Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 9.0e-273 943.0 469 100.0
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 6.9e-257 890.2 469 95.1
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 1.4e-254 882.5 469 94.0
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 3.2e-254 881.3 469 93.8
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 4.7e-245 850.9 465 90.5
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 3.9e-244 847.8 469 90.2
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 3.1e-241 838.2 465 89.0
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 3.9e-207 724.9 457 76.4
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 6.6e-207 724.2 457 76.6
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 2.5e-206 722.2 455 76.9
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 1.2e-205 719.9 457 75.3
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 1.8e-204 716.1 457 74.0
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 1.8e-204 716.1 452 76.1
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 2.3e-204 715.7 464 75.4
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 2.3e-204 715.7 452 76.5
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 6.8e-204 714.1 466 74.5
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 3.4e-203 711.8 452 74.3
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 3.4e-203 711.8 452 74.3
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 5.8e-203 711.1 458 76.2
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 7.5e-203 710.7 453 74.4
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 2.2e-202 709.1 423 78.7
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 2.9e-202 708.8 464 73.1
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 4.9e-202 708.0 465 72.5
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 6.4e-202 707.6 463 74.1
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 7.0e-201 704.1 512 69.5
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 9.2e-201 703.7 456 75.4
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 1.2e-200 703.4 451 75.8
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 1.6e-200 703.0 457 73.7
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.1e-200 702.6 453 73.5
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 4.6e-200 701.4 469 72.9
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 6.0e-200 701.0 462 74.5
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 1.7e-199 699.5 458 72.7
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 1.7e-199 699.5 462 72.3
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 1.7e-199 699.5 452 73.5
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 2.3e-199 699.1 460 74.8
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 3.9e-199 698.4 448 75.9
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 6.6e-199 697.6 458 72.9
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 8.6e-199 697.2 471 72.6
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 8.6e-199 697.2 480 71.0
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 1.1e-198 696.8 458 71.8
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 1.9e-198 696.0 462 74.0
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.5e-198 695.7 482 70.1
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 3.3e-198 695.3 438 75.8
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 4.3e-198 694.9 464 73.3
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 7.3e-198 694.1 456 73.7
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 1.6e-197 693.0 448 74.1
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 2.1e-197 692.6 543 64.8
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 2.8e-197 692.2 455 73.4
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 8.1e-197 690.6 448 74.6
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 8.1e-197 690.6 457 73.1
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.1e-196 690.3 458 72.5
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 1.4e-196 689.9 457 72.9
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 3.1e-196 688.7 478 71.5
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 4.0e-196 688.3 454 72.7
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 5.2e-196 688.0 455 73.2
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 6.8e-196 687.6 448 74.3
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 8.9e-196 687.2 464 72.0
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 1.2e-195 686.8 422 77.0
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 3.4e-195 685.3 453 73.3
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 4.4e-195 684.9 491 68.8
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 7.5e-195 684.1 462 70.8
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 9.9e-195 683.7 463 70.0
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 2.2e-194 682.6 448 73.7
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 2.9e-194 682.2 458 71.4
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 4.9e-194 681.4 451 71.6
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 4.9e-194 681.4 457 72.9
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 6.4e-194 681.0 451 73.4
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.1e-193 680.2 458 70.7
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 1.1e-193 680.2 449 72.4
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.9e-193 679.5 499 66.7
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 2.4e-193 679.1 458 71.0
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 7.1e-193 677.6 457 70.5
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 4.6e-192 674.9 486 68.1
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 6.0e-192 674.5 458 70.7
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 6.0e-192 674.5 456 69.7
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 7.8e-192 674.1 458 71.6
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 7.8e-192 674.1 457 70.2
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 2.3e-191 672.5 449 71.7
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 3.9e-191 671.8 477 69.6
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 5.1e-191 671.4 441 71.7
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 6.6e-191 671.0 460 69.6
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 6.6e-191 671.0 449 71.5
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 2.8e-189 665.6 450 70.7
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.8e-189 665.6 467 69.4
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 6.2e-189 664.5 450 70.4
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 4.0e-188 661.8 451 70.5
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 6.8e-188 661.0 475 67.2
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 8.9e-188 660.6 444 72.3
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 1.2e-187 660.2 606 56.9
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.4e-187 658.7 458 69.2
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 4.2e-185 651.7 438 71.2
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 1.2e-184 650.2 458 69.0
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 1.3e-183 646.7 456 68.0
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 4.3e-182 641.7 457 68.3
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 1.5e-179 633.3 462 68.2
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 2.1e-176 622.9 422 70.9
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 3.9e-175 618.6 451 65.4
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 1.4e-169 600.1 376 76.9
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 1.3e-165 587.0 373 74.8
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 1.6e-165 586.6 358 79.1
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 1.2e-163 580.5 381 73.5
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 3.2e-161 572.4 357 78.2
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 3.0e-151 539.3 437 61.3
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 5.1e-151 538.5 451 59.9
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 8.7e-151 537.7 431 62.2
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 1.5e-150 537.0 479 59.9
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 2.5e-150 536.2 456 59.0
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 1.3e-149 533.9 286 91.6
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 3.7e-149 532.3 397 66.2
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 5.5e-145 518.5 458 59.4
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 3.9e-135 485.7 444 56.3
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 1.2e-128 464.2 281 78.3
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 3.0e-127 459.5 409 59.4
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 9.1e-124 448.0 460 52.0
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 3.1e-116 422.9 276 71.7
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 1.0e-106 391.3 253 70.8
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 5.2e-103 379.0 494 44.7
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 2.6e-102 376.7 252 71.8
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 2.8e-96 356.7 536 40.9
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 6.1e-96 355.5 430 45.1
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 5.2e-95 352.4 248 70.6
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 1.9e-84 317.4 464 38.4
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 5.6e-81 305.8 242 64.0
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 5.6e-81 305.8 248 63.3
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 3.9e-74 283.1 242 59.5
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 3.9e-66 256.5 166 70.5
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 4.8e-64 249.6 195 65.1
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.9e-61 240.4 212 59.0
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 2.4e-60 237.3 184 63.0
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 4.6e-59 233.0 242 52.9
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 6.4e-53 212.6 155 67.1
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.9e-52 211.1 119 90.8
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.0e-50 205.3 162 63.0
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 2.1e-40 171.0 115 67.0
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 4.8e-40 169.9 99 81.8
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 8.2e-40 169.1 103 81.6
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 3.1e-39 167.2 112 73.2
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 5.3e-39 166.4 110 70.9
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 1.0e-37 162.2 116 68.1
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 5.5e-36 156.4 107 72.0
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 5.7e-33 146.4 350 30.9
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 3.7e-32 143.7 91 74.7
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 2.4e-31 141.0 99 65.7
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 2.9e-21 107.5 71 76.1
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 2.9e-21 107.5 71 76.1
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 2.9e-21 107.5 71 76.1
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 1.9e-20 104.8 103 53.4
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 4.4e-17 93.6 65 66.2
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 8.2e-16 89.4 56 83.9
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 5.3e-15 86.7 65 63.1
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 5.3e-15 86.7 97 45.4
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 4.5e-14 83.6 44 86.4
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 1.7e-13 81.6 306 28.8
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 3.6e-11 73.9 68 57.4
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 4.7e-11 73.6 42 78.6
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 7.5e-09 66.2 39 82.1
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 7.5e-09 66.2 39 82.1
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 2.2e-08 64.7 39 79.5
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 1.8e-07 61.6 267 27.7
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 1.8e-07 61.6 270 28.5
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 1.8e-07 61.6 267 27.7
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 1.8e-07 61.6 267 27.7
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 1.8e-07 61.6 270 28.1
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 2.4e-07 61.2 138 37.7
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 9.1e-07 59.3 263 28.1
MD02G1220900 Malus domestica HOM05D004762 ORTHO05D005972 1.2e-06 58.9 41 65.9
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 1.2e-06 58.9 299 25.4
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 1.6e-06 58.5 231 28.1
GSVIVG01022727001 Vitis vinifera HOM05D004762 ORTHO05D005972 1.6e-06 58.5 51 56.9
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 2.0e-06 58.2 300 26.3
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 2.7e-06 57.8 290 27.6
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 2.7e-06 57.8 232 28.9
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 3.5e-06 57.4 264 26.9
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 3.5e-06 57.4 232 29.7
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 4.5e-06 57.0 156 32.1
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 4.5e-06 57.0 299 26.4
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 4.5e-06 57.0 154 33.8
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 5.9e-06 56.6 178 30.3


User provided reference genes

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