Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 7.9e-310 1066.2 528 100.0
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 9.7e-308 1059.3 528 99.2
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 1.4e-298 1028.9 527 97.5
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 2.4e-298 1028.1 525 97.1
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 3.1e-298 1027.7 527 97.2
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 2.5e-295 1018.1 528 96.4
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 2.5e-295 1018.1 528 96.4
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 2.5e-295 1018.1 528 96.4
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 1.2e-294 1015.8 526 96.6
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 2.1e-294 1015.0 524 96.6
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 4.7e-294 1013.8 528 95.8
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 4.7e-294 1013.8 528 95.8
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 4.7e-294 1013.8 528 95.8
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 4.7e-294 1013.8 528 95.8
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 4.7e-294 1013.8 528 95.8
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 8.8e-293 1009.6 524 95.8
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 1.7e-291 1005.4 528 95.6
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 3.7e-291 1004.2 528 95.6
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 3.7e-291 1004.2 528 95.6
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.5e-289 997.7 499 99.0
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.5e-289 997.7 499 99.0
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.5e-289 997.7 499 99.0
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 4.5e-289 997.3 528 95.1
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 5.4e-282 973.8 527 92.8
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 1.1e-279 966.1 499 96.4
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.2e-276 956.1 499 96.0
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 3.4e-276 954.5 499 95.4
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 8.9e-269 929.9 527 89.9
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 3.4e-268 927.9 527 89.8
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 6.0e-265 917.1 457 99.3
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 3.0e-264 914.8 525 88.0
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 5.0e-264 914.1 516 90.9
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 1.9e-263 912.1 499 93.0
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 8.1e-262 906.7 528 86.6
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.8e-251 871.3 508 88.8
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 2.4e-250 868.6 503 89.3
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.1e-247 859.8 447 95.3
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 3.3e-247 858.2 489 90.0
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 7.6e-244 847.0 498 87.1
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 3.2e-242 841.6 457 93.2
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 6.2e-238 827.4 522 83.3
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 1.8e-232 809.3 421 96.7
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 6.7e-232 807.4 420 96.7
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 1.9e-226 789.3 452 89.6
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 1.8e-221 772.7 489 83.2
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 1.5e-220 769.6 455 88.1
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 3.9e-216 755.0 392 96.2
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 5.5e-210 734.6 462 82.7
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.2e-196 690.3 457 79.4
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 1.1e-194 683.7 355 95.8
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 7.5e-183 644.4 461 75.7
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 6.8e-176 621.3 318 95.9
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 6.1e-169 598.2 439 73.6
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.2e-167 594.0 355 84.5
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 2.7e-164 582.8 297 99.0
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.5e-162 577.0 522 62.1
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 7.8e-156 554.7 284 95.8
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 3.0e-155 552.7 317 87.7
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 5.2e-152 542.0 284 94.4
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 7.8e-148 528.1 365 76.2
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 3.4e-143 512.7 254 98.8
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 6.6e-139 498.4 254 96.9
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 6.8e-136 488.4 659 47.3
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.9e-134 483.0 250 94.8
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 2.9e-134 483.0 254 94.5
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 9.2e-133 478.0 265 92.1
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 2.0e-127 460.3 274 84.7
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 2.0e-127 460.3 274 84.7
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 2.0e-127 460.3 242 95.9
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 1.5e-119 434.1 527 51.2
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 2.4e-117 426.8 307 73.9
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 7.9e-116 421.8 237 90.7
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 1.0e-115 421.4 227 94.7
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 7.6e-111 405.2 222 94.1
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.2e-110 403.7 312 72.4
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 5.5e-109 399.1 235 85.1
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.3e-105 387.9 355 62.5
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 1.6e-105 387.5 432 51.6
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 8.4e-102 375.2 189 96.8
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 8.4e-102 375.2 189 96.8
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 8.4e-102 375.2 189 96.8
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 2.1e-100 370.5 204 92.6
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 7.9e-100 368.6 189 94.7
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 2.3e-99 367.1 189 94.7
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 4.5e-95 352.8 262 77.5
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 2.2e-94 350.5 427 53.2
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 9.4e-93 345.1 328 58.5
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 8.2e-89 332.0 504 43.3
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 8.2e-89 332.0 321 58.6
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 7.9e-84 315.5 197 80.7
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 7.4e-82 308.9 161 96.3
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 2.9e-78 297.0 373 41.8
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.1e-76 289.3 159 91.8
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 7.0e-72 275.8 434 45.4
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 3.6e-60 236.9 244 56.6
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 1.5e-58 231.5 183 67.8
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 2.0e-58 231.1 235 59.6
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 9.8e-58 228.8 118 97.5
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 1.3e-57 228.4 128 87.5
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 5.4e-56 223.0 134 76.1
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 2.0e-55 221.1 283 48.8
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 1.0e-54 218.8 204 61.8
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 2.3e-54 217.6 175 66.3
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 5.0e-54 216.5 138 82.6
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 7.2e-53 212.6 148 77.7
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 1.6e-52 211.5 137 81.8
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 1.5e-50 204.9 105 92.4
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 7.5e-50 202.6 95 100.0
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 1.4e-48 198.4 94 98.9
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.8e-48 198.0 105 88.6
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.8e-48 198.0 105 88.6
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 1.8e-48 198.0 227 52.0
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 2.3e-46 191.0 109 83.5
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 2.9e-46 190.7 100 93.0
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 8.6e-46 189.1 153 68.6
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 2.1e-44 184.5 91 96.7
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 1.2e-42 178.7 165 61.2
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 4.4e-42 176.8 91 92.3
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 6.4e-41 172.9 99 84.8
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 8.3e-41 172.6 197 51.3
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 9.2e-40 169.1 95 91.6
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 2.7e-39 167.5 156 60.9
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 3.5e-39 167.2 91 94.5
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.5e-39 167.2 104 77.9
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 3.3e-37 160.6 81 93.8
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 6.2e-36 156.4 89 84.3
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 8.0e-36 156.0 85 88.2
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 8.9e-35 152.5 92 81.5
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 2.6e-34 151.0 163 58.9
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 3.7e-33 147.1 127 63.8
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 1.9e-32 144.8 106 71.7
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 7.8e-31 139.4 112 69.6
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 9.5e-29 132.5 129 60.5
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 1.2e-28 132.1 80 80.0
Lalb_Chr00c21g0405811 Lupinus albus HOM05D004537 ORTHO05D005492 4.1e-24 117.1 56 98.2
Nitab4.5_0001234g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.5e-23 114.0 92 73.9
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 1.0e-22 112.5 70 80.0
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 6.6e-22 109.8 108 53.7
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 2.5e-21 107.8 64 81.2
Solyc08g029290.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.3e-21 107.5 76 71.1
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 5.6e-21 106.7 53 90.6
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 3.6e-20 104.0 68 79.4
C04p32420 Brassica napus HOM05D004537 ORTHO05D005492 2.6e-18 97.8 70 74.3
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 2.2e-17 94.7 47 97.9
EL10Ac5g12760 Beta vulgaris HOM05D004537 ORTHO05D005492 6.4e-17 93.2 46 93.5
TPR.G39033 Trifolium pratense HOM05D004537 ORTHO05D005492 1.2e-15 89.0 50 86.0
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 5.1e-14 83.6 50 80.0
Nitab4.5_0002322g0200 Nicotiana tabacum HOM05D004537 ORTHO05D015169 1.5e-13 82.0 41 95.1
Nitab4.5_0001127g0350 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.6e-13 80.1 42 90.5
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 1.3e-12 79.0 48 83.3
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 3.1e-11 74.3 50 78.0
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.1e-11 74.3 36 91.7
ATR1125G006 Amborella trichopoda HOM05D004537 ORTHO05D005492 4.4e-10 70.5 33 93.9
BolC4t24790H Brassica oleracea HOM05D004537 ORTHO05D005492 4.4e-10 70.5 35 91.4
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 4.4e-10 70.5 46 76.1
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 1.3e-09 68.9 34 94.1
SHI30018 Sapria himalayana HOM05D004537 ORTHO05D005492 2.9e-09 67.8 56 66.1
Nitab4.5_0003938g0030 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.1e-08 65.9 50 66.0


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