Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 8.5e-293 1009.6 511 100.0
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 1.2e-273 946.0 524 91.8
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 3.4e-273 944.5 511 94.1
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 3.7e-272 941.0 511 93.5
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 1.4e-247 859.4 515 86.4
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 3.0e-229 798.5 511 81.4
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 3.7e-227 791.6 512 77.3
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 2.4e-226 788.9 512 77.3
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 4.1e-218 761.5 511 74.6
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 9.0e-218 760.4 512 74.6
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 1.0e-216 756.9 526 73.4
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 6.5e-216 754.2 512 74.4
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 2.5e-215 752.3 511 73.4
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 2.5e-215 752.3 531 72.5
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 5.5e-215 751.1 512 73.8
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 5.5e-215 751.1 524 72.1
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 3.6e-214 748.4 525 72.6
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 3.6e-214 748.4 525 72.6
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 7.9e-214 747.3 526 73.0
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 5.1e-213 744.6 514 73.2
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 6.7e-213 744.2 512 73.8
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 6.7e-213 744.2 512 73.4
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 8.7e-213 743.8 513 73.5
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 1.9e-212 742.7 510 72.9
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 1.9e-212 742.7 515 72.6
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 3.3e-212 741.9 517 72.7
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 1.6e-211 739.6 525 72.4
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 4.8e-211 738.0 504 75.0
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 8.2e-211 737.3 526 70.5
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 1.1e-210 736.9 512 71.9
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 1.4e-210 736.5 511 71.8
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 4.1e-210 734.9 515 72.0
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 5.3e-210 734.6 525 70.9
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 5.3e-210 734.6 512 71.5
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 6.9e-210 734.2 525 70.7
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 6.9e-210 734.2 525 70.7
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 1.2e-209 733.4 514 71.6
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 3.4e-209 731.9 512 72.5
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 3.4e-209 731.9 535 70.1
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 1.0e-208 730.3 512 72.3
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 5.0e-208 728.0 505 72.3
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 6.5e-208 727.6 511 70.8
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 1.1e-207 726.9 513 71.0
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 2.5e-207 725.7 513 70.8
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 3.2e-207 725.3 514 71.0
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 5.5e-207 724.5 523 70.4
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 1.8e-205 719.5 525 70.1
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 1.8e-205 719.5 564 66.7
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 5.1e-205 718.0 555 66.5
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 5.1e-205 718.0 529 69.6
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 6.7e-205 717.6 514 70.0
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 6.7e-205 717.6 513 70.0
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 4.4e-204 714.9 513 69.0
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 7.4e-204 714.1 515 70.1
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 3.1e-202 708.8 527 68.7
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 1.2e-201 706.8 500 71.8
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 1.5e-201 706.4 497 73.2
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 2.0e-201 706.1 527 68.9
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 3.8e-200 701.8 527 67.9
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 3.9e-197 691.8 512 66.6
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 6.7e-197 691.0 512 66.2
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 6.7e-197 691.0 546 65.9
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 1.4e-194 683.3 513 67.4
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 5.3e-194 681.4 505 66.1
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 7.0e-194 681.0 512 68.8
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 1.7e-192 676.4 484 71.5
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 1.6e-190 669.8 521 65.6
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 8.0e-190 667.5 500 67.6
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 1.4e-189 666.8 513 66.5
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 1.4e-189 666.8 511 66.1
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 5.2e-189 664.8 513 65.7
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 1.5e-188 663.3 465 71.6
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 5.7e-188 661.4 502 66.7
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 8.2e-187 657.5 513 66.1
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 2.0e-185 652.9 513 66.1
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 2.7e-185 652.5 511 65.8
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 1.7e-184 649.8 508 65.6
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 1.7e-184 649.8 513 65.3
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 2.9e-184 649.0 513 65.7
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 3.8e-184 648.7 513 64.5
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 5.0e-184 648.3 513 65.1
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 8.5e-184 647.5 508 64.6
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 1.5e-183 646.7 534 63.7
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 3.2e-183 645.6 509 66.4
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 4.2e-183 645.2 511 67.1
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 7.2e-183 644.4 532 63.9
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 2.3e-181 639.4 505 65.3
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 5.7e-180 634.8 533 62.7
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 1.3e-179 633.6 522 63.2
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 1.3e-179 633.6 509 63.5
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 1.1e-178 630.6 522 62.5
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 2.4e-178 629.4 523 63.1
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 7.0e-178 627.9 515 63.5
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 1.2e-177 627.1 519 63.6
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.9e-175 619.8 430 72.3
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 9.5e-175 617.5 511 62.0
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 6.8e-173 611.3 527 62.2
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 2.0e-172 609.8 521 61.6
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 3.4e-172 609.0 510 62.2
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 5.7e-172 608.2 527 62.0
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 1.7e-171 606.7 526 62.0
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 1.7e-171 606.7 527 62.6
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 1.6e-169 600.1 514 59.7
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 3.3e-167 592.4 511 61.3
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 5.6e-167 591.7 510 60.4
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 6.1e-166 588.2 443 69.1
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 1.6e-158 563.5 448 65.2
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 1.9e-154 550.1 441 65.1
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 1.8e-149 533.5 496 57.7
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 1.5e-140 503.8 355 71.5
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 1.5e-127 460.7 391 60.9
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 2.0e-124 450.3 449 57.0
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 7.6e-124 448.4 528 46.0
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 3.4e-116 422.9 517 44.9
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 8.4e-115 418.3 498 43.4
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 1.1e-114 417.9 387 57.1
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 4.2e-114 416.0 468 52.6
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 5.7e-95 352.4 478 43.1
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 1.0e-56 225.3 137 80.3
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 1.3e-54 218.4 436 36.2
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 1.1e-42 178.7 123 74.0
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 5.2e-32 143.3 136 60.3
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 5.6e-26 123.2 258 35.7
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 6.8e-24 116.3 77 71.4
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 2.0e-23 114.8 76 69.7
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 2.9e-22 110.9 73 71.2
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 6.4e-22 109.8 104 59.6
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 8.4e-22 109.4 72 77.8
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-21 107.8 141 39.7
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 8.7e-19 99.4 65 69.2
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 3.4e-15 87.4 270 28.1
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-12 77.4 53 60.4
MCO11G935 Micromonas commoda HOM05D005650 ORTHO05D007020 7.3e-10 69.7 137 32.8
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 1.4e-08 65.5 116 40.5
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 9.0e-08 62.8 46 69.6
Actinidia18430 Actinidia chinensis HOM05D020173 ORTHO05D007020 5.8e-07 60.1 60 53.3
Actinidia18436 Actinidia chinensis HOM05D005650 ORTHO05D007020 4.9e-06 57.0 56 53.6


User provided reference genes

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