Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 2.0e-149 532.3 258 100.0
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 2.6e-141 505.4 258 93.8
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 4.5e-141 504.6 258 93.4
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 2.7e-138 495.4 253 93.7
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 1.8e-137 492.7 253 92.9
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 7.2e-131 470.7 254 88.6
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 2.3e-129 465.7 254 85.8
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 3.0e-129 465.3 254 86.6
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 1.5e-128 463.0 254 86.2
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 1.5e-128 463.0 254 85.8
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 4.4e-128 461.5 254 85.8
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 4.4e-128 461.5 254 85.4
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 7.5e-128 460.7 254 84.6
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 1.3e-127 459.9 254 85.0
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 3.7e-127 458.4 254 85.4
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 4.8e-127 458.0 254 84.3
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 1.4e-126 456.4 254 85.0
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 2.4e-126 455.7 254 84.6
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 4.1e-126 454.9 254 85.0
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 7.0e-126 454.1 255 84.3
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 9.1e-126 453.8 254 85.4
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 1.2e-125 453.4 254 83.9
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 1.6e-125 453.0 255 83.9
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 2.7e-125 452.2 254 84.6
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 3.5e-125 451.8 254 84.6
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 4.5e-125 451.4 254 83.9
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 5.9e-125 451.1 254 85.4
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 5.9e-125 451.1 254 83.1
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 7.7e-125 450.7 254 83.5
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 7.7e-125 450.7 254 83.5
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 1.0e-124 450.3 254 84.3
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 1.0e-124 450.3 254 83.9
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.0e-124 450.3 254 83.5
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 2.9e-124 448.7 254 83.5
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.9e-124 448.7 254 83.9
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 2.9e-124 448.7 254 85.0
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 3.8e-124 448.4 254 83.1
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 5.0e-124 448.0 254 83.9
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 6.5e-124 447.6 254 83.1
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 6.5e-124 447.6 254 83.5
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 6.5e-124 447.6 254 83.1
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 8.5e-124 447.2 256 83.6
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 1.1e-123 446.8 254 83.5
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 1.1e-123 446.8 255 83.1
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 1.1e-123 446.8 254 83.1
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 1.1e-123 446.8 254 83.1
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 1.5e-123 446.4 254 83.5
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 1.5e-123 446.4 252 84.1
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 1.5e-123 446.4 255 83.9
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 2.5e-123 445.7 254 83.1
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 2.5e-123 445.7 254 82.7
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 2.5e-123 445.7 254 83.1
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 2.5e-123 445.7 254 83.5
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 2.5e-123 445.7 254 82.3
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 3.2e-123 445.3 254 83.5
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 3.2e-123 445.3 254 82.7
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 5.5e-123 444.5 255 82.7
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 5.5e-123 444.5 254 84.3
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 5.5e-123 444.5 254 85.0
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 9.4e-123 443.7 255 82.4
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 1.2e-122 443.4 254 83.1
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 1.6e-122 443.0 254 83.1
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 2.7e-122 442.2 254 81.9
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 3.6e-122 441.8 255 82.0
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 6.1e-122 441.0 252 82.9
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 6.1e-122 441.0 254 81.9
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 6.1e-122 441.0 255 81.6
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 8.0e-122 440.7 252 82.9
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 8.0e-122 440.7 255 82.0
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 8.0e-122 440.7 254 83.5
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 1.0e-121 440.3 254 81.5
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 1.0e-121 440.3 254 81.1
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 1.0e-121 440.3 254 81.5
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 1.0e-121 440.3 255 82.0
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 1.0e-121 440.3 254 83.1
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 1.4e-121 439.9 252 82.5
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 1.8e-121 439.5 254 82.7
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 3.0e-121 438.7 252 82.5
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 3.0e-121 438.7 252 82.5
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 6.8e-121 437.6 254 82.3
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 8.8e-121 437.2 254 80.7
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 1.2e-120 436.8 255 81.6
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 2.0e-120 436.0 251 82.5
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 2.6e-120 435.6 255 80.8
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 2.6e-120 435.6 254 80.7
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 4.4e-120 434.9 252 82.5
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 4.4e-120 434.9 252 82.1
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 5.7e-120 434.5 254 81.5
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 5.7e-120 434.5 252 82.1
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 7.5e-120 434.1 254 81.9
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 1.3e-119 433.3 254 81.9
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.2e-119 432.6 254 81.9
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 2.8e-119 432.2 251 82.1
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 2.8e-119 432.2 251 82.1
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 2.8e-119 432.2 305 70.5
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 3.7e-119 431.8 254 81.9
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 4.9e-119 431.4 255 80.0
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 4.9e-119 431.4 262 80.5
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 4.9e-119 431.4 255 79.6
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.1e-118 430.3 262 79.8
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 1.8e-118 429.5 255 79.2
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.1e-118 428.3 254 81.1
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 5.4e-118 427.9 252 80.2
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 7.7e-117 424.1 261 79.3
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 7.7e-117 424.1 254 79.9
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 1.5e-115 419.9 282 73.0
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 7.2e-115 417.5 249 77.5
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 9.5e-115 417.2 254 78.3
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 1.8e-113 412.9 242 80.2
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 1.8e-113 412.9 293 71.3
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 6.8e-113 411.0 239 79.5
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 1.2e-112 410.2 240 82.5
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 4.9e-111 404.8 240 81.7
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 9.2e-110 400.6 258 76.0
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 2.1e-106 389.4 221 83.3
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 4.0e-105 385.2 230 78.3
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 9.8e-104 380.6 254 75.6
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 4.9e-103 378.3 237 73.8
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 4.9e-103 378.3 242 73.1
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 6.4e-103 377.9 231 74.5
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.9e-102 376.3 237 74.3
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 3.2e-102 375.6 229 75.1
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 3.9e-100 368.6 259 71.4
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 4.0e-97 358.6 254 69.7
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 4.0e-97 358.6 231 74.0
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 1.5e-96 356.7 318 60.1
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 3.4e-96 355.5 242 69.8
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 1.1e-94 350.5 243 68.3
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.1e-94 350.5 231 73.2
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 1.4e-94 350.1 199 80.9
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 7.3e-91 337.8 240 71.7
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 5.8e-88 328.2 162 95.1
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 6.6e-84 314.7 248 64.9
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 4.7e-82 308.5 248 59.7
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 1.5e-80 303.5 160 88.1
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 4.9e-79 298.5 160 85.6
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 5.4e-78 295.0 225 67.6
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 5.4e-78 295.0 171 84.2
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 1.6e-74 283.5 200 69.5
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 1.8e-73 280.0 162 82.7
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 2.4e-73 279.6 159 82.4
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 4.0e-73 278.9 254 52.8
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 1.2e-61 240.7 118 99.2
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 3.9e-60 235.7 267 50.9
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 7.6e-56 221.5 134 76.9
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 4.9e-55 218.8 116 88.8
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 3.5e-53 212.6 231 46.3
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 5.3e-49 198.7 107 88.8
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 5.5e-46 188.7 120 74.2
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 1.5e-43 180.6 206 46.1
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 7.4e-43 178.3 164 58.5
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 1.6e-42 177.2 100 82.0
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 1.9e-38 163.7 100 80.0
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.5e-35 153.3 89 78.7
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 4.3e-35 152.5 83 81.9
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 7.4e-35 151.8 83 80.7
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 1.7e-34 150.6 83 78.3
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 5.3e-33 145.6 89 75.3
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.2e-32 144.4 89 74.2
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 2.0e-32 143.7 91 79.1
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.5e-32 142.5 75 84.0
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.7e-31 140.6 89 73.0
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 9.4e-30 134.8 81 76.5
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.6e-29 134.0 81 76.5
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 7.9e-29 131.7 84 75.0
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 5.1e-28 129.0 75 77.3
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 5.1e-28 129.0 75 77.3
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 5.1e-28 129.0 75 77.3
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 5.1e-28 129.0 75 77.3
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 6.7e-28 128.6 81 72.8
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.0e-27 127.1 75 76.0
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 6.3e-26 122.1 75 73.3
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.1e-25 119.8 71 77.5
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 1.2e-24 117.9 82 72.0
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.6e-24 117.5 76 72.4
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 2.6e-11 73.6 42 83.3
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 1.3e-10 71.2 55 63.6


User provided reference genes

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