Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G118.9 Capsicum annuum HOM05D002670 ORTHO05D028444 1.5e-83 312.8 154 100.0
CAN.G625.47 Capsicum annuum HOM05D002670 ORTHO05D003079 1.4e-17 93.6 53 88.7
Solyc02g086300.4 Solanum lycopersicum HOM05D002670 ORTHO05D003079 2.3e-15 86.3 53 81.1
Sopen02g030980 Solanum pennellii HOM05D002670 ORTHO05D003079 1.9e-14 83.2 53 77.4
PGSC0003DMG400026382 Solanum tuberosum HOM05D002670 ORTHO05D003079 2.5e-14 82.8 53 81.1
CAN.G744.3 Capsicum annuum HOM05D002670 ORTHO05D003079 1.3e-13 80.5 48 85.4
Nitab4.5_0000625g0080 Nicotiana tabacum HOM05D002670 ORTHO05D003079 1.3e-13 80.5 48 77.1
Nitab4.5_0002772g0010 Nicotiana tabacum HOM05D002670 ORTHO05D003079 1.3e-13 80.5 48 77.1
Peaxi162Scf00104g00148 Petunia axillaris HOM05D002670 ORTHO05D003079 1.6e-13 80.1 50 76.0
PGSC0003DMG400024374 Solanum tuberosum HOM05D002670 ORTHO05D003079 4.8e-13 78.6 48 77.1
Solyc03g034320.3 Solanum lycopersicum HOM05D002670 ORTHO05D003079 3.1e-12 75.9 48 75.0
Sopen03g007100 Solanum pennellii HOM05D002670 ORTHO05D003079 3.1e-12 75.9 48 75.0
Nitab4.5_0003652g0010 Nicotiana tabacum HOM05D002670 ORTHO05D003079 4.0e-12 75.5 48 77.1
Nitab4.5_0000753g0140 Nicotiana tabacum HOM05D002670 ORTHO05D003079 5.3e-12 75.1 48 77.1
CAN.G82.17 Capsicum annuum HOM05D002670 ORTHO05D003079 1.2e-11 73.9 48 75.0
Peaxi162Scf00394g00093 Petunia axillaris HOM05D002670 ORTHO05D003079 1.5e-11 73.6 48 75.0
Oeu030794.1 Olea europaea HOM05D002670 ORTHO05D003079 2.9e-10 69.3 48 70.8
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 3.8e-10 68.9 49 71.4
Lj2C439T12 Lonicera japonica HOM05D002670 ORTHO05D003079 4.9e-10 68.6 50 68.0
Lj9A529T38 Lonicera japonica HOM05D002670 ORTHO05D003079 4.9e-10 68.6 50 68.0
Dinv34797 Davidia involucrata HOM05D002670 ORTHO05D003079 6.4e-10 68.2 48 70.8
Nn4g23943 Nelumbo nucifera HOM05D002670 ORTHO05D003079 6.4e-10 68.2 48 68.8
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.1e-09 67.4 49 69.4
QL02p049679 Quercus lobata HOM05D002670 ORTHO05D003079 1.4e-09 67.0 48 70.8
QL02p050533 Quercus lobata HOM05D002670 ORTHO05D003079 1.4e-09 67.0 48 70.8
Migut.L00495 Erythranthe guttata HOM05D002670 ORTHO05D003079 1.9e-09 66.6 48 66.7
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 1.9e-09 66.6 49 67.3
PGR004G2596 Punica granatum HOM05D002670 ORTHO05D003079 2.4e-09 66.2 48 64.6
TAR426G0007 Trochodendron aralioides HOM05D002670 ORTHO05D028444 2.4e-09 66.2 47 68.1
Cfa007898 Carpinus fangiana HOM05D002670 ORTHO05D028444 4.2e-09 65.5 48 64.6
Cc07_g08580 Coffea canephora HOM05D002670 ORTHO05D003079 4.2e-09 65.5 48 64.6
SGA_v2.0_scaffold1G00627 Striga asiatica HOM05D002670 ORTHO05D003079 4.2e-09 65.5 48 66.7
Cfa007897 Carpinus fangiana HOM05D002670 ORTHO05D003079 5.5e-09 65.1 48 64.6
Cfa015843 Carpinus fangiana HOM05D002670 ORTHO05D003079 7.1e-09 64.7 50 68.0
Duzib211G0486 Durio zibethinus HOM05D002670 ORTHO05D003079 7.1e-09 64.7 48 66.7
Gohir.A12G054500 Gossypium hirsutum HOM05D002670 ORTHO05D003079 7.1e-09 64.7 48 64.6
Gohir.D12G053300 Gossypium hirsutum HOM05D002670 ORTHO05D003079 7.1e-09 64.7 48 64.6
Gorai.008G056500 Gossypium raimondii HOM05D002670 ORTHO05D003079 7.1e-09 64.7 48 64.6
Lj4A187T27 Lonicera japonica HOM05D002670 ORTHO05D003079 7.1e-09 64.7 48 62.5
Lj4A190T75 Lonicera japonica HOM05D002670 ORTHO05D003079 7.1e-09 64.7 48 62.5
Lj1g0013074 Lotus japonicus HOM05D002670 ORTHO05D003079 7.1e-09 64.7 48 62.5
Potri.010G120600 Populus trichocarpa HOM05D002670 ORTHO05D003079 7.1e-09 64.7 53 58.5
ClCG11G007760 Citrullus lanatus HOM05D002670 ORTHO05D003079 9.3e-09 64.3 47 66.0
Prupe.3G147100 Prunus persica HOM05D002670 ORTHO05D003079 9.3e-09 64.3 48 64.6
Thecc.04G129500 Theobroma cacao HOM05D002670 ORTHO05D003079 9.3e-09 64.3 48 66.7
Sed0014369 Sechium edule HOM05D002670 ORTHO05D003079 1.2e-08 63.9 47 63.8
arahy.Tifrunner.gnm1.ann1.DFW75Y Arachis hypogaea HOM05D002670 ORTHO05D003079 1.6e-08 63.5 51 62.7
arahy.Tifrunner.gnm1.ann1.L9A6A1 Arachis hypogaea HOM05D002670 ORTHO05D003079 1.6e-08 63.5 51 62.7
Oeu008436.1 Olea europaea HOM05D002670 ORTHO05D003079 2.1e-08 63.2 48 64.6
CiPaw.04G044100 Carya illinoinensis HOM05D002670 ORTHO05D003079 2.7e-08 62.8 48 64.6
TWI74G1610 Tripterygium wilfordii HOM05D002670 ORTHO05D003079 2.7e-08 62.8 48 62.5
Medtr7g082570 Medicago truncatula HOM05D002670 ORTHO05D003079 3.5e-08 62.4 47 61.7
GSVIVG01011847001 Vitis vinifera HOM05D002670 ORTHO05D003079 3.5e-08 62.4 46 67.4
Atru.chr1.1623 Acer truncatum HOM05D002670 ORTHO05D003079 4.6e-08 62.0 44 70.5
Atru.chr11.216 Acer truncatum HOM05D002670 ORTHO05D003079 4.6e-08 62.0 47 61.7
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 4.6e-08 62.0 108 39.8
MELO3C008152.2 Cucumis melo HOM05D002670 ORTHO05D003079 4.6e-08 62.0 47 63.8
CsaV3_2G033820 Cucumis sativus L. HOM05D002670 ORTHO05D003079 4.6e-08 62.0 47 63.8
TWI31G1077 Tripterygium wilfordii HOM05D002670 ORTHO05D003079 4.6e-08 62.0 48 60.4
Haze_00648 Corylus avellana HOM05D002670 ORTHO05D003079 6.0e-08 61.6 46 69.6
ECA232G1450 Erigeron canadensis HOM05D002670 ORTHO05D000318 6.0e-08 61.6 59 54.2
Potri.017G118551 Populus trichocarpa HOM05D002670 ORTHO05D003079 6.0e-08 61.6 47 61.7
Hund25038 Selenicereus undatus HOM05D002670 ORTHO05D003079 6.0e-08 61.6 51 60.8
CiPaw.03G064400 Carya illinoinensis HOM05D002670 ORTHO05D003079 7.9e-08 61.2 48 62.5
Eucgr.F02787 Eucalyptus grandis HOM05D002670 ORTHO05D003079 7.9e-08 61.2 48 62.5
MD09G1255400 Malus domestica HOM05D002670 ORTHO05D003079 7.9e-08 61.2 48 60.4
MD17G1248500 Malus domestica HOM05D002670 ORTHO05D003079 7.9e-08 61.2 48 60.4
Rhsim10G0069900 Rhododendron simsii HOM05D002670 ORTHO05D003079 7.9e-08 61.2 48 58.3
Nn3g17942 Nelumbo nucifera HOM05D002670 ORTHO05D003079 1.0e-07 60.8 46 65.2
AUR62009032 Chenopodium quinoa HOM05D002670 ORTHO05D003079 1.3e-07 60.5 46 60.9
AUR62023271 Chenopodium quinoa HOM05D002670 ORTHO05D003079 1.3e-07 60.5 46 60.9
Ciclev10011795m.g Citrus clementina HOM05D002670 ORTHO05D003079 1.3e-07 60.5 50 60.0
PSO017G5433 Papaver somniferum HOM05D002670 ORTHO05D003079 1.3e-07 60.5 48 60.4
Sabra17G0098000 Salix brachista HOM05D002670 ORTHO05D003079 1.3e-07 60.5 47 63.8
CANSAT78G0266 Cannabis sativa HOM05D002670 ORTHO05D003079 1.8e-07 60.1 47 61.7
Glyma.02G088800 Glycine max HOM05D002670 ORTHO05D003079 1.8e-07 60.1 48 60.4
vmacro05529 Vaccinium macrocarpon HOM05D002670 ORTHO05D003079 1.8e-07 60.1 48 56.2
MBI16_g42428_MAGBIO Magnolia biondii HOM05D002670 ORTHO05D003079 2.3e-07 59.7 43 69.8
arahy.Tifrunner.gnm1.ann1.H8Z18X Arachis hypogaea HOM05D002670 ORTHO05D003079 3.0e-07 59.3 47 61.7
arahy.Tifrunner.gnm1.ann1.YG2QQU Arachis hypogaea HOM05D002670 ORTHO05D003079 3.0e-07 59.3 47 61.7
Lj2g0019944 Lotus japonicus HOM05D002670 ORTHO05D003079 3.0e-07 59.3 48 56.2
Manes.14G106500 Manihot esculenta HOM05D002670 ORTHO05D003079 3.0e-07 59.3 52 57.7
Ciclev10015304m.g Citrus clementina HOM05D002670 ORTHO05D003079 3.9e-07 58.9 47 59.6
Lsat_1_v5_gn_4_155800 Lactuca sativa HOM05D002670 ORTHO05D003079 3.9e-07 58.9 50 62.0
Glyma.18G294300 Glycine max HOM05D002670 ORTHO05D003079 5.1e-07 58.5 48 58.3
Manes.02G070700 Manihot esculenta HOM05D002670 ORTHO05D003079 5.1e-07 58.5 48 60.4
Phvul.004G002800 Phaseolus vulgaris HOM05D002670 ORTHO05D003079 5.1e-07 58.5 48 56.2
HPP92_008862 Vanilla planifolia HOM05D002670 ORTHO05D003079 5.1e-07 58.5 41 68.3
CSS0026920 Camellia sinensis var. sinensis HOM05D002670 ORTHO05D003079 6.7e-07 58.2 42 66.7
RcHm_v2.0_Chr2g0105131 Rosa chinensis HOM05D002670 ORTHO05D003079 6.7e-07 58.2 46 60.9
TPR.G27889 Trifolium pratense HOM05D002670 ORTHO05D003079 6.7e-07 58.2 48 54.2
GSVIVG01030990001 Vitis vinifera HOM05D002670 ORTHO05D003079 6.7e-07 58.2 48 54.2
ECA238G4203 Erigeron canadensis HOM05D002670 ORTHO05D003079 8.7e-07 57.8 44 63.6
Glyma.19G002400 Glycine max HOM05D002670 ORTHO05D003079 8.7e-07 57.8 48 58.3
EL10Ac2g04536 Beta vulgaris HOM05D002670 ORTHO05D003079 1.1e-06 57.4 50 50.0
AUR62002821 Chenopodium quinoa HOM05D002670 ORTHO05D003079 1.1e-06 57.4 46 60.9
AUR62037284 Chenopodium quinoa HOM05D002670 ORTHO05D003079 1.1e-06 57.4 46 60.9
Lalb_Chr06g0176711 Lupinus albus HOM05D002670 ORTHO05D003079 1.1e-06 57.4 45 62.2
CSS0037360 Camellia sinensis var. sinensis HOM05D002670 ORTHO05D003079 1.5e-06 57.0 47 57.4
CSS0037856 Camellia sinensis var. sinensis HOM05D002670 ORTHO05D003079 1.5e-06 57.0 47 57.4
FvH4_1g15830 Fragaria vesca HOM05D002670 ORTHO05D003079 1.5e-06 57.0 46 60.9
FAN19G0922 Fragaria x ananassa HOM05D002670 ORTHO05D003079 1.5e-06 57.0 46 60.9
FAN23G0727 Fragaria x ananassa HOM05D002670 ORTHO05D003079 1.5e-06 57.0 46 60.9
PSO017G4419 Papaver somniferum HOM05D002670 ORTHO05D003079 1.5e-06 57.0 48 56.2
Phvul.008G008100 Phaseolus vulgaris HOM05D002670 ORTHO05D003079 1.5e-06 57.0 48 58.3
THA.LOC104805582 Tarenaya hassleriana HOM05D002670 ORTHO05D003079 1.5e-06 57.0 48 47.9
Dinv16129 Davidia involucrata HOM05D002670 ORTHO05D003079 1.9e-06 56.6 48 54.2
Dinv31600 Davidia involucrata HOM05D002670 ORTHO05D003079 1.9e-06 56.6 46 63.0
HanXRQChr14g0438531 Helianthus annuus HOM05D002670 ORTHO05D003079 1.9e-06 56.6 51 62.7
HanXRQChr14g0440461 Helianthus annuus HOM05D002670 ORTHO05D003079 1.9e-06 56.6 50 58.0
VMungo1383G3475 Vigna mungo HOM05D002670 ORTHO05D003079 1.9e-06 56.6 48 56.2
Aqoxy3G00209 Aquilegia oxysepala HOM05D002670 ORTHO05D003079 2.5e-06 56.2 46 58.7
Lalb_Chr04g0257611 Lupinus albus HOM05D002670 ORTHO05D003079 2.5e-06 56.2 46 60.9
Solyc05g008910.3 Solanum lycopersicum HOM05D002670 ORTHO05D003079 2.5e-06 56.2 46 52.2
Sopen05g004670 Solanum pennellii HOM05D002670 ORTHO05D003079 2.5e-06 56.2 46 52.2
PGSC0003DMG400030530 Solanum tuberosum HOM05D002670 ORTHO05D003079 2.5e-06 56.2 46 52.2
FAN28G1199 Fragaria x ananassa HOM05D002670 ORTHO05D003079 3.3e-06 55.8 46 60.9
FAN28G1468 Fragaria x ananassa HOM05D002670 ORTHO05D003079 3.3e-06 55.8 46 60.9
HanXRQChr00c0303g0573311 Helianthus annuus HOM05D002670 ORTHO05D003079 3.3e-06 55.8 42 69.0
HanXRQChr16g0509391 Helianthus annuus HOM05D002670 ORTHO05D003079 3.3e-06 55.8 42 69.0
Lsat_1_v5_gn_2_81020 Lactuca sativa HOM05D002670 ORTHO05D003079 3.3e-06 55.8 41 65.9
Hund16180 Selenicereus undatus HOM05D002670 ORTHO05D003079 3.3e-06 55.8 49 55.1
Medtr6g004280 Medicago truncatula HOM05D002670 ORTHO05D003079 4.3e-06 55.5 46 56.5
THA.LOC104822613 Tarenaya hassleriana HOM05D002670 ORTHO05D003079 4.3e-06 55.5 48 50.0
VMungo0464G1136 Vigna mungo HOM05D002670 ORTHO05D003079 4.3e-06 55.5 48 54.2
Nitab4.5_0000694g0160 Nicotiana tabacum HOM05D002670 ORTHO05D003079 5.6e-06 55.1 45 53.3
Nitab4.5_0002112g0040 Nicotiana tabacum HOM05D002670 ORTHO05D003079 5.6e-06 55.1 45 53.3
Os01g0138800 Oryza sativa ssp. japonica HOM05D002670 ORTHO05D003079 5.6e-06 55.1 43 60.5
EL10Ac6g14315 Beta vulgaris HOM05D002670 ORTHO05D003079 7.4e-06 54.7 46 54.3
Sc11g0003640 Simmondsia chinensis HOM05D002670 ORTHO05D003079 7.4e-06 54.7 46 56.5
Carub.0005s1257 Capsella rubella HOM05D002670 ORTHO05D003079 9.6e-06 54.3 48 50.0
Peaxi162Scf00179g00314 Petunia axillaris HOM05D002670 ORTHO05D003079 9.6e-06 54.3 45 53.3
SalBow5G5472 Salvia bowleyana HOM05D002670 ORTHO05D003079 9.6e-06 54.3 43 62.8
SalBow5G5671 Salvia bowleyana HOM05D002670 ORTHO05D003079 9.6e-06 54.3 43 62.8


User provided reference genes

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