Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 5.1e-96 354.4 173 100.0
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 6.0e-57 224.6 130 85.4
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 2.9e-43 179.1 132 67.4
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 7.7e-36 154.5 113 72.6
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.1e-34 150.6 111 73.0
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 2.5e-34 149.4 114 66.7
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 3.2e-34 149.1 115 66.1
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 4.7e-33 145.2 111 70.3
Nitab4.5_0003498g0100 Nicotiana tabacum HOM05D006287 ORTHO05D008192 2.6e-31 139.4 192 49.0
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 2.0e-23 113.2 129 42.6
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 4.8e-22 108.6 133 42.9
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 8.2e-22 107.8 112 49.1
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 8.5e-19 97.8 125 42.4
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 1.1e-18 97.4 122 41.8
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 1.1e-18 97.4 112 45.5
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 1.5e-18 97.1 99 51.5
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 1.5e-18 97.1 134 38.8
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 2.5e-18 96.3 122 43.4
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 3.2e-18 95.9 126 42.9
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 1.2e-17 94.0 133 36.1
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 4.7e-17 92.0 120 40.0
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 6.1e-17 91.7 77 59.7
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 8.0e-17 91.3 110 44.5
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 1.8e-16 90.1 129 37.2
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 1.8e-16 90.1 112 40.2
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 5.2e-16 88.6 126 36.5
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 1.5e-15 87.0 114 38.6
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 1.5e-15 87.0 114 38.6
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 2.0e-15 86.7 126 36.5
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 3.4e-15 85.9 92 48.9
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 7.5e-15 84.7 116 40.5
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 4.8e-14 82.0 90 38.9
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 6.3e-14 81.6 132 34.8
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.1e-13 80.9 105 39.0
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 1.8e-13 80.1 132 34.8
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.8e-13 80.1 119 37.8
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 2.4e-13 79.7 116 37.1
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 2.4e-13 79.7 116 37.1
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 3.1e-13 79.3 135 34.8
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 3.1e-13 79.3 144 31.2
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 4.1e-13 79.0 123 35.8
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 7.0e-13 78.2 116 36.2
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 7.0e-13 78.2 119 36.1
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 7.0e-13 78.2 109 37.6
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 1.6e-12 77.0 104 34.6
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 2.0e-12 76.6 65 47.7
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 4.5e-12 75.5 90 38.9
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 4.5e-12 75.5 92 38.0
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 7.7e-12 74.7 122 37.7
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 2.2e-11 73.2 132 32.6
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 5.0e-11 72.0 83 45.8
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 1.9e-10 70.1 112 34.8
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 3.2e-10 69.3 64 46.9
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 1.2e-09 67.4 67 50.7
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 1.2e-09 67.4 63 46.0
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 1.6e-09 67.0 64 45.3
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 1.6e-09 67.0 68 42.6
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 1.6e-09 67.0 63 44.4
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 4.7e-09 65.5 67 47.8
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 1.0e-08 64.3 118 32.2
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 1.4e-08 63.9 65 46.2
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 1.4e-08 63.9 65 43.1
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 1.8e-08 63.5 65 41.5
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 2.3e-08 63.2 65 43.1
MBI01_g07128_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 4.0e-08 62.4 76 42.1
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 6.8e-08 61.6 83 37.3
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 6.8e-08 61.6 76 35.5
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 6.8e-08 61.6 76 35.5
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 8.8e-08 61.2 111 29.7
DCAR_006446 Daucus carota HOM05D006287 ORTHO05D008192 2.0e-07 60.1 109 33.0
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 2.6e-07 59.7 57 50.9
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 2.6e-07 59.7 117 29.9
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 3.4e-07 59.3 82 34.1
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 5.7e-07 58.5 73 39.7
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 9.8e-07 57.8 117 29.9
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 9.8e-07 57.8 57 47.4
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 9.8e-07 57.8 106 34.0
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 9.8e-07 57.8 100 35.0
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 1.3e-06 57.4 57 45.6
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 1.7e-06 57.0 79 35.4
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 2.2e-06 56.6 64 39.1
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 2.8e-06 56.2 62 38.7
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 2.8e-06 56.2 117 30.8
Gohir.D10G088500 Gossypium hirsutum HOM05D006287 ORTHO05D008192 2.8e-06 56.2 71 42.3
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 2.8e-06 56.2 67 37.3
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 2.8e-06 56.2 65 36.9
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 2.8e-06 56.2 130 26.9
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 3.7e-06 55.8 98 30.6
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 4.9e-06 55.5 88 28.4
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 6.3e-06 55.1 76 38.2
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 6.3e-06 55.1 73 38.4
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 8.3e-06 54.7 64 39.1
PSO339G2893 Papaver somniferum HOM05D007455 ORTHO05D009431 8.3e-06 54.7 120 30.0
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 8.3e-06 54.7 125 26.4


User provided reference genes

Program Settings