Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 0.0e+00 1968.0 1006 100.0
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 0.0e+00 1646.7 963 88.0
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 0.0e+00 1629.4 963 86.9
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 0.0e+00 1619.4 963 86.3
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 0.0e+00 1419.1 967 77.9
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 0.0e+00 1378.2 964 75.9
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 0.0e+00 1351.7 993 73.4
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 0.0e+00 1075.1 943 60.6
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 6.2e-303 1044.3 977 58.4
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 1.7e-289 999.6 949 58.1
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 5.1e-289 998.0 943 57.9
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 1.2e-287 993.4 933 57.9
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 5.2e-286 988.0 944 57.8
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 1.0e-281 973.8 949 55.8
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 4.8e-279 964.9 960 57.6
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 6.2e-279 964.5 939 55.7
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 8.1e-279 964.1 940 55.4
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 2.4e-278 962.6 968 56.2
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 5.4e-275 951.4 943 55.0
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 1.0e-273 947.2 979 53.5
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 6.6e-273 944.5 951 54.7
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 9.6e-272 940.6 916 57.1
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 1.3e-271 940.3 947 53.7
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.4e-270 936.8 945 54.7
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 4.0e-270 935.3 945 54.1
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 1.5e-269 933.3 948 55.1
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 2.6e-269 932.6 948 53.7
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 3.4e-269 932.2 952 54.7
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 2.9e-268 929.1 952 54.3
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 8.4e-268 927.5 956 54.0
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 2.1e-266 922.9 952 54.6
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.3e-265 920.2 953 54.6
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 1.5e-264 916.8 948 52.5
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 1.9e-264 916.4 947 52.6
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 4.3e-264 915.2 952 54.2
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 7.4e-264 914.4 912 55.6
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 9.6e-264 914.1 962 54.1
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 2.8e-263 912.5 1009 51.5
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 1.1e-262 910.6 955 53.1
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 1.1e-262 910.6 981 52.7
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 5.3e-262 908.3 920 55.1
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 5.8e-261 904.8 952 52.1
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 1.7e-260 903.3 962 52.2
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 2.2e-260 902.9 945 55.3
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 8.4e-260 901.0 963 52.5
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 1.9e-259 899.8 897 56.0
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 4.6e-258 895.2 913 54.0
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 5.1e-257 891.7 920 53.5
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 1.6e-255 886.7 950 52.9
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 4.8e-255 885.2 694 65.7
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 8.2e-255 884.4 963 51.2
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 1.1e-254 884.0 946 51.6
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 1.1e-254 884.0 696 64.7
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 4.1e-254 882.1 943 50.9
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 1.2e-253 880.6 938 52.5
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 1.5e-253 880.2 934 52.9
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 2.0e-253 879.8 697 64.7
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 5.8e-253 878.2 978 51.4
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 2.9e-252 875.9 949 51.2
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 3.8e-252 875.5 934 53.4
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 1.9e-251 873.2 937 50.7
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 2.5e-251 872.8 935 51.3
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 4.2e-251 872.1 950 51.1
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 2.7e-250 869.4 964 50.2
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 3.5e-250 869.0 890 51.6
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 6.1e-250 868.2 940 51.7
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 1.1e-248 864.0 952 49.8
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 1.5e-248 863.6 939 50.3
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 1.9e-248 863.2 936 50.4
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 1.9e-248 863.2 955 49.0
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 2.5e-248 862.8 942 50.2
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 5.7e-248 861.7 965 50.9
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 1.3e-247 860.5 949 50.9
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 1.6e-247 860.1 952 50.7
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 4.8e-247 858.6 938 50.9
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 3.1e-246 855.9 954 50.6
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 3.1e-246 855.9 954 50.6
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 5.3e-246 855.1 941 50.5
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.0e-244 850.9 818 55.9
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 8.5e-244 847.8 935 51.8
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 8.5e-244 847.8 949 51.8
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.1e-243 847.4 963 51.7
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 1.4e-243 847.0 979 49.2
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 1.9e-243 846.7 928 52.2
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 3.2e-243 845.9 949 51.4
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 4.2e-243 845.5 961 49.8
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 6.7e-241 838.2 938 49.8
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 2.2e-239 833.2 941 49.4
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 7.9e-234 814.7 700 60.3
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 1.4e-233 813.9 938 48.6
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 6.7e-233 811.6 955 49.1
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 2.6e-232 809.7 936 50.1
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 4.4e-232 808.9 914 49.5
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.7e-231 807.0 833 53.5
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 3.5e-229 799.3 955 49.1
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 1.3e-228 797.3 956 48.3
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 2.5e-227 793.1 968 47.9
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 2.0e-224 783.5 991 47.2
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 2.6e-224 783.1 906 48.3
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 1.2e-216 757.7 799 53.4
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 2.7e-213 746.5 965 46.2
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 3.5e-213 746.1 638 63.8
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 2.3e-209 733.4 714 55.0
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 6.1e-202 708.8 957 44.0
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 3.2e-198 696.4 673 53.2
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 2.1e-194 683.7 948 44.7
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.0e-193 681.4 950 44.8
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 7.5e-192 675.2 662 52.3
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.0e-188 664.8 732 52.9
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 3.9e-172 609.8 431 70.1
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 1.5e-171 607.8 709 46.4
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 2.1e-165 587.4 865 41.8
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 7.8e-165 585.5 419 67.5
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 1.5e-163 581.3 674 49.7
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 4.8e-154 549.7 482 58.7
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 4.9e-151 539.7 632 46.4
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.3e-148 531.6 668 44.9
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 8.7e-148 528.9 598 47.2
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 5.6e-147 526.2 711 48.2
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.4e-145 521.5 946 37.9
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 1.0e-135 488.8 657 43.1
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.9e-134 484.6 746 43.0
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 3.8e-111 407.1 739 35.6
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 9.4e-110 402.5 517 47.2
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 7.2e-102 376.3 488 43.9
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 1.6e-96 358.6 286 66.8
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 7.2e-94 349.7 545 42.9
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 2.1e-93 348.2 249 68.3
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 1.2e-88 332.4 416 46.6
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 5.4e-81 307.0 207 72.0
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 3.1e-76 291.2 195 72.8
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 3.5e-72 277.7 310 54.5
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 6.6e-71 273.5 241 57.7
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 8.9e-68 263.1 177 72.3
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 3.7e-66 257.7 242 57.4
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 3.6e-61 241.1 244 52.0
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 2.3e-60 238.4 196 69.4
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.8e-53 214.9 135 76.3
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 1.4e-49 202.6 131 71.0
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.5e-48 198.0 140 68.6
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 2.3e-47 195.3 174 53.4
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 8.1e-45 186.8 230 47.0
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 1.8e-39 169.1 114 65.8
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 4.8e-37 161.0 534 27.5
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 3.4e-27 128.3 80 72.5
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 5.9e-19 100.9 341 27.0
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 1.2e-16 93.2 545 24.4
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 5.1e-15 87.8 300 31.7
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 6.7e-15 87.4 50 84.0
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 2.2e-13 82.4 95 43.2
Cre16.g683437 Chlamydomonas reinhardtii HOM05D004501 ORTHO05D004944 2.2e-10 72.4 587 22.8
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 2.9e-10 72.0 47 66.0


User provided reference genes

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