Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1143.23 Capsicum annuum HOM05D007352 ORTHO05D009389 2.2e-179 633.3 452 100.0
Sopen03g039940 Solanum pennellii HOM05D007352 ORTHO05D009389 5.0e-152 542.3 448 90.8
Solyc03g121110.3 Solanum lycopersicum HOM05D007352 ORTHO05D009389 1.9e-151 540.4 448 90.2
Nitab4.5_0004969g0060 Nicotiana tabacum HOM05D007352 ORTHO05D009389 8.0e-150 535.0 447 90.6
PGSC0003DMG400002522 Solanum tuberosum HOM05D007352 ORTHO05D009389 8.0e-150 535.0 448 90.4
Nitab4.5_0005085g0030 Nicotiana tabacum HOM05D007352 ORTHO05D009389 2.0e-145 520.4 454 88.5
Peaxi162Scf00038g01145 Petunia axillaris HOM05D007352 ORTHO05D009389 1.2e-140 504.6 448 87.9
Dinv27397 Davidia involucrata HOM05D007352 ORTHO05D009389 1.5e-119 434.5 446 79.6
Lj9A311T59 Lonicera japonica HOM05D007352 ORTHO05D009389 8.1e-118 428.7 439 78.8
Hma1.2p1_0430F.1_g151250 Hydrangea macrophylla HOM05D007352 ORTHO05D009389 3.1e-117 426.8 410 83.9
CSS0040101 Camellia sinensis var. sinensis HOM05D007352 ORTHO05D009389 1.2e-113 414.8 426 80.3
CSS0004060 Camellia sinensis var. sinensis HOM05D007352 ORTHO05D009389 3.5e-113 413.3 426 79.8
TAR636G0386 Trochodendron aralioides HOM05D007352 ORTHO05D009389 1.6e-110 404.4 444 75.5
TAR636G1169 Trochodendron aralioides HOM05D007352 ORTHO05D009389 1.6e-110 404.4 444 75.5
Nn2g12740 Nelumbo nucifera HOM05D007352 ORTHO05D009389 1.4e-109 401.4 443 74.3
Lsat_1_v5_gn_4_98021 Lactuca sativa HOM05D007352 ORTHO05D009389 6.9e-109 399.1 442 75.8
Rhsim08G0228600 Rhododendron simsii HOM05D007352 ORTHO05D009389 7.1e-106 389.0 445 73.9
vmacro18843 Vaccinium macrocarpon HOM05D007352 ORTHO05D009389 1.5e-103 381.3 449 74.2
Cc06_g12800 Coffea canephora HOM05D007352 ORTHO05D009389 1.6e-102 377.9 407 79.1
Aqoxy7G01368 Aquilegia oxysepala HOM05D007352 ORTHO05D009389 2.8e-102 377.1 450 70.9
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 1.8e-101 374.4 429 74.1
HanXRQChr11g0348741 Helianthus annuus HOM05D007352 ORTHO05D009389 2.9e-99 367.1 431 73.8
MBI04_g06993_MAGBIO Magnolia biondii HOM05D007352 ORTHO05D009389 2.4e-98 364.0 450 71.6
Migut.L00048 Erythranthe guttata HOM05D007352 ORTHO05D009389 1.8e-96 357.8 445 71.9
Lj6g0022790 Lotus japonicus HOM05D007352 ORTHO05D009389 6.9e-93 345.9 437 69.3
Glyma.15G131800 Glycine max HOM05D007352 ORTHO05D009389 9.0e-93 345.5 445 69.4
Hund07627 Selenicereus undatus HOM05D007352 ORTHO05D009389 2.0e-92 344.4 445 71.5
SGA_v2.0_scaffold265G46057 Striga asiatica HOM05D007352 ORTHO05D009389 5.8e-92 342.8 443 69.5
Psat1g166520 Pisum sativum HOM05D007352 ORTHO05D009389 1.7e-91 341.3 434 69.8
Sed0016070 Sechium edule HOM05D007352 ORTHO05D009389 4.9e-91 339.7 436 70.4
Phvul.006G126800 Phaseolus vulgaris HOM05D007352 ORTHO05D009389 6.5e-91 339.3 448 68.1
TPR.G26324 Trifolium pratense HOM05D007352 ORTHO05D009389 1.4e-90 338.2 447 68.0
CANSAT35G0590 Cannabis sativa HOM05D007352 ORTHO05D009389 7.1e-90 335.9 447 69.1
CDE05G2407 Ceratophyllum demersum HOM05D007352 ORTHO05D009389 9.3e-90 335.5 455 69.7
Lalb_Chr20g0120141 Lupinus albus HOM05D007352 ORTHO05D009389 9.3e-90 335.5 432 68.8
Gohir.D02G136200 Gossypium hirsutum HOM05D007352 ORTHO05D009389 2.7e-89 334.0 444 67.3
arahy.Tifrunner.gnm1.ann1.X8VU69 Arachis hypogaea HOM05D007352 ORTHO05D009389 4.6e-89 333.2 465 66.5
arahy.Tifrunner.gnm1.ann1.Y4G0P0 Arachis hypogaea HOM05D007352 ORTHO05D009389 6.0e-89 332.8 465 66.7
AUR62031951 Chenopodium quinoa HOM05D007352 ORTHO05D009389 1.3e-88 331.6 450 70.4
Haze_15863 Corylus avellana HOM05D007352 ORTHO05D009389 1.3e-88 331.6 458 67.0
EL10Ac9g21188 Beta vulgaris HOM05D007352 ORTHO05D009389 3.9e-88 330.1 434 69.8
AUR62022237 Chenopodium quinoa HOM05D007352 ORTHO05D009389 2.5e-87 327.4 450 70.0
Ca_00856_v3 Cicer arietinum L. HOM05D007352 ORTHO05D009389 3.3e-87 327.0 433 68.1
Duzib251G0222 Durio zibethinus HOM05D007352 ORTHO05D009389 4.3e-87 326.6 448 67.9
Prupe.3G056800 Prunus persica HOM05D007352 ORTHO05D009389 5.7e-87 326.2 409 72.6
COL.COLO4_27631 Corchorus olitorius HOM05D007352 ORTHO05D009389 1.3e-86 325.1 446 66.8
Gohir.A03G111600 Gossypium hirsutum HOM05D007352 ORTHO05D009389 6.3e-86 322.8 443 66.1
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 8.2e-86 322.4 436 68.3
Manes.11G031901 Manihot esculenta HOM05D007352 ORTHO05D009389 1.1e-85 322.0 459 64.9
Cpa.g.sc25.26 Carica papaya HOM05D007352 ORTHO05D009389 2.4e-85 320.9 438 68.3
QL05p019112 Quercus lobata HOM05D007352 ORTHO05D009389 2.4e-85 320.9 442 68.1
SalBow1G5626 Salvia bowleyana HOM05D007352 ORTHO05D009389 5.3e-85 319.7 440 68.0
HPP92_000532 Vanilla planifolia HOM05D007352 ORTHO05D009389 5.3e-85 319.7 429 68.3
CiPaw.02G144900 Carya illinoinensis HOM05D007352 ORTHO05D009389 2.0e-84 317.8 439 68.6
Ciclev10025103m.g Citrus clementina HOM05D007352 ORTHO05D009389 3.4e-84 317.0 430 68.4
RcHm_v2.0_Chr2g0141041 Rosa chinensis HOM05D007352 ORTHO05D009389 3.4e-84 317.0 426 60.1
MD09G1200200 Malus domestica HOM05D007352 ORTHO05D009389 4.5e-84 316.6 431 69.4
MELO3C012722.2 Cucumis melo HOM05D007352 ORTHO05D009389 1.9e-82 311.2 430 67.7
FAN02G2393 Fragaria x ananassa HOM05D007352 ORTHO05D009389 3.2e-82 310.5 425 70.4
Potri.013G105000 Populus trichocarpa HOM05D007352 ORTHO05D009389 3.2e-82 310.5 436 66.3
BraA05t20827Z Brassica rapa HOM05D007352 ORTHO05D009389 7.2e-82 309.3 429 68.1
Sabra13G0090700 Salix brachista HOM05D007352 ORTHO05D009389 7.2e-82 309.3 436 66.7
Eucgr.F03084 Eucalyptus grandis HOM05D007352 ORTHO05D009389 9.3e-82 308.9 459 66.4
Medtr2g030540 Medicago truncatula HOM05D007352 ORTHO05D009389 2.1e-81 307.8 441 66.9
CsaV3_7G026910 Cucumis sativus L. HOM05D007352 ORTHO05D009389 7.9e-81 305.8 441 67.3
A05p19210 Brassica napus HOM05D007352 ORTHO05D009389 1.3e-80 305.1 429 67.8
FvH4_6g32590 Fragaria vesca HOM05D007352 ORTHO05D009389 3.0e-80 303.9 424 69.8
BcaB02g11032 Brassica carinata HOM05D007352 ORTHO05D009389 8.7e-80 302.4 429 67.8
C06p13600 Brassica napus HOM05D007352 ORTHO05D009389 1.1e-79 302.0 434 66.6
BcaC08g43959 Brassica carinata HOM05D007352 ORTHO05D009389 9.7e-79 298.9 434 66.4
BolC6t36524H Brassica oleracea HOM05D007352 ORTHO05D009389 9.7e-79 298.9 434 66.4
Gorai.005G152200 Gossypium raimondii HOM05D007352 ORTHO05D009389 2.2e-78 297.7 419 67.1
Actinidia32110 Actinidia chinensis HOM05D007352 ORTHO05D009389 6.3e-78 296.2 226 66.8
Aa31LG10G2840 Aethionema arabicum HOM05D007352 ORTHO05D009389 9.1e-77 292.4 434 66.1
Ah.01g017290 Amaranthus hybridus HOM05D007352 ORTHO05D009389 9.1e-77 292.4 535 48.4
Cfa003634 Carpinus fangiana HOM05D007352 ORTHO05D009389 9.1e-77 292.4 429 67.4
Sp1g38610 Schrenkiella parvula HOM05D007352 ORTHO05D009389 2.6e-76 290.8 436 65.4
Thecc.02G309100 Theobroma cacao HOM05D007352 ORTHO05D009389 2.2e-75 287.7 414 68.4
GSVIVG01016956001 Vitis vinifera HOM05D007352 ORTHO05D009389 8.5e-75 285.8 451 61.4
Thhalv10011294m.g Eutrema salsugineum HOM05D007352 ORTHO05D009389 1.1e-74 285.4 436 65.1
AT1G51965 Arabidopsis thaliana HOM05D007352 ORTHO05D009389 3.9e-72 276.9 449 63.9
Atru.BG.161.p Acer truncatum HOM05D007352 ORTHO05D009389 6.7e-72 276.2 401 67.1
Carub.0001s4090 Capsella rubella HOM05D007352 ORTHO05D009389 8.8e-72 275.8 433 64.4
THA.LOC104810542 Tarenaya hassleriana HOM05D007352 ORTHO05D009389 1.3e-70 271.9 417 46.0
AL1G60010 Arabidopsis lyrata HOM05D007352 ORTHO05D009389 1.4e-69 268.5 449 62.8
Os02g0226900 Oryza sativa ssp. japonica HOM05D007352 ORTHO05D009389 5.5e-66 256.5 434 62.7
SHI11130 Sapria himalayana HOM05D007352 ORTHO05D009389 2.0e-63 248.1 459 46.0
Sc15g0001710 Simmondsia chinensis HOM05D007352 ORTHO05D009389 1.2e-60 238.8 235 54.9
FAN09G1056 Fragaria x ananassa HOM05D007352 ORTHO05D009389 3.2e-58 230.7 241 52.7
Zm00001eb205030 Zea mays HOM05D007352 ORTHO05D009389 2.2e-51 208.0 412 61.4
Aqoxy5G00202 Aquilegia oxysepala HOM05D007352 ORTHO05D009389 1.9e-42 178.3 134 64.2
SEGI_18978 Sequoiadendron giganteum HOM05D007352 ORTHO05D009389 3.2e-42 177.6 408 59.1
PSO832G0057 Papaver somniferum HOM05D007352 ORTHO05D009389 9.5e-42 176.0 277 81.2
Ah.16g103250 Amaranthus hybridus HOM05D007352 ORTHO05D009389 2.3e-35 154.8 149 57.0
Sc15g0001700 Simmondsia chinensis HOM05D007352 ORTHO05D009389 3.3e-34 151.0 90 75.6
Ah.16g103230 Amaranthus hybridus HOM05D007352 ORTHO05D009389 1.0e-32 146.0 89 74.2
VMungo0540G1340 Vigna mungo HOM05D007352 ORTHO05D009389 2.3e-32 144.8 89 71.9
MD15G1412800 Malus domestica HOM05D007352 ORTHO05D009389 7.5e-31 139.8 89 73.0
FAN05G3498 Fragaria x ananassa HOM05D001329 ORTHO05D002618 5.9e-28 130.2 89 69.7
CARHR042130 Cardamine hirsuta HOM05D007352 ORTHO05D009389 2.3e-27 128.3 89 66.3
Actinidia32109 Actinidia chinensis HOM05D000647 ORTHO05D000485 1.5e-26 125.6 71 80.3
FAN05G5710 Fragaria x ananassa HOM05D007352 ORTHO05D009389 1.1e-24 119.4 69 76.8
FAN14G1294 Fragaria x ananassa HOM05D007352 ORTHO05D009389 2.6e-23 114.8 66 77.3
ATR0751G068 Amborella trichopoda HOM05D007352 ORTHO05D009389 8.3e-22 109.8 400 54.5
SGA_v2.0_scaffold115G32057 Striga asiatica HOM05D007352 ORTHO05D009389 1.4e-16 92.4 56 69.6


User provided reference genes

Program Settings