Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 0.0e+00 1561.2 809 100.0
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 0.0e+00 1432.2 803 92.0
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 0.0e+00 1418.3 809 90.2
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 0.0e+00 1394.8 807 89.1
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 0.0e+00 1389.4 807 88.7
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 0.0e+00 1296.6 808 83.5
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 0.0e+00 1082.8 815 68.5
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 0.0e+00 1078.5 808 68.3
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 5.5e-312 1073.9 807 68.9
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 4.2e-310 1067.8 811 68.3
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 1.9e-307 1058.9 781 68.8
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 4.1e-305 1051.2 807 67.3
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 3.4e-304 1048.1 804 67.8
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 4.5e-304 1047.7 809 67.7
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 1.9e-299 1032.3 820 66.8
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 9.7e-299 1030.0 799 65.1
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 1.1e-297 1026.5 798 65.7
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 1.8e-297 1025.8 796 66.5
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 1.3e-295 1019.6 810 67.5
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 2.9e-295 1018.5 814 65.7
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 2.5e-294 1015.4 807 65.7
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 3.2e-294 1015.0 797 65.0
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 7.2e-294 1013.8 806 65.8
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.1e-293 1012.3 803 64.5
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 4.6e-293 1011.1 814 64.6
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 7.9e-293 1010.4 797 65.1
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 3.0e-292 1008.4 792 65.9
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 8.8e-292 1006.9 798 64.7
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 8.2e-290 1000.3 796 64.7
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 9.1e-289 996.9 762 67.1
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 1.2e-288 996.5 564 90.6
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 1.0e-287 993.4 811 65.5
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 2.7e-285 985.3 797 64.2
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 3.6e-285 984.9 762 66.7
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 3.6e-285 984.9 809 65.3
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 7.9e-285 983.8 812 63.1
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 3.0e-284 981.9 796 65.5
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 3.7e-282 974.9 796 64.9
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 3.7e-282 974.9 796 64.2
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 4.8e-282 974.5 810 63.5
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 4.8e-282 974.5 808 64.2
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 1.1e-281 973.4 791 64.6
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 7.0e-281 970.7 796 64.9
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.6e-280 969.5 794 65.4
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 7.7e-280 967.2 825 62.1
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 5.0e-279 964.5 806 63.4
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 8.5e-279 963.8 799 64.0
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 1.5e-278 963.0 795 64.5
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 1.2e-277 959.9 796 64.3
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 8.0e-277 957.2 792 63.8
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 1.4e-276 956.4 815 63.1
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.8e-276 956.1 845 61.5
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 4.0e-276 954.9 800 62.0
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 5.2e-276 954.5 822 62.9
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 1.1e-273 946.8 806 61.3
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 9.1e-273 943.7 815 61.7
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 7.7e-272 940.6 794 63.4
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 2.2e-271 939.1 799 63.8
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 2.5e-270 935.6 815 61.2
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 2.1e-269 932.6 802 60.5
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 8.0e-269 930.6 788 62.6
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 8.0e-269 930.6 803 61.6
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 1.0e-268 930.2 790 61.0
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 7.5e-267 924.1 827 61.2
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 9.8e-267 923.7 790 60.5
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 1.3e-266 923.3 808 59.9
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 2.5e-262 909.1 797 60.5
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 3.2e-262 908.7 790 59.5
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 2.1e-261 906.0 709 66.4
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 1.8e-260 902.9 794 62.1
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 5.2e-260 901.4 797 60.4
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 8.8e-260 900.6 790 61.6
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 8.8e-260 900.6 792 59.5
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 1.2e-259 900.2 798 61.3
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 3.4e-259 898.7 790 61.5
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 4.9e-258 894.8 789 60.6
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 6.3e-258 894.4 789 60.6
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 1.8e-257 892.9 800 60.8
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 2.4e-257 892.5 796 60.4
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 2.7e-256 889.0 798 60.2
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.3e-255 886.7 796 60.1
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.7e-255 886.3 801 60.3
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 4.3e-254 881.7 801 59.3
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 7.3e-254 880.9 792 61.4
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 1.4e-252 876.7 769 59.6
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 5.2e-252 874.8 800 59.0
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 2.9e-250 869.0 803 59.0
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 4.9e-250 868.2 798 59.9
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 4.9e-250 868.2 798 59.9
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 4.9e-250 868.2 798 59.9
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 7.3e-246 854.4 805 58.4
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 6.2e-245 851.3 805 58.0
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 4.4e-243 845.1 825 55.5
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 1.7e-223 780.0 640 67.8
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.8e-221 772.7 652 64.9
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 8.1e-221 771.2 652 64.7
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 1.2e-216 757.3 797 52.7
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 2.1e-213 746.5 795 51.9
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 7.6e-203 711.4 792 51.9
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 6.7e-183 645.2 636 56.1
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 3.7e-173 612.8 458 68.8
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 4.8e-173 612.5 848 45.8
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 7.2e-169 598.6 472 66.7
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 1.8e-167 594.0 468 68.2
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 2.6e-166 590.1 476 66.8
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 5.2e-159 565.8 464 64.0
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 6.7e-159 565.5 464 64.4
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 1.5e-158 564.3 464 63.4
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 2.2e-157 560.5 464 66.4
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 1.1e-156 558.1 487 61.0
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 9.1e-156 555.1 473 64.7
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 5.7e-150 535.8 462 61.0
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 5.7e-150 535.8 462 61.0
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 1.7e-149 534.3 699 45.9
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 2.0e-147 527.3 411 66.7
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 7.7e-147 525.4 459 62.3
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 9.5e-145 518.5 457 59.7
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 2.1e-144 517.3 460 60.0
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 6.1e-144 515.8 456 59.9
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 1.8e-143 514.2 461 59.9
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 1.5e-142 511.1 461 59.9
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 3.4e-142 510.0 508 54.1
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 2.2e-141 507.3 459 60.8
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 3.5e-139 500.0 735 43.4
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 1.5e-137 494.6 710 44.4
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.3e-135 487.3 458 58.7
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 2.4e-132 477.2 459 57.5
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 7.0e-132 475.7 754 41.2
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 2.0e-131 474.2 473 57.7
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 7.8e-131 472.2 457 55.8
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 1.3e-130 471.5 456 56.4
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 1.3e-130 471.5 456 56.4
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 3.0e-130 470.3 456 56.1
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 2.5e-129 467.2 754 40.6
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 4.3e-129 466.5 463 55.9
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 3.2e-116 423.7 465 52.7
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 4.0e-111 406.8 294 73.5
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 8.7e-98 362.5 312 63.5
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 9.6e-97 359.0 454 45.6
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 4.2e-92 343.6 657 37.9
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.9e-89 334.7 272 66.5
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.8e-82 311.6 220 75.9
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 5.5e-76 290.0 197 77.2
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.9e-61 241.1 166 72.9
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.9e-61 241.1 166 72.9
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 3.6e-59 234.2 361 41.8
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 1.3e-56 225.7 795 29.3
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 1.2e-51 209.1 359 37.6
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 8.8e-50 203.0 146 65.8
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 4.4e-49 200.7 147 64.6
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 3.7e-48 197.6 426 33.3
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 1.2e-46 192.6 140 65.7
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.1e-27 128.6 155 45.2
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.8e-26 125.6 155 43.9
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 4.4e-25 120.9 90 65.6
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.8e-18 99.0 87 65.5
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 5.8e-17 94.0 70 57.1
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 4.3e-12 77.8 94 42.6
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.2e-11 76.3 58 62.1


User provided reference genes

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