Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 4.3e-242 841.6 706 100.0
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 1.2e-180 637.5 698 83.5
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 1.6e-180 637.1 699 85.1
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 5.9e-175 618.6 698 82.7
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 1.3e-174 617.5 698 86.4
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 1.8e-155 553.9 700 74.1
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 5.0e-134 482.6 698 74.2
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 3.5e-95 353.6 431 45.9
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 8.7e-94 349.0 431 54.8
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 7.3e-93 345.9 656 65.9
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 2.2e-89 334.3 387 58.7
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 3.8e-89 333.6 340 64.7
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 3.9e-86 323.6 370 59.7
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 6.6e-86 322.8 632 67.4
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 1.8e-83 314.7 353 60.1
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.8e-83 314.7 353 60.1
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 1.5e-82 311.6 476 49.4
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 9.9e-82 308.9 373 56.6
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 9.3e-80 302.4 450 61.6
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 1.8e-78 298.1 325 62.5
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 1.1e-77 295.4 456 57.9
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 1.5e-77 295.0 325 60.9
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 1.5e-77 295.0 325 60.9
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 2.5e-77 294.3 325 61.5
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 4.3e-77 293.5 325 60.9
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 7.4e-77 292.7 278 69.4
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 2.1e-76 291.2 265 71.7
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 6.2e-76 289.7 387 54.3
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 8.1e-76 289.3 371 56.3
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 4.0e-75 287.0 324 59.6
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 9.0e-75 285.8 479 52.2
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 2.0e-74 284.6 320 61.2
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 4.9e-73 280.0 323 60.1
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 1.9e-72 278.1 438 60.0
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 1.9e-72 278.1 480 52.1
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 5.5e-72 276.6 325 59.7
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 7.1e-72 276.2 482 56.0
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 2.1e-71 274.6 450 52.4
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 2.7e-71 274.2 495 50.7
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 1.0e-70 272.3 292 63.7
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 3.0e-70 270.8 455 55.6
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 3.9e-70 270.4 411 62.8
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 1.1e-69 268.9 262 71.0
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 3.3e-69 267.3 431 59.9
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 9.6e-69 265.8 430 61.2
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 1.3e-68 265.4 429 55.2
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 2.1e-68 264.6 621 55.9
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 2.4e-67 261.2 473 56.9
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 3.1e-67 260.8 435 50.3
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 1.2e-66 258.8 262 66.8
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 1.5e-66 258.5 311 59.8
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 1.5e-66 258.5 305 61.0
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 5.9e-66 256.5 429 48.3
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 5.9e-66 256.5 285 63.2
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 5.0e-65 253.4 615 55.4
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 8.4e-65 252.7 260 67.3
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 8.4e-65 252.7 416 41.3
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.4e-64 251.9 260 67.3
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.4e-64 251.9 260 67.3
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 4.2e-64 250.4 253 68.0
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 9.3e-64 249.2 445 57.1
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 9.3e-64 249.2 475 54.5
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 9.3e-64 249.2 439 45.8
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 2.1e-63 248.1 387 49.9
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 1.8e-62 245.0 293 60.4
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 1.8e-62 245.0 305 61.6
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 2.3e-62 244.6 261 65.5
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 3.9e-62 243.8 256 66.0
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 6.7e-62 243.0 313 59.7
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 1.1e-61 242.3 256 68.0
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 3.3e-61 240.7 314 60.5
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 1.3e-60 238.8 302 60.9
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 2.2e-60 238.0 302 61.3
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 1.1e-59 235.7 286 60.1
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 6.9e-59 233.0 320 54.1
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 1.5e-58 231.9 293 58.4
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 8.5e-57 226.1 394 48.7
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 3.2e-56 224.2 445 55.1
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 1.0e-54 219.2 606 60.1
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 1.8e-54 218.4 263 62.4
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 1.7e-52 211.8 415 36.6
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 1.8e-51 208.4 415 34.0
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 1.2e-50 205.7 484 42.1
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 3.4e-50 204.1 387 49.6
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 3.0e-46 191.0 388 46.6
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 9.7e-45 186.0 230 47.8
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 1.4e-43 182.2 392 55.9
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 2.4e-43 181.4 296 50.0
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 1.6e-42 178.7 216 67.1
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 1.6e-42 178.7 320 50.0
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 1.6e-42 178.7 398 55.3
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 2.0e-42 178.3 146 58.9
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 2.6e-42 177.9 282 53.2
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 5.9e-42 176.8 231 61.0
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 2.9e-41 174.5 235 44.7
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 3.8e-41 174.1 222 62.6
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 5.0e-41 173.7 226 62.8
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 1.1e-40 172.6 392 55.1
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 7.2e-40 169.9 229 62.0
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 2.4e-35 154.8 282 50.0
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 7.0e-35 153.3 282 50.0
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 2.7e-34 151.4 137 54.7
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 2.5e-32 144.8 238 36.6
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 6.1e-23 113.6 202 36.1
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 1.5e-21 109.0 151 45.7
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 7.5e-21 106.7 227 39.6
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 1.3e-20 105.9 317 29.3
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 5.6e-16 90.5 201 29.9
Lj5P156T63 Lonicera japonica HOM05D006707 ORTHO05D008243 1.6e-15 89.0 51 84.3
RhsimUnG0220500 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.8e-15 88.2 51 78.4
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 1.4e-14 85.9 60 68.3
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 1.4e-14 85.9 60 68.3
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 1.4e-14 85.9 64 64.1
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 1.3e-09 69.3 43 72.1
BraA05t22010Z Brassica rapa HOM05D006707 ORTHO05D008243 1.7e-09 68.9 51 64.7
MELO3C017354.2 Cucumis melo HOM05D006707 ORTHO05D008243 8.6e-09 66.6 41 75.6
Manes.06G007451 Manihot esculenta HOM05D006707 ORTHO05D008243 8.6e-09 66.6 41 78.0
CAN.G89.23 Capsicum annuum HOM05D026951 ORTHO05D115530 9.5e-08 63.2 67 50.7
QL10p028425 Quercus lobata HOM05D006707 ORTHO05D008243 1.4e-06 59.3 39 76.9
BcaB04g17239 Brassica carinata HOM05D006707 ORTHO05D008243 4.0e-06 57.8 59 50.8


User provided reference genes

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