Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1114.2 Capsicum annuum HOM05D006866 ORTHO05D008689 9.3e-99 363.6 193 100.0
CAN.G27.8 Capsicum annuum HOM05D006866 ORTHO05D008689 3.3e-27 125.9 84 77.4
CSS0019706 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 1.5e-19 100.5 138 43.5
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 2.5e-19 99.8 73 63.0
Lalb_Chr02g0143291 Lupinus albus HOM05D006866 ORTHO05D008689 4.3e-19 99.0 71 60.6
Phvul.007G021100 Phaseolus vulgaris HOM05D006866 ORTHO05D008689 1.1e-17 94.4 71 59.2
ECA232G0121 Erigeron canadensis HOM05D006866 ORTHO05D008689 4.0e-17 92.4 72 59.7
AUR62006935 Chenopodium quinoa HOM05D006866 ORTHO05D008689 2.6e-16 89.7 70 57.1
EL10Ac8g19312 Beta vulgaris HOM05D006866 ORTHO05D008689 9.8e-16 87.8 68 57.4
HanXRQChr09g0258331 Helianthus annuus HOM05D006866 ORTHO05D008689 9.8e-16 87.8 67 58.2
CARHR129270 Cardamine hirsuta HOM05D006866 ORTHO05D008689 1.7e-15 87.0 70 52.9
BraA05t20001Z Brassica rapa HOM05D006866 ORTHO05D008689 2.2e-15 86.7 77 48.1
Thhalv10017758m.g Eutrema salsugineum HOM05D006866 ORTHO05D008689 3.7e-15 85.9 70 52.9
Aa31LG9G16090 Aethionema arabicum HOM05D006866 ORTHO05D008689 8.3e-15 84.7 70 52.9
Sp4g17360 Schrenkiella parvula HOM05D006866 ORTHO05D008689 8.3e-15 84.7 70 52.9
THA.LOC104814359 Tarenaya hassleriana HOM05D006866 ORTHO05D008689 1.1e-14 84.3 70 52.9
Carub.0004s1681 Capsella rubella HOM05D006866 ORTHO05D008689 1.4e-14 84.0 70 50.0
C04p13710 Brassica napus HOM05D006866 ORTHO05D008689 1.9e-14 83.6 70 51.4
BolC4t22960H Brassica oleracea HOM05D006866 ORTHO05D008689 1.9e-14 83.6 70 51.4
AL4G31140 Arabidopsis lyrata HOM05D006866 ORTHO05D008689 3.2e-14 82.8 70 50.0
BcaB02g09476 Brassica carinata HOM05D006866 ORTHO05D008689 3.2e-14 82.8 70 51.4
Lj2A350T60 Lonicera japonica HOM05D006866 ORTHO05D008689 4.1e-14 82.4 99 38.4
A05p10610 Brassica napus HOM05D006866 ORTHO05D008689 9.2e-14 81.3 70 50.0
Ca_25672_v3 Cicer arietinum L. HOM05D006866 ORTHO05D008689 2.7e-13 79.7 71 52.1
CAN.G149.30 Capsicum annuum HOM05D006866 ORTHO05D008689 3.5e-13 79.3 41 90.2
Haze_06061 Corylus avellana HOM05D006866 ORTHO05D008689 3.5e-13 79.3 72 52.8
Solyc02g068760.4 Solanum lycopersicum HOM05D006866 ORTHO05D008689 7.8e-13 78.2 41 87.8
Sopen02g017930 Solanum pennellii HOM05D006866 ORTHO05D008689 7.8e-13 78.2 41 87.8
Nitab4.5_0001288g0160 Nicotiana tabacum HOM05D006866 ORTHO05D008689 1.0e-12 77.8 41 87.8
Nitab4.5_0007533g0010 Nicotiana tabacum HOM05D006866 ORTHO05D008689 1.0e-12 77.8 41 87.8
AT2G35130 Arabidopsis thaliana HOM05D006866 ORTHO05D008689 1.3e-12 77.4 70 47.1
Peaxi162Scf00149g00318 Petunia axillaris HOM05D006866 ORTHO05D008689 1.3e-12 77.4 41 85.4
PGSC0003DMG400010422 Solanum tuberosum HOM05D006866 ORTHO05D008689 3.0e-12 76.3 41 85.4
AUR62006933 Chenopodium quinoa HOM05D006866 ORTHO05D008689 3.3e-11 72.8 49 61.2
Cpa.g.sc135.7 Carica papaya HOM05D006866 ORTHO05D008689 2.8e-10 69.7 54 59.3
TAR626G0654 Trochodendron aralioides HOM05D006866 ORTHO05D008689 3.6e-10 69.3 40 75.0
Duzib160G0228 Durio zibethinus HOM05D006866 ORTHO05D008689 4.7e-10 68.9 41 75.6
COL.COLO4_30996 Corchorus olitorius HOM05D006866 ORTHO05D008689 6.2e-10 68.6 41 73.2
DCAR_001319 Daucus carota HOM05D006866 ORTHO05D008689 6.2e-10 68.6 40 72.5
FvH4_3g12360 Fragaria vesca HOM05D006866 ORTHO05D008689 8.1e-10 68.2 42 69.0
FAN21G0631 Fragaria x ananassa HOM05D006866 ORTHO05D008689 8.1e-10 68.2 42 69.0
Haze_06053 Corylus avellana HOM05D006866 ORTHO05D008689 1.1e-09 67.8 64 51.6
Oeu060351.1 Olea europaea HOM05D006866 ORTHO05D008689 1.4e-09 67.4 42 69.0
GSVIVG01012065001 Vitis vinifera HOM05D006866 ORTHO05D008689 1.4e-09 67.4 39 76.9
Cfa002018 Carpinus fangiana HOM05D000082 ORTHO05D000038 1.8e-09 67.0 64 53.1
Gohir.A10G044500 Gossypium hirsutum HOM05D006866 ORTHO05D008689 1.8e-09 67.0 41 70.7
Nn7g38175 Nelumbo nucifera HOM05D006866 ORTHO05D008689 1.8e-09 67.0 41 73.2
Lsat_1_v5_gn_8_117320 Lactuca sativa HOM05D006866 ORTHO05D008689 3.1e-09 66.2 41 68.3
MD10G1231700 Malus domestica HOM05D006866 ORTHO05D008689 3.1e-09 66.2 41 70.7
Potri.012G123600 Populus trichocarpa HOM05D006866 ORTHO05D008689 3.1e-09 66.2 41 70.7
CANSAT35G0964 Cannabis sativa HOM05D006866 ORTHO05D008689 4.0e-09 65.9 41 70.7
Lj5g0008795 Lotus japonicus HOM05D006866 ORTHO05D008689 4.0e-09 65.9 43 65.1
CSS0001165 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 5.2e-09 65.5 40 70.0
CSS0037136 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 5.2e-09 65.5 40 70.0
Cc09_g06040 Coffea canephora HOM05D006866 ORTHO05D008689 5.2e-09 65.5 40 67.5
Migut.M01983 Erythranthe guttata HOM05D006866 ORTHO05D008689 5.2e-09 65.5 42 61.9
FAN25G0624 Fragaria x ananassa HOM05D006866 ORTHO05D008689 5.2e-09 65.5 41 68.3
Prupe.4G112600 Prunus persica HOM05D006866 ORTHO05D008689 5.2e-09 65.5 41 68.3
Gohir.D10G045700 Gossypium hirsutum HOM05D006866 ORTHO05D008689 6.8e-09 65.1 41 70.7
Gorai.011G048600 Gossypium raimondii HOM05D006866 ORTHO05D008689 6.8e-09 65.1 41 70.7
RcHm_v2.0_Chr5g0020151 Rosa chinensis HOM05D006866 ORTHO05D008689 6.8e-09 65.1 41 68.3
Thecc.06G143300 Theobroma cacao HOM05D006866 ORTHO05D008689 6.8e-09 65.1 41 65.9
TWI38G1826 Tripterygium wilfordii HOM05D006866 ORTHO05D008689 6.8e-09 65.1 41 70.7
Zm00001eb233080 Zea mays HOM05D006866 ORTHO05D008689 8.9e-09 64.7 42 61.9
Ciclev10015335m.g Citrus clementina HOM05D006866 ORTHO05D008689 1.2e-08 64.3 39 74.4
Eucgr.D00981 Eucalyptus grandis HOM05D006866 ORTHO05D008689 1.2e-08 64.3 39 71.8
Glyma.20G109800 Glycine max HOM05D006866 ORTHO05D008689 1.5e-08 63.9 41 68.3
Sabra12G0093100 Salix brachista HOM05D006866 ORTHO05D008689 1.5e-08 63.9 41 68.3
Sabra12G0093800 Salix brachista HOM05D006866 ORTHO05D008689 1.5e-08 63.9 41 68.3
Actinidia22399 Actinidia chinensis HOM05D006866 ORTHO05D008689 2.0e-08 63.5 39 66.7
EL10Ac4g09707 Beta vulgaris HOM05D006866 ORTHO05D008689 3.4e-08 62.8 43 60.5
Manes.13G080558 Manihot esculenta HOM05D006866 ORTHO05D008689 3.4e-08 62.8 43 67.4
vmacro03523 Vaccinium macrocarpon HOM05D006866 ORTHO05D008689 3.4e-08 62.8 40 67.5
Sabra12G0093000 Salix brachista HOM05D000009 ORTHO05D000008 4.4e-08 62.4 44 61.4
arahy.Tifrunner.gnm1.ann1.0F554D Arachis hypogaea HOM05D006866 ORTHO05D008689 5.8e-08 62.0 41 65.9
arahy.Tifrunner.gnm1.ann1.X32MFV Arachis hypogaea HOM05D006866 ORTHO05D008689 5.8e-08 62.0 41 65.9
Dinv01379 Davidia involucrata HOM05D006866 ORTHO05D008689 5.8e-08 62.0 39 66.7
Cfa000706 Carpinus fangiana HOM05D006866 ORTHO05D008689 7.6e-08 61.6 41 65.9
CiPaw.10G064300 Carya illinoinensis HOM05D006866 ORTHO05D008689 7.6e-08 61.6 39 66.7
TPR.G2448 Trifolium pratense HOM05D006866 ORTHO05D008689 7.6e-08 61.6 43 62.8
QL11p016582 Quercus lobata HOM05D006866 ORTHO05D008689 9.9e-08 61.2 41 63.4
VMungo0720G0148 Vigna mungo HOM05D006866 ORTHO05D008689 9.9e-08 61.2 41 63.4
PSO675G2302 Papaver somniferum HOM05D006866 ORTHO05D008689 1.3e-07 60.8 39 66.7
CDE01G0264 Ceratophyllum demersum HOM05D006866 ORTHO05D008689 1.7e-07 60.5 42 66.7
PSO541G3299 Papaver somniferum HOM05D006866 ORTHO05D008689 3.7e-07 59.3 39 66.7
ATR0763G194 Amborella trichopoda HOM05D006866 ORTHO05D008689 4.9e-07 58.9 41 61.0
RhsimUnG0235100 Rhododendron simsii HOM05D006866 ORTHO05D008689 6.4e-07 58.5 39 66.7
Aqoxy1G01457 Aquilegia oxysepala HOM05D006866 ORTHO05D008689 8.4e-07 58.2 41 63.4
Medtr1g112240 Medicago truncatula HOM05D006866 ORTHO05D008689 8.4e-07 58.2 41 61.0
MBI18_g11481_MAGBIO Magnolia biondii HOM05D006866 ORTHO05D008689 1.1e-06 57.8 41 63.4
TPR.G2424 Trifolium pratense HOM05D006866 ORTHO05D008689 1.4e-06 57.4 41 61.0
Psat6g231320 Pisum sativum HOM05D006866 ORTHO05D008689 2.4e-06 56.6 42 57.1
ClCG01G009530 Citrullus lanatus HOM05D006866 ORTHO05D008689 9.2e-06 54.7 41 56.1
MELO3C021744.2 Cucumis melo HOM05D006866 ORTHO05D008689 9.2e-06 54.7 41 56.1
CsaV3_1G046260 Cucumis sativus L. HOM05D006866 ORTHO05D008689 9.2e-06 54.7 41 56.1
Nitab4.5_0007634g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 9.2e-06 54.7 93 38.7


User provided reference genes

Program Settings