Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1012.4 Capsicum annuum HOM05D000806 ORTHO05D002320 7.6e-115 417.2 207 100.0
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 3.9e-103 378.3 234 82.9
CAN.G219.28 Capsicum annuum HOM05D001133 ORTHO05D000941 1.5e-102 376.3 222 86.0
Solyc00g500065.1 Solanum lycopersicum HOM05D000806 ORTHO05D002320 4.3e-94 348.2 209 84.7
CAN.G1183.3 Capsicum annuum HOM05D000806 ORTHO05D002320 2.6e-91 339.0 189 91.5
Peaxi162Scf00021g00818 Petunia axillaris HOM05D000806 ORTHO05D002320 1.6e-88 329.7 224 79.0
Hma1.2p1_0355F.1_g133926 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 5.7e-78 294.7 223 70.4
CSS0050017 Camellia sinensis var. sinensis HOM05D000806 ORTHO05D002320 1.4e-71 273.5 218 67.9
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 2.5e-65 252.7 211 63.5
DCAR_032493 Daucus carota HOM05D000806 ORTHO05D002320 1.5e-62 243.4 218 62.8
PGR111G0026 Punica granatum HOM05D000806 ORTHO05D002320 4.4e-62 241.9 210 61.0
CAN.G1.10 Capsicum annuum HOM05D000806 ORTHO05D002320 1.0e-58 230.7 123 92.7
Sed0009930 Sechium edule HOM05D000806 ORTHO05D002320 8.5e-58 227.6 208 61.1
HanXRQChr00c0702g0576831 Helianthus annuus HOM05D000806 ORTHO05D002320 1.1e-57 227.3 214 62.1
HanXRQChr01g0020371 Helianthus annuus HOM05D000806 ORTHO05D002320 1.1e-57 227.3 214 62.1
HanXRQChr02g0044911 Helianthus annuus HOM05D000806 ORTHO05D002320 1.1e-57 227.3 214 62.1
HanXRQChr10g0289251 Helianthus annuus HOM05D000806 ORTHO05D002320 1.1e-57 227.3 214 62.1
HanXRQChr11g0326811 Helianthus annuus HOM05D000806 ORTHO05D002320 1.1e-57 227.3 214 62.1
HanXRQCPg0580021 Helianthus annuus HOM05D000806 ORTHO05D002320 1.1e-57 227.3 214 62.1
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.6e-56 223.4 218 58.7
RcHm_v2.0_CPg0502101 Rosa chinensis HOM05D000806 ORTHO05D002320 3.6e-56 222.2 218 57.8
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 7.5e-54 214.5 218 56.9
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 3.1e-52 209.1 216 58.8
Potri.013G162600 Populus trichocarpa HOM05D000806 ORTHO05D002320 5.4e-52 208.4 217 56.7
Solyc09g091410.2 Solanum lycopersicum HOM05D000806 ORTHO05D002320 5.4e-52 208.4 133 82.0
Migut.L00565 Erythranthe guttata HOM05D000806 ORTHO05D002320 1.0e-50 204.1 181 63.0
HanXRQChr08g0210341 Helianthus annuus HOM05D000806 ORTHO05D002320 2.3e-50 203.0 204 60.3
Nn010s41447 Nelumbo nucifera HOM05D000806 ORTHO05D002320 3.8e-50 202.2 192 62.0
Nn010s41432 Nelumbo nucifera HOM05D000806 ORTHO05D002320 4.2e-49 198.7 223 57.4
PSO548G0072 Papaver somniferum HOM05D000806 ORTHO05D002320 1.6e-48 196.8 218 53.7
EL10As15g24118 Beta vulgaris HOM05D001133 ORTHO05D000941 2.8e-48 196.1 216 54.6
LjContig00318g0000728 Lotus japonicus HOM05D000806 ORTHO05D002320 2.3e-47 193.0 218 51.8
arahy.Tifrunner.gnm1.ann1.0T2FMW Arachis hypogaea HOM05D000445 ORTHO05D000314 6.8e-47 191.4 221 52.5
HanXRQChr02g0041561 Helianthus annuus HOM05D000806 ORTHO05D002320 1.7e-45 186.8 214 53.3
MELO3C000334.2 Cucumis melo HOM05D000806 ORTHO05D002320 1.4e-44 183.7 169 60.4
RcHm_v2.0_Chr5g0042991 Rosa chinensis HOM05D000806 ORTHO05D002320 2.7e-43 179.5 185 56.2
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.3e-42 177.2 218 49.5
HanXRQChr10g0283541 Helianthus annuus HOM05D000806 ORTHO05D002320 5.0e-42 175.3 214 52.3
BolSC29t60465H Brassica oleracea HOM05D000806 ORTHO05D002320 1.2e-40 170.6 218 45.9
BolSC47t61099H Brassica oleracea HOM05D000806 ORTHO05D002320 1.2e-40 170.6 218 45.9
BraA06t25423Z Brassica rapa HOM05D000806 ORTHO05D002320 2.1e-40 169.9 217 46.1
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 2.1e-40 169.9 217 46.1
C09p40220 Brassica napus HOM05D000806 ORTHO05D002320 2.8e-40 169.5 218 45.9
ATCG00500 Arabidopsis thaliana HOM05D000806 ORTHO05D002320 1.4e-39 167.2 182 51.1
Nitab4.5_0009663g0050 Nicotiana tabacum HOM05D000806 ORTHO05D002320 4.0e-39 165.6 92 87.0
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 8.9e-39 164.5 219 48.4
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 8.9e-39 164.5 219 48.4
HanXRQChr13g0413531 Helianthus annuus HOM05D000806 ORTHO05D002320 2.0e-38 163.3 151 62.9
arahy.Tifrunner.gnm1.ann1.J4M97S Arachis hypogaea HOM05D000806 ORTHO05D002320 3.4e-38 162.5 221 48.0
Gohir.D13G043800 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.4e-38 162.5 218 47.7
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.7e-37 160.2 219 47.5
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.7e-37 160.2 219 47.5
Thhalv10011034m.g Eutrema salsugineum HOM05D000806 ORTHO05D002320 2.9e-37 159.5 217 44.7
arahy.Tifrunner.gnm1.ann1.HP88CG Arachis hypogaea HOM05D000806 ORTHO05D002320 6.4e-37 158.3 153 56.9
MELO3C029533.2 Cucumis melo HOM05D000806 ORTHO05D002320 2.0e-35 153.3 144 56.2
AL2G21530 Arabidopsis lyrata HOM05D000806 ORTHO05D002320 3.9e-34 149.1 182 48.4
MELO3C028653.2 Cucumis melo HOM05D000806 ORTHO05D002320 7.3e-33 144.8 130 61.5
Lj1g0000993 Lotus japonicus HOM05D000806 ORTHO05D002320 2.1e-32 143.3 213 44.6
BolSC46t60998H Brassica oleracea HOM05D000806 ORTHO05D002320 6.2e-32 141.7 203 44.3
MELO3C034228.2 Cucumis melo HOM05D000806 ORTHO05D002320 8.9e-31 137.9 132 56.8
Eucgr.I02537 Eucalyptus grandis HOM05D000806 ORTHO05D002320 8.9e-31 137.9 171 51.5
Solyc04g039830.3 Solanum lycopersicum HOM05D000806 ORTHO05D002320 2.0e-30 136.7 196 49.0
Lsat_1_v5_gn_4_102681 Lactuca sativa HOM05D000806 ORTHO05D002320 2.7e-27 126.3 128 60.2
EL10As12g24027 Beta vulgaris HOM05D000806 ORTHO05D002320 1.3e-26 124.0 184 48.9
HanXRQChr10g0284231 Helianthus annuus HOM05D000806 ORTHO05D002320 5.1e-26 122.1 99 64.6
CARHR282090 Cardamine hirsuta HOM05D000806 ORTHO05D002320 6.6e-26 121.7 152 50.7
Gohir.A07G163654 Gossypium hirsutum HOM05D000806 ORTHO05D002320 4.7e-24 115.5 120 54.2
Lsat_1_v5_gn_7_98321 Lactuca sativa HOM05D000806 ORTHO05D002320 4.7e-24 115.5 200 44.0
Hma1.2p1_0242F.1_g100626 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 9.9e-22 107.8 76 71.1
Hma1.2p1_0355F.1_g133923 Hydrangea macrophylla HOM05D000806 ORTHO05D002320 9.9e-22 107.8 76 71.1
SGA_v2.0_scaffold781G53597 Striga asiatica HOM05D000806 ORTHO05D002320 1.7e-21 107.1 146 43.8
Gorai.003G066100 Gossypium raimondii HOM05D000806 ORTHO05D002320 8.3e-21 104.8 152 42.1
BolC9t55819H Brassica oleracea HOM05D000806 ORTHO05D002320 1.7e-18 97.1 117 43.6
Gohir.A09G101966 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.0e-18 96.3 154 39.6
CAN.G398.12 Capsicum annuum HOM05D001133 ORTHO05D000941 6.6e-18 95.1 64 79.7
Lalb_Chr23g0274541 Lupinus albus HOM05D000806 ORTHO05D002320 6.6e-18 95.1 106 50.9
MD02G1049500 Malus domestica HOM05D000806 ORTHO05D002320 8.6e-18 94.7 103 53.4
MELO3C031612.2 Cucumis melo HOM05D000806 ORTHO05D002320 1.9e-17 93.6 115 50.4
arahy.Tifrunner.gnm1.ann1.3WU3U6 Arachis hypogaea HOM05D000806 ORTHO05D002320 9.5e-17 91.3 121 52.1
Gorai.001G206400 Gossypium raimondii HOM05D001133 ORTHO05D000941 1.1e-15 87.8 72 58.3
Gohir.A11G156733 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.1e-15 86.3 90 56.7
Gohir.A07G134850 Gossypium hirsutum HOM05D000806 ORTHO05D002320 5.2e-15 85.5 82 58.5
MD11G1294800 Malus domestica HOM05D000806 ORTHO05D002320 8.9e-15 84.7 87 54.0
Gorai.013G138600 Gossypium raimondii HOM05D000806 ORTHO05D002320 1.2e-14 84.3 90 56.7
CAN.G212.7 Capsicum annuum HOM05D000680 ORTHO05D002320 2.6e-14 83.2 67 64.2
Migut.D01360 Erythranthe guttata HOM05D000806 ORTHO05D002320 2.6e-14 83.2 125 44.0
Gohir.D13G123550 Gossypium hirsutum HOM05D000806 ORTHO05D002320 5.8e-14 82.0 102 51.0
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 7.6e-14 81.6 84 52.4
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 9.2e-12 74.7 55 69.1
Gohir.A07G163645 Gossypium hirsutum HOM05D001133 ORTHO05D000941 6.0e-11 72.0 65 52.3
Phvul.002G278116 Phaseolus vulgaris HOM05D000806 ORTHO05D002320 7.8e-11 71.6 101 39.6
Solyc01g017200.2 Solanum lycopersicum HOM05D000806 ORTHO05D002320 7.8e-11 71.6 67 62.7
Lsat_1_v5_gn_4_69480 Lactuca sativa HOM05D000806 ORTHO05D002320 1.0e-10 71.2 82 51.2
arahy.Tifrunner.gnm1.ann1.66QNKN Arachis hypogaea HOM05D000806 ORTHO05D038833 9.6e-09 64.7 49 61.2
MD02G1049600 Malus domestica HOM05D001133 ORTHO05D000941 1.4e-07 60.8 69 56.5
Medtr5g009280 Medicago truncatula HOM05D000806 ORTHO05D002320 2.0e-06 57.0 40 65.0
Gorai.005G127400 Gossypium raimondii HOM05D000806 ORTHO05D002320 7.6e-06 55.1 66 43.9
Solyc02g032810.1 Solanum lycopersicum HOM05D000806 ORTHO05D002320 9.9e-06 54.7 42 69.0


User provided reference genes

Program Settings