Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 0.0e+00 1100.5 543 100.0
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 4.5e-284 980.7 511 94.3
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 1.7e-283 978.8 511 94.1
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 4.0e-272 941.0 514 89.7
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 1.0e-256 889.8 483 90.7
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 4.9e-230 801.2 518 75.7
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 1.0e-227 793.5 516 75.2
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 3.9e-227 791.6 514 75.9
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 3.3e-226 788.5 521 74.5
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 5.6e-226 787.7 516 74.2
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 5.6e-226 787.7 516 75.8
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 1.6e-225 786.2 516 74.8
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 1.6e-225 786.2 518 73.0
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 3.6e-225 785.0 517 73.7
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.1e-224 781.9 523 71.7
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 9.0e-224 780.4 517 73.7
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 2.0e-223 779.2 515 73.4
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.4e-223 778.5 518 72.2
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 5.8e-223 777.7 515 72.6
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 1.7e-222 776.2 513 73.7
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 1.7e-222 776.2 516 72.3
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 1.7e-222 776.2 516 73.4
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 1.7e-222 776.2 516 73.4
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 4.9e-222 774.6 516 73.1
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 1.1e-221 773.5 539 72.4
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 1.4e-221 773.1 518 73.7
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 4.2e-221 771.5 516 73.1
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 5.4e-221 771.2 535 69.9
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 1.2e-220 770.0 517 73.9
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 4.6e-220 768.1 516 72.5
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 6.0e-220 767.7 516 73.8
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 1.0e-219 766.9 537 71.1
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 2.3e-219 765.8 517 73.7
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 1.9e-218 762.7 516 72.9
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 4.3e-218 761.5 520 69.6
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 1.3e-217 760.0 516 72.7
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 1.6e-217 759.6 516 71.5
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 8.1e-217 757.3 563 67.7
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 6.9e-216 754.2 517 71.6
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 9.0e-216 753.8 516 72.3
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 5.8e-215 751.1 513 71.5
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 3.8e-214 748.4 513 70.6
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 4.9e-214 748.0 516 71.9
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 8.4e-214 747.3 522 70.5
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 1.1e-213 746.9 513 71.5
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 1.1e-213 746.9 516 71.5
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 1.4e-213 746.5 516 71.5
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 1.9e-213 746.1 516 71.7
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 1.6e-212 743.0 519 71.3
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 2.1e-212 742.7 516 70.7
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 3.5e-212 741.9 519 71.1
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 1.3e-211 740.0 516 70.5
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 6.7e-211 737.6 514 72.0
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 6.7e-211 737.6 516 70.2
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 1.3e-209 733.4 516 70.2
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.7e-209 731.9 491 71.9
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 3.7e-209 731.9 521 69.5
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 4.8e-209 731.5 520 69.2
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 9.0e-208 727.2 519 68.2
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 9.0e-208 727.2 520 68.7
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 9.0e-208 727.2 526 68.4
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 1.2e-207 726.9 514 68.9
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 3.4e-207 725.3 512 69.5
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 3.8e-206 721.8 516 68.8
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 4.9e-206 721.5 516 68.2
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 1.2e-204 716.8 520 67.5
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 3.5e-204 715.3 516 68.6
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 5.1e-203 711.4 516 67.6
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 6.7e-203 711.1 516 67.6
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 1.5e-202 709.9 516 67.4
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 7.4e-202 707.6 517 67.1
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 1.6e-201 706.4 516 67.4
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 2.1e-201 706.1 519 66.7
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.1e-200 703.7 516 66.5
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 5.3e-200 701.4 532 65.8
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 5.3e-200 701.4 524 67.2
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 2.0e-199 699.5 524 67.0
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 2.6e-199 699.1 526 66.3
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 3.4e-199 698.7 609 60.8
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 4.5e-199 698.4 515 65.8
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 1.1e-197 693.7 526 65.6
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 1.6e-196 689.9 516 67.1
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 7.9e-196 687.6 516 66.1
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 3.0e-195 685.6 529 65.4
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 3.0e-195 685.6 536 64.7
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 3.7e-193 678.7 515 63.7
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 4.1e-192 675.2 585 59.0
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 6.9e-192 674.5 337 97.3
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 1.5e-191 673.3 516 65.1
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 3.0e-187 659.1 504 69.8
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 2.4e-184 649.4 516 62.4
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 1.9e-181 639.8 514 61.9
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 2.6e-175 619.4 518 59.3
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 2.3e-171 606.3 515 60.6
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 3.3e-170 602.4 489 61.8
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 1.8e-168 596.7 459 64.3
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 1.0e-166 590.9 516 58.7
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 7.0e-160 568.2 529 54.3
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 4.2e-157 558.9 521 53.7
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 1.2e-154 550.8 395 69.1
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 2.0e-154 550.1 529 54.1
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 7.0e-152 541.6 516 54.1
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.6e-140 503.8 323 74.9
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 1.5e-138 497.3 580 47.1
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 2.4e-128 463.4 513 48.7
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 1.3e-110 404.4 313 67.1
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 1.0e-94 351.7 562 38.8
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 8.1e-92 342.0 430 47.7
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 5.7e-85 319.3 209 75.1
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 4.8e-76 289.7 193 69.4
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 3.2e-72 276.9 199 69.8
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 2.7e-71 273.9 193 68.4
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 6.1e-71 272.7 221 62.4
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 2.9e-65 253.8 179 68.2
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 5.0e-57 226.5 346 38.7
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 5.0e-57 226.5 192 56.2
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.2e-55 221.9 196 61.2
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 1.1e-48 198.7 409 31.8
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 9.2e-35 152.5 101 74.3
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 4.3e-32 143.7 108 63.0
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 5.2e-30 136.7 218 39.0
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 4.6e-26 123.6 98 63.3
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 2.8e-23 114.4 124 53.2
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 2.0e-18 98.2 70 61.4
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 3.4e-13 80.9 100 48.0
Actinidia02211 Actinidia chinensis HOM05D003492 ORTHO05D005115 5.4e-11 73.6 86 50.0
Actinidia02220 Actinidia chinensis HOM05D003492 ORTHO05D005115 4.7e-07 60.5 38 71.1
Lsat_1_v5_gn_6_70980 Lactuca sativa HOM05D000917 ORTHO05D016080 1.4e-06 58.9 53 54.7
Lsat_1_v5_gn_8_83220 Lactuca sativa HOM05D003492 ORTHO05D016080 5.2e-06 57.0 56 51.8


User provided reference genes

Program Settings