Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 2.1e-214 748.8 386 100.0
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 7.1e-175 617.5 373 86.9
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 1.6e-174 616.3 373 87.1
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 7.2e-159 564.3 375 80.8
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 1.1e-154 550.4 372 79.6
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 3.2e-151 538.9 373 78.8
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 3.0e-141 505.8 338 80.8
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 1.3e-96 357.5 365 55.6
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 2.4e-93 346.7 366 55.5
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 2.1e-86 323.6 372 53.0
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 9.0e-85 318.2 371 54.4
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 2.0e-84 317.0 382 50.5
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 3.8e-83 312.8 365 50.1
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 3.8e-83 312.8 384 49.0
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 3.2e-82 309.7 363 52.3
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 1.2e-81 307.8 396 46.7
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.6e-81 307.4 388 47.2
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 3.3e-79 299.7 377 52.5
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 1.3e-78 297.7 377 46.9
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 1.6e-78 297.4 377 46.9
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 1.1e-77 294.7 388 47.4
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 6.9e-77 292.0 372 48.4
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 9.0e-77 291.6 384 50.5
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 2.6e-76 290.0 384 47.7
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 9.9e-76 288.1 368 47.8
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 4.9e-75 285.8 398 45.0
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 8.4e-75 285.0 378 45.2
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 1.4e-74 284.3 386 47.7
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 4.2e-74 282.7 378 44.7
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 1.6e-73 280.8 368 47.0
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.6e-73 280.8 394 43.7
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 3.5e-73 279.6 377 47.2
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 1.0e-72 278.1 410 43.9
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.3e-72 277.7 379 44.9
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 1.8e-72 277.3 397 42.8
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 5.1e-72 275.8 369 45.5
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.1e-71 274.6 378 44.7
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 9.6e-71 271.6 332 50.9
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 1.3e-70 271.2 388 46.1
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 2.8e-70 270.0 377 46.7
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 4.8e-70 269.2 367 45.8
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 1.1e-69 268.1 404 43.3
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.1e-69 266.5 388 43.8
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 6.9e-69 265.4 360 46.1
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 9.0e-69 265.0 380 43.7
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 1.2e-68 264.6 393 43.0
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 1.5e-68 264.2 393 44.3
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.5e-68 264.2 372 46.5
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 1.5e-68 264.2 385 43.9
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 3.4e-68 263.1 390 44.6
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 4.5e-68 262.7 369 46.3
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 7.6e-68 261.9 394 43.9
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 9.9e-68 261.5 373 44.5
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 1.7e-67 260.8 376 43.9
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 1.7e-67 260.8 366 47.0
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 1.7e-67 260.8 376 43.6
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 2.9e-67 260.0 367 47.7
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 8.4e-67 258.5 392 42.6
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 8.4e-67 258.5 373 43.4
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 1.1e-66 258.1 366 45.4
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 1.9e-66 257.3 407 42.3
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 2.4e-66 256.9 386 43.8
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 2.4e-66 256.9 365 46.8
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 3.2e-66 256.5 406 42.6
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 2.7e-65 253.4 398 40.7
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 4.6e-65 252.7 400 44.0
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 4.6e-65 252.7 373 43.4
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 6.0e-65 252.3 410 42.2
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 7.9e-65 251.9 394 44.4
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 1.0e-64 251.5 372 45.7
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 3.9e-64 249.6 393 42.0
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 1.5e-63 247.7 400 40.8
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 4.3e-63 246.1 396 42.7
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 7.4e-63 245.4 403 42.7
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 3.7e-62 243.0 399 43.9
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 3.7e-62 243.0 368 42.9
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 4.8e-62 242.7 315 49.2
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 8.2e-62 241.9 403 42.7
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 8.2e-62 241.9 408 40.9
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 3.4e-60 236.5 318 46.9
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 3.4e-60 236.5 383 40.2
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 8.4e-59 231.9 429 38.2
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 9.3e-58 228.4 365 46.0
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 4.6e-57 226.1 377 42.4
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.0e-56 224.9 355 44.5
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 1.8e-56 224.2 364 41.8
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 3.3e-55 219.9 378 42.9
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 5.7e-55 219.2 374 42.0
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 5.7e-55 219.2 426 39.9
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 7.4e-55 218.8 381 40.9
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 1.1e-53 214.9 371 42.9
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 6.9e-53 212.2 335 43.0
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.2e-52 211.5 352 44.6
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 4.5e-52 209.5 337 42.7
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 5.9e-52 209.1 399 40.1
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.0e-51 208.4 210 56.7
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 1.3e-51 208.0 379 43.0
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 2.2e-51 207.2 414 39.6
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 3.8e-51 206.5 389 42.2
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 3.8e-51 206.5 386 42.5
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 3.8e-51 206.5 389 42.2
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 1.9e-50 204.1 411 40.1
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 2.5e-50 203.8 378 40.5
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 3.2e-50 203.4 409 39.1
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 9.4e-50 201.8 417 38.6
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 3.6e-49 199.9 412 39.3
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 4.6e-49 199.5 397 37.0
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 4.6e-49 199.5 401 38.4
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 6.1e-49 199.1 361 41.8
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 7.9e-49 198.7 394 39.8
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 1.0e-48 198.4 347 42.9
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 1.0e-48 198.4 347 42.9
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 2.3e-48 197.2 173 66.5
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 3.0e-48 196.8 390 40.5
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 3.0e-48 196.8 390 40.5
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 3.0e-48 196.8 390 40.5
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 9.7e-47 191.8 355 41.4
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 9.7e-47 191.8 367 41.4
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 4.8e-46 189.5 181 60.2
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.8e-45 187.6 353 41.9
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 1.0e-43 181.8 382 39.5
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 1.3e-43 181.4 377 40.6
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.4e-42 177.9 405 35.3
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 2.5e-42 177.2 395 37.7
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 2.5e-42 177.2 395 37.7
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 9.4e-42 175.3 242 48.8
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 5.1e-40 169.5 341 38.1
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 6.7e-40 169.1 387 37.0
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 2.0e-39 167.5 397 35.8
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.3e-38 164.9 415 34.7
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 4.1e-37 159.8 379 37.7
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 9.1e-37 158.7 274 41.2
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 7.7e-36 155.6 365 34.5
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 1.4e-34 151.4 270 41.9
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 3.6e-33 146.7 343 34.1
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 5.7e-31 139.4 409 33.5
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.8e-24 117.9 196 45.9
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 4.1e-21 106.7 208 38.9
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 2.2e-19 100.9 131 45.8
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 4.7e-17 93.2 331 31.1
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 1.0e-16 92.0 180 40.0
Migut.M01016 Erythranthe guttata HOM05D008010 ORTHO05D010085 2.8e-09 67.4 246 27.2
Actinidia37514 Actinidia chinensis HOM05D000378 ORTHO05D006084 8.0e-09 65.9 46 73.9
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 2.8e-06 57.4 154 29.9
Actinidia25795 Actinidia chinensis HOM05D005109 ORTHO05D006084 4.9e-06 56.6 188 29.3


User provided reference genes

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