D004865 1.8e-19 99.8 104 55.8
arahy.Tifrunner.gnm1.ann1.KDQ8ZI Arachis hypogaea HOM05D003223 ORTHO05D004865 2.4e-19 99.4 139 48.2
arahy.Tifrunner.gnm1.ann1.MF06QU Arachis hypogaea HOM05D003223 ORTHO05D004865 2.4e-19 99.4 139 48.2
Ciclev10018565m.g Citrus clementina HOM05D003223 ORTHO05D004865 2.4e-19 99.4 148 45.3
Lalb_Chr11g0068881 Lupinus albus HOM05D003223 ORTHO05D004865 2.4e-19 99.4 142 47.9
FvH4_5g30560 Fragaria vesca HOM05D003223 ORTHO05D004865 3.1e-19 99.0 139 48.2
FAN08G3025 Fragaria x ananassa HOM05D003223 ORTHO05D004865 3.1e-19 99.0 139 48.2
FAN18G2297 Fragaria x ananassa HOM05D003223 ORTHO05D004865 3.1e-19 99.0 139 48.2
HanXRQChr09g0265231 Helianthus annuus HOM05D003223 ORTHO05D004865 3.1e-19 99.0 86 62.8
TWI75G0742 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 4.1e-19 98.6 134 47.8
CiPaw.16G118900 Carya illinoinensis HOM05D003223 ORTHO05D004865 5.4e-19 98.2 148 48.0
VMungo1127G0078 Vigna mungo HOM05D003223 ORTHO05D004865 5.4e-19 98.2 145 45.5
Lalb_Chr08g0237721 Lupinus albus HOM05D003223 ORTHO05D004865 9.1e-19 97.4 142 47.2
AL6G34910 Arabidopsis lyrata HOM05D003223 ORTHO05D004865 1.2e-18 97.1 134 48.5
Aa31LG11G3010 Aethionema arabicum HOM05D003223 ORTHO05D004865 1.6e-18 96.7 134 47.0
Migut.N00792 Erythranthe guttata HOM05D003223 ORTHO05D004865 2.0e-18 96.3 136 44.9
FAN13G2597 Fragaria x ananassa HOM05D003223 ORTHO05D004865 2.0e-18 96.3 139 46.8
CARHR189920 Cardamine hirsuta HOM05D003223 ORTHO05D004865 4.5e-18 95.1 140 49.3
Prupe.1G560300 Prunus persica HOM05D003223 ORTHO05D004865 4.5e-18 95.1 149 45.6
Hund13720 Selenicereus undatus HOM05D003223 ORTHO05D004865 4.5e-18 95.1 145 44.8
RcHm_v2.0_Chr7g0225451 Rosa chinensis HOM05D003223 ORTHO05D004865 7.7e-18 94.4 140 45.7
Aqoxy5G02750 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 1.7e-17 93.2 150 48.0
MD08G1222500 Malus domestica HOM05D003223 ORTHO05D004865 1.7e-17 93.2 149 46.3
FAN02G4497 Fragaria x ananassa HOM05D001060 ORTHO05D000905 2.3e-17 92.8 139 46.0
HPP92_022135 Vanilla planifolia HOM05D003223 ORTHO05D004865 5.0e-17 91.7 133 47.4
SGA_v2.0_scaffold5281G54621 Striga asiatica HOM05D003223 ORTHO05D004865 8.6e-17 90.9 105 56.2
HPP92_022123 Vanilla planifolia HOM05D003223 ORTHO05D004865 8.6e-17 90.9 133 47.4
PSO384G3388 Papaver somniferum HOM05D003223 ORTHO05D004865 1.9e-16 89.7 93 54.8
MSTRG.297 Avicennia marina HOM05D003223 ORTHO05D004865 2.5e-16 89.4 183 38.8
MD15G1415900 Malus domestica HOM05D003223 ORTHO05D004865 2.5e-16 89.4 143 46.2
CDE02G1396 Ceratophyllum demersum HOM05D003223 ORTHO05D004865 4.2e-16 88.6 149 45.0
Nn3g20196 Nelumbo nucifera HOM05D003223 ORTHO05D004865 5.5e-16 88.2 145 43.4
SEGI_06157 Sequoiadendron giganteum HOM05D003223 ORTHO05D004865 1.2e-15 87.0 133 42.9
Mapoly0002s0327 Marchantia polymorpha HOM05D003223 ORTHO05D004865 1.6e-15 86.7 115 47.8
TAR544G0002 Trochodendron aralioides HOM05D003223 ORTHO05D004865 2.8e-15 85.9 120 47.5
PSO339G5522 Papaver somniferum HOM05D003223 ORTHO05D004865 3.0e-14 82.4 148 39.9
Zm00001eb349830 Zea mays HOM05D003223 ORTHO05D004865 4.0e-14 82.0 116 48.3
Pp3c2_5380 Physcomitrium patens HOM05D003223 ORTHO05D004865 8.9e-14 80.9 148 41.2
Os05g0402800 Oryza sativa ssp. japonica HOM05D003223 ORTHO05D004865 1.2e-13 80.5 135 43.0
Zm00001eb287640 Zea mays HOM05D003223 ORTHO05D004865 1.5e-13 80.1 131 41.2
AagrBONN_evm.TU.Sc2ySwM_368.2673 Anthoceros agrestis HOM05D003223 ORTHO05D004865 3.4e-13 79.0 83 53.0
ATR0064G088 Amborella trichopoda HOM05D003223 ORTHO05D004865 9.8e-13 77.4 142 40.1
Duzib106G1784 Durio zibethinus HOM05D003223 ORTHO05D004865 1.4e-11 73.6 78 55.1
Actinidia19950 Actinidia chinensis HOM05D003223 ORTHO05D004865 4.1e-11 72.0 78 53.8
SMO276G0045 Selaginella moellendorffii HOM05D003223 ORTHO05D004865 7.0e-11 71.2 123 42.3
Actinidia28935 Actinidia chinensis HOM05D003223 ORTHO05D004865 4.5e-10 68.6 117 44.4
CDE04G2131 Ceratophyllum demersum HOM05D003223 ORTHO05D004865 5.0e-09 65.1 74 52.7
CBR_g48843 Chara braunii HOM05D003223 ORTHO05D004865 1.1e-08 63.9 58 62.1
TAR636G0413 Trochodendron aralioides HOM05D003223 ORTHO05D004865 7.3e-08 61.2 66 53.0
Cre17.g744447 Chlamydomonas reinhardtii HOM05D003223 ORTHO05D004865 6.8e-06 54.7 88 39.8


User provided reference genes

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