Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 1.6e-48 195.7 94 100.0
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 1.6e-48 195.7 94 100.0
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 1.6e-48 195.7 94 100.0
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 1.1e-47 193.0 94 97.9
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 1.1e-47 193.0 94 97.9
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 1.1e-47 193.0 94 97.9
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 1.1e-47 193.0 94 97.9
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 1.1e-47 193.0 94 97.9
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 1.1e-47 193.0 94 97.9
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 1.1e-47 193.0 94 97.9
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 1.8e-47 192.2 94 96.8
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 1.8e-47 192.2 94 96.8
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 3.1e-47 191.4 94 96.8
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 4.0e-47 191.0 94 96.8
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 4.0e-47 191.0 94 96.8
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 4.0e-47 191.0 94 96.8
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 9.0e-47 189.9 94 96.8
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 9.0e-47 189.9 94 96.8
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 1.2e-46 189.5 93 96.8
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 2.0e-46 188.7 94 96.8
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.4e-46 188.0 94 94.7
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 4.4e-46 187.6 94 94.7
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 4.4e-46 187.6 94 94.7
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 4.4e-46 187.6 94 94.7
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 4.4e-46 187.6 94 94.7
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 4.4e-46 187.6 94 94.7
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 4.4e-46 187.6 94 94.7
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 96.8
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 96.8
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.7e-45 185.7 94 93.6
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 1.7e-45 185.7 94 94.7
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 1.7e-45 185.7 94 94.7
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 1.7e-45 185.7 94 94.7
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 1.7e-45 185.7 94 94.7
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 1.7e-45 185.7 94 94.7
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 1.7e-45 185.7 94 94.7
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 1.7e-45 185.7 94 94.7
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 1.7e-45 185.7 94 94.7
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 1.7e-45 185.7 94 94.7
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 1.7e-45 185.7 94 94.7
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 1.7e-45 185.7 94 94.7
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 1.7e-45 185.7 94 94.7
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 1.7e-45 185.7 94 94.7
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 1.7e-45 185.7 94 94.7
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 2.9e-45 184.9 94 94.7
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 3.8e-45 184.5 94 94.7
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 8.4e-45 183.3 94 94.7
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 8.4e-45 183.3 94 94.7
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.1e-44 183.0 94 93.6
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.9e-44 182.2 94 93.6
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.2e-44 181.4 94 92.6
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 4.2e-44 181.0 94 93.6
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.5e-43 177.9 92 90.2
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 6.0e-43 177.2 94 90.4
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 7.8e-43 176.8 94 91.5
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 7.8e-43 176.8 94 90.4
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 1.0e-42 176.4 94 90.4
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 1.0e-42 176.4 94 90.4
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 1.0e-42 176.4 94 90.4
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 1.0e-42 176.4 94 90.4
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.3e-42 176.0 94 90.4
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 3.0e-42 174.9 94 90.4
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 5.1e-42 174.1 94 89.4
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.1e-41 172.9 94 91.5
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 1.6e-40 169.1 94 88.3
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 1.6e-40 169.1 81 98.8
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.8e-40 168.3 94 87.2
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 4.8e-40 167.5 94 88.3
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 6.2e-40 167.2 94 85.1
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 8.1e-40 166.8 82 95.1
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 1.8e-39 165.6 83 94.0
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.4e-39 165.2 94 86.2
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 6.9e-39 163.7 94 87.2
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 1.5e-38 162.5 82 93.9
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 2.6e-38 161.8 84 89.3
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 3.4e-38 161.4 83 91.6
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 9.9e-38 159.8 81 93.8
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 9.9e-38 159.8 94 85.1
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 1.3e-37 159.5 94 87.2
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.2e-37 158.7 81 93.8
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 6.4e-37 157.1 82 86.6
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 4.2e-36 154.5 77 93.5
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 5.4e-36 154.1 79 89.9
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 5.4e-36 154.1 84 85.7
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 6.0e-35 150.6 94 77.7
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 8.7e-34 146.7 74 93.2
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 8.7e-34 146.7 79 86.1
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 3.3e-33 144.8 79 87.3
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 5.6e-33 144.1 72 94.4
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 9.6e-33 143.3 79 87.3
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 1.1e-31 139.8 72 90.3
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.4e-31 138.7 74 87.8
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 3.1e-31 138.3 82 81.7
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 4.0e-31 137.9 94 76.6
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 2.0e-30 135.6 94 73.4
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 2.0e-30 135.6 69 92.8
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 2.0e-30 135.6 69 92.8
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 3.8e-29 131.3 86 72.1
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 3.2e-28 128.3 63 96.8
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 2.7e-27 125.2 66 92.4
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 6.0e-27 124.0 67 89.6
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 1.0e-26 123.2 73 82.2
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.0e-26 123.2 75 80.0
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.0e-26 123.2 75 80.0
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.0e-26 123.2 75 80.0
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 6.7e-26 120.6 63 90.5
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 9.6e-25 116.7 61 90.2
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 2.1e-24 115.5 83 69.9
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 3.7e-24 114.8 75 72.0
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 1.2e-22 109.8 53 94.3
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.5e-22 109.4 58 91.4
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 2.0e-22 109.0 62 85.5
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 2.9e-21 105.1 59 84.7
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 4.9e-21 104.4 62 85.5
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 3.5e-19 98.2 52 86.5
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 4.6e-19 97.8 49 93.9
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 7.9e-19 97.1 56 83.9
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 1.8e-18 95.9 50 88.0
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 1.8e-18 95.9 82 64.6
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 6.7e-18 94.0 44 95.5
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 8.7e-18 93.6 44 100.0
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 3.3e-17 91.7 44 93.2
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 3.3e-17 91.7 61 75.4
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 7.4e-17 90.5 77 63.6
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 6.3e-16 87.4 70 65.7
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 6.3e-16 87.4 43 90.7
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 8.2e-16 87.0 46 87.0
BraSC103t45440Z Brassica rapa HOM05D000540 ORTHO05D008899 3.1e-15 85.1 41 97.6
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 9.0e-15 83.6 84 54.8
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.3e-13 79.7 37 94.6
EL10Ac9g22727 Beta vulgaris HOM05D000540 ORTHO05D008899 2.5e-12 75.5 41 87.8
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 3.2e-12 75.1 44 81.8
HanXRQChr00c0533g0575581 Helianthus annuus HOM05D000540 ORTHO05D008899 2.7e-11 72.0 35 97.1
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 3.6e-11 71.6 37 89.2
CAN.G1690.3 Capsicum annuum HOM05D000540 ORTHO05D000681 3.9e-10 68.2 32 93.8
SMO086G0037 Selaginella moellendorffii HOM05D000540 ORTHO05D008899 4.3e-09 64.7 89 41.6
Migut.K00974 Erythranthe guttata HOM05D000540 ORTHO05D000681 5.7e-09 64.3 30 93.3
Cc06_g21660 Coffea canephora HOM05D000540 ORTHO05D008899 2.6e-06 55.5 40 57.5


User provided reference genes

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