Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.4e-248 862.4 429 100.0
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 4.7e-244 847.4 457 93.9
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 4.7e-244 847.4 457 93.9
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.3e-243 845.1 457 93.7
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.3e-243 845.1 457 93.7
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.3e-243 845.1 457 93.7
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 2.6e-242 841.6 457 93.2
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 2.8e-236 821.6 457 92.1
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 2.3e-235 818.5 454 91.6
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 2.3e-235 818.5 456 91.7
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 8.9e-235 816.6 457 91.0
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 2.2e-233 812.0 457 91.0
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 2.2e-233 812.0 457 91.0
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 2.2e-233 812.0 457 91.0
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 2.9e-233 811.6 456 91.2
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 5.4e-232 807.4 457 90.6
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 3.5e-231 804.7 440 93.2
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 4.6e-231 804.3 457 90.2
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 4.6e-231 804.3 457 90.2
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 4.6e-231 804.3 457 90.2
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 4.6e-231 804.3 457 90.2
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 4.6e-231 804.3 457 90.2
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 1.0e-230 803.1 453 90.7
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 2.3e-230 802.0 457 89.7
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 3.3e-229 798.1 453 90.1
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 5.6e-229 797.3 457 90.2
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 5.6e-229 797.3 457 90.2
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 1.2e-228 796.2 457 89.9
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 6.8e-227 790.4 457 89.5
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.6e-226 788.5 447 89.5
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 9.6e-221 770.0 456 87.1
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 9.6e-213 743.4 430 90.0
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 2.6e-210 735.3 427 89.5
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 5.8e-210 734.2 435 87.8
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 1.7e-209 732.6 458 84.9
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 1.8e-206 722.6 456 83.6
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.7e-201 706.1 421 85.7
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.9e-201 704.5 457 80.3
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 1.2e-199 699.9 455 82.6
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 5.1e-198 694.5 456 80.7
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 2.2e-193 679.1 412 87.4
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 2.9e-193 678.7 392 89.0
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.1e-192 676.8 407 88.0
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 2.5e-192 675.6 350 97.4
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 9.3e-192 673.7 349 97.4
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 1.3e-188 663.3 458 77.5
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 6.9e-187 657.5 432 81.9
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 1.8e-182 642.9 453 78.1
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.7e-181 637.9 434 78.3
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 2.0e-173 612.8 355 88.5
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 3.0e-166 589.0 297 100.0
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 9.4e-160 567.4 457 70.0
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 3.8e-153 545.4 318 87.1
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.5e-152 543.5 327 84.7
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 1.3e-137 493.8 292 86.6
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.0e-134 484.2 265 93.2
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 4.4e-133 478.8 284 85.9
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 3.0e-129 466.1 284 84.5
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 6.6e-129 464.9 329 76.0
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 5.2e-126 455.3 365 68.8
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 1.7e-121 440.3 254 88.2
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 4.4e-117 425.6 254 86.2
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 7.3e-112 408.3 312 73.1
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.6e-111 407.1 250 83.6
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 1.6e-111 407.1 254 83.5
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.7e-111 405.6 263 81.0
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 1.1e-110 404.4 218 95.4
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 2.3e-105 386.7 274 75.2
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 2.3e-105 386.7 274 75.2
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 3.1e-102 376.3 558 45.5
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 1.5e-96 357.5 262 77.9
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 3.0e-89 333.2 386 54.9
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.1e-89 332.4 330 60.3
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 8.7e-89 331.6 235 74.5
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 1.1e-88 331.3 366 52.7
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 1.4e-86 324.3 171 96.5
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 4.8e-79 299.3 189 82.0
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 4.8e-79 299.3 189 82.0
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 4.8e-79 299.3 189 82.0
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 3.1e-78 296.6 189 81.0
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 1.5e-77 294.3 169 90.5
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.0e-77 293.9 159 92.5
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 2.6e-77 293.5 236 68.2
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 4.5e-77 292.7 189 79.9
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 1.1e-75 288.1 156 95.5
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.1e-74 282.3 300 55.7
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 9.7e-72 275.0 328 50.6
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 1.8e-70 270.8 428 44.6
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 5.3e-70 269.2 373 39.9
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 3.6e-66 256.5 175 77.7
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 2.9e-60 236.9 133 92.5
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 7.9e-58 228.8 118 97.5
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 1.0e-57 228.4 128 87.5
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 5.1e-57 226.1 207 65.7
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.8e-55 220.3 321 47.7
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 4.1e-54 216.5 138 82.6
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 4.5e-53 213.0 155 71.0
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 5.9e-53 212.6 148 77.7
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 1.3e-52 211.5 137 81.8
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 1.8e-46 191.0 153 69.9
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 1.7e-44 184.5 91 96.7
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 9.4e-43 178.7 165 61.2
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 9.4e-43 178.7 197 52.8
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 8.0e-42 175.6 167 59.9
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 8.0e-42 175.6 90 98.9
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 1.0e-41 175.3 122 73.0
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.4e-41 174.9 92 96.7
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 4.0e-41 173.3 244 47.5
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 4.0e-41 173.3 110 73.6
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 6.8e-41 172.6 91 95.6
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 1.3e-39 168.3 91 94.5
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 2.2e-39 167.5 156 60.9
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 2.7e-37 160.6 81 93.8
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 7.2e-35 152.5 92 81.5
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 2.1e-34 151.0 163 58.9
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 5.2e-33 146.4 218 45.4
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 1.5e-32 144.8 106 71.7
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 6.3e-31 139.4 112 69.6
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 4.1e-30 136.7 64 100.0
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 1.2e-29 135.2 64 98.4
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 7.7e-29 132.5 129 60.5
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 1.0e-28 132.1 80 80.0
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 2.3e-28 131.0 109 63.3
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 6.6e-28 129.4 105 65.7
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 4.2e-27 126.7 64 92.2
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 8.0e-26 122.5 64 92.2
Nitab4.5_0001234g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.2e-24 118.6 92 75.0
Solyc08g029290.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.7e-23 113.6 76 75.0
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 8.3e-23 112.5 70 80.0
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 2.0e-21 107.8 64 81.2
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 2.3e-20 104.4 48 97.9
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 2.9e-20 104.0 68 79.4
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 2.9e-20 104.0 64 79.7
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 1.5e-19 101.7 58 84.5
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 1.8e-17 94.7 47 97.9
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 5.8e-16 89.7 42 97.6
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 1.1e-14 85.5 133 45.1
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 4.1e-14 83.6 50 80.0
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 1.0e-12 79.0 48 83.3
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 5.0e-12 76.6 40 90.0
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 2.5e-11 74.3 50 78.0
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.5e-11 74.3 36 91.7
ATR1125G006 Amborella trichopoda HOM05D004537 ORTHO05D005492 3.6e-10 70.5 33 93.9
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.1e-09 68.9 36 86.1
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.1e-09 68.9 36 86.1
SHI30018 Sapria himalayana HOM05D004537 ORTHO05D005492 8.9e-09 65.9 56 60.7
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 4.9e-07 60.1 30 90.0


User provided reference genes

Program Settings