Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1007.6 Capsicum annuum HOM05D002224 ORTHO05D030959 2.3e-56 221.9 103 100.0
PGSC0003DMG401017193 Solanum tuberosum HOM05D000243 ORTHO05D018895 3.6e-25 118.2 67 80.6
PGSC0003DMG402017193 Solanum tuberosum HOM05D000243 ORTHO05D018895 3.6e-25 118.2 67 80.6
Sopen09g032470 Solanum pennellii HOM05D000243 ORTHO05D018895 9.9e-23 110.2 67 76.1
Solyc09g089550.4 Solanum lycopersicum HOM05D000243 ORTHO05D018895 3.8e-22 108.2 67 76.1
Nitab4.5_0005738g0010 Nicotiana tabacum HOM05D002224 ORTHO05D002446 2.4e-21 105.5 82 58.5
Nitab4.5_0008399g0010 Nicotiana tabacum HOM05D002224 ORTHO05D002446 2.4e-21 105.5 82 58.5
Peaxi162Scf00024g00053 Petunia axillaris HOM05D002224 ORTHO05D002446 3.2e-21 105.1 88 55.7
CAN.G1007.9 Capsicum annuum HOM05D002224 ORTHO05D002446 1.1e-18 96.7 83 56.6
Peaxi162Scf00019g00284 Petunia axillaris HOM05D002224 ORTHO05D002446 1.5e-18 96.3 82 54.9
Nitab4.5_0005738g0030 Nicotiana tabacum HOM05D002224 ORTHO05D030959 2.8e-17 92.0 72 63.9
Solyc06g053750.3 Solanum lycopersicum HOM05D002224 ORTHO05D002446 3.6e-17 91.7 89 49.4
Sopen06g018860 Solanum pennellii HOM05D002224 ORTHO05D002446 3.6e-17 91.7 89 49.4
PGSC0003DMG401016322 Solanum tuberosum HOM05D002224 ORTHO05D002446 6.2e-17 90.9 89 49.4
PGSC0003DMG400017192 Solanum tuberosum HOM05D002224 ORTHO05D002446 2.4e-16 89.0 82 53.7
Dinv29900 Davidia involucrata HOM05D002224 ORTHO05D002446 2.0e-15 85.9 89 43.8
Nitab4.5_0000436g0070 Nicotiana tabacum HOM05D002224 ORTHO05D002446 5.8e-15 84.3 83 51.8
Cc03_g04990 Coffea canephora HOM05D002224 ORTHO05D002446 7.6e-15 84.0 89 44.9
Nitab4.5_0003331g0070 Nicotiana tabacum HOM05D002224 ORTHO05D002446 7.6e-15 84.0 83 50.6
CAN.G638.71 Capsicum annuum HOM05D002224 ORTHO05D002446 4.9e-14 81.3 89 47.2
Sopen03g001460 Solanum pennellii HOM05D002224 ORTHO05D002446 4.2e-13 78.2 90 46.7
Nitab4.5_0001418g0030 Nicotiana tabacum HOM05D000243 ORTHO05D018895 5.4e-13 77.8 76 53.9
Psat6g107120 Pisum sativum HOM05D002224 ORTHO05D002446 5.4e-13 77.8 81 45.7
Gohir.A02G036400 Gossypium hirsutum HOM05D002224 ORTHO05D002446 7.1e-13 77.4 82 46.3
Gohir.D02G043000 Gossypium hirsutum HOM05D002224 ORTHO05D002446 7.1e-13 77.4 82 47.6
Sopen09g032480 Solanum pennellii HOM05D002224 ORTHO05D002446 7.1e-13 77.4 84 50.0
Thecc.04G247700 Theobroma cacao HOM05D002224 ORTHO05D002446 9.3e-13 77.0 82 46.3
Actinidia04472 Actinidia chinensis HOM05D002224 ORTHO05D030959 1.2e-12 76.6 89 40.4
Phvul.007G271500 Phaseolus vulgaris HOM05D002224 ORTHO05D002446 1.6e-12 76.3 83 45.8
Solyc03g005430.4 Solanum lycopersicum HOM05D002224 ORTHO05D002446 2.1e-12 75.9 90 45.6
TPR.G28750 Trifolium pratense HOM05D002224 ORTHO05D002446 2.1e-12 75.9 81 45.7
VMungo0720G3056 Vigna mungo HOM05D002224 ORTHO05D002446 2.1e-12 75.9 83 45.8
MSTRG.21894 Avicennia marina HOM05D002224 ORTHO05D002446 4.6e-12 74.7 80 45.0
Gorai.005G047400 Gossypium raimondii HOM05D002224 ORTHO05D002446 6.0e-12 74.3 82 46.3
Phvul.007G129700 Phaseolus vulgaris HOM05D002224 ORTHO05D002446 1.0e-11 73.6 79 45.6
arahy.Tifrunner.gnm1.ann1.P060ZG Arachis hypogaea HOM05D002224 ORTHO05D002446 2.3e-11 72.4 82 43.9
arahy.Tifrunner.gnm1.ann1.1XI841 Arachis hypogaea HOM05D002224 ORTHO05D002446 3.0e-11 72.0 83 41.0
arahy.Tifrunner.gnm1.ann1.E2XQ4Y Arachis hypogaea HOM05D002224 ORTHO05D002446 3.0e-11 72.0 83 41.0
CSS0035478 Camellia sinensis var. sinensis HOM05D002224 ORTHO05D002446 5.1e-11 71.2 81 40.7
Glyma.10G008700 Glycine max HOM05D002224 ORTHO05D002446 5.1e-11 71.2 85 45.9
Glyma.10G188600 Glycine max HOM05D002224 ORTHO05D002446 5.1e-11 71.2 83 39.8
Gohir.A10G113500 Gossypium hirsutum HOM05D002224 ORTHO05D002446 5.1e-11 71.2 82 41.5
Glyma.20G202100 Glycine max HOM05D002224 ORTHO05D002446 6.6e-11 70.9 83 41.0
Gohir.A09G223700 Gossypium hirsutum HOM05D002224 ORTHO05D002446 6.6e-11 70.9 82 42.7
Gohir.D09G225700 Gossypium hirsutum HOM05D002224 ORTHO05D002446 6.6e-11 70.9 82 42.7
Gorai.006G247200 Gossypium raimondii HOM05D002224 ORTHO05D002446 8.7e-11 70.5 82 42.7
Gohir.D10G153900 Gossypium hirsutum HOM05D002224 ORTHO05D002446 1.1e-10 70.1 82 40.2
Gorai.011G171900 Gossypium raimondii HOM05D002224 ORTHO05D002446 1.1e-10 70.1 82 40.2
arahy.Tifrunner.gnm1.ann1.V2K6XN Arachis hypogaea HOM05D002224 ORTHO05D002446 1.5e-10 69.7 82 42.7
Lalb_Chr21g0312421 Lupinus albus HOM05D002224 ORTHO05D002446 1.5e-10 69.7 83 42.2
Lalb_Chr19g0128431 Lupinus albus HOM05D002224 ORTHO05D002446 1.9e-10 69.3 82 41.5
Atru.chr4.2182 Acer truncatum HOM05D002224 ORTHO05D002446 2.5e-10 68.9 89 39.3
Psat6g132600 Pisum sativum HOM05D002224 ORTHO05D002446 2.5e-10 68.9 81 40.7
COL.COLO4_15805 Corchorus olitorius HOM05D002224 ORTHO05D002446 3.3e-10 68.6 82 41.5
Lalb_Chr03g0037041 Lupinus albus HOM05D002224 ORTHO05D002446 3.3e-10 68.6 82 42.7
MD16G1211000 Malus domestica HOM05D002224 ORTHO05D002446 3.3e-10 68.6 81 45.7
RcHm_v2.0_Chr4g0391041 Rosa chinensis HOM05D002224 ORTHO05D002446 3.3e-10 68.6 86 40.7
Duzib212G0982 Durio zibethinus HOM05D002224 ORTHO05D002446 5.6e-10 67.8 82 41.5
Prupe.1G033200 Prunus persica HOM05D002224 ORTHO05D002446 5.6e-10 67.8 83 42.2
Ca_11941_v3 Cicer arietinum L. HOM05D002224 ORTHO05D002446 7.3e-10 67.4 76 44.7
QL06p015924 Quercus lobata HOM05D002224 ORTHO05D002446 7.3e-10 67.4 83 41.0
DCAR_027286 Daucus carota HOM05D002224 ORTHO05D002446 1.3e-09 66.6 72 45.8
Glyma.20G086700 Glycine max HOM05D002224 ORTHO05D002446 1.3e-09 66.6 85 43.5
Duzib052G0795 Durio zibethinus HOM05D002224 ORTHO05D002446 1.6e-09 66.2 82 40.2
SalBow3G3388 Salvia bowleyana HOM05D002224 ORTHO05D002446 1.6e-09 66.2 76 39.5
TAR633G1794 Trochodendron aralioides HOM05D002224 ORTHO05D002446 1.6e-09 66.2 85 43.5
VMungo0720G0464 Vigna mungo HOM05D002224 ORTHO05D002446 1.6e-09 66.2 83 38.6
DCAR_030728 Daucus carota HOM05D002224 ORTHO05D002446 2.1e-09 65.9 82 37.8
TPR.G26447 Trifolium pratense HOM05D002224 ORTHO05D002446 2.8e-09 65.5 81 40.7
MSTRG.24697 Avicennia marina HOM05D002224 ORTHO05D002446 3.6e-09 65.1 66 43.9
Medtr1g073790 Medicago truncatula HOM05D002224 ORTHO05D002446 3.6e-09 65.1 77 41.6
Potri.008G163300 Populus trichocarpa HOM05D002224 ORTHO05D002446 3.6e-09 65.1 82 37.8
MD13G1209100 Malus domestica HOM05D002224 ORTHO05D002446 6.2e-09 64.3 81 42.0
Lalb_Chr02g0150611 Lupinus albus HOM05D002224 ORTHO05D002446 8.1e-09 63.9 83 37.3
Potri.010G075000 Populus trichocarpa HOM05D002224 ORTHO05D002446 8.1e-09 63.9 71 46.5
vmacro15416 Vaccinium macrocarpon HOM05D002224 ORTHO05D002446 1.4e-08 63.2 78 38.5
Lj6g0016969 Lotus japonicus HOM05D002224 ORTHO05D002446 1.8e-08 62.8 73 43.8
CAN.G1867.2 Capsicum annuum HOM05D002224 ORTHO05D002446 2.4e-08 62.4 47 61.7
Cpa.g.sc44.110 Carica papaya HOM05D002224 ORTHO05D002446 2.4e-08 62.4 83 36.1
Ciclev10004192m.g Citrus clementina HOM05D002224 ORTHO05D002446 2.4e-08 62.4 81 38.3
FvH4_4g02970 Fragaria vesca HOM05D002224 ORTHO05D002446 2.4e-08 62.4 87 39.1
FAN12G1014 Fragaria x ananassa HOM05D002224 ORTHO05D002446 2.4e-08 62.4 87 39.1
FAN17G0240 Fragaria x ananassa HOM05D002224 ORTHO05D002446 2.4e-08 62.4 87 39.1
Oeu036133.2 Olea europaea HOM05D002224 ORTHO05D002446 2.4e-08 62.4 86 43.0
Actinidia05459 Actinidia chinensis HOM05D002224 ORTHO05D002446 4.0e-08 61.6 80 40.0
SalBow2G1285 Salvia bowleyana HOM05D002224 ORTHO05D002446 4.0e-08 61.6 73 42.5
Oeu002596.1 Olea europaea HOM05D002224 ORTHO05D002446 6.9e-08 60.8 83 41.0
MELO3C006460.2 Cucumis melo HOM05D002224 ORTHO05D002446 9.0e-08 60.5 80 43.8
CsaV3_3G012500 Cucumis sativus L. HOM05D002224 ORTHO05D002446 9.0e-08 60.5 80 43.8
Medtr1g044450 Medicago truncatula HOM05D002224 ORTHO05D002446 9.0e-08 60.5 98 35.7
Rhsim02G0034400 Rhododendron simsii HOM05D002224 ORTHO05D002446 9.0e-08 60.5 78 38.5
Lj5g0007272 Lotus japonicus HOM05D002224 ORTHO05D002446 1.2e-07 60.1 82 39.0
Hund04557 Selenicereus undatus HOM05D002224 ORTHO05D002446 1.5e-07 59.7 81 38.3
DCAR_002341 Daucus carota HOM05D002224 ORTHO05D002446 2.0e-07 59.3 82 41.5
Gorai.002G024900 Gossypium raimondii HOM05D002224 ORTHO05D002446 2.0e-07 59.3 70 42.9
Sabra10G0033800 Salix brachista HOM05D002224 ORTHO05D002446 2.0e-07 59.3 76 43.4
vmacro08439 Vaccinium macrocarpon HOM05D002224 ORTHO05D002446 2.6e-07 58.9 77 42.9
TAR362G0167 Trochodendron aralioides HOM05D002224 ORTHO05D002446 3.4e-07 58.5 80 40.0
MBI11_g40184_MAGBIO Magnolia biondii HOM05D002224 ORTHO05D002446 4.5e-07 58.2 79 40.5
Eucgr.H03150 Eucalyptus grandis HOM05D002224 ORTHO05D002446 5.8e-07 57.8 81 38.3
Ca_11949_v3 Cicer arietinum L. HOM05D002224 ORTHO05D002446 7.6e-07 57.4 83 38.6
Lj3A795G23 Lonicera japonica HOM05D002224 ORTHO05D002446 7.6e-07 57.4 84 41.7
AUR62015466 Chenopodium quinoa HOM05D002224 ORTHO05D002446 9.9e-07 57.0 66 40.9
Sabra08G0124600 Salix brachista HOM05D002224 ORTHO05D002446 1.3e-06 56.6 75 40.0
CiPaw.01G189300 Carya illinoinensis HOM05D002224 ORTHO05D002446 2.2e-06 55.8 66 40.9
AUR62002254 Chenopodium quinoa HOM05D002224 ORTHO05D002446 2.2e-06 55.8 66 40.9
FAN22G0018 Fragaria x ananassa HOM05D002224 ORTHO05D002446 2.2e-06 55.8 75 44.0
SGA_v2.0_scaffold308G48105 Striga asiatica HOM05D002224 ORTHO05D002446 2.2e-06 55.8 72 41.7
TWI53G1239 Tripterygium wilfordii HOM05D002224 ORTHO05D002446 2.2e-06 55.8 82 37.8
TWI53G1395 Tripterygium wilfordii HOM05D002224 ORTHO05D002446 2.2e-06 55.8 82 37.8
Rhsim04G0189200 Rhododendron simsii HOM05D002224 ORTHO05D002446 3.8e-06 55.1 88 35.2
CiPaw.02G115800 Carya illinoinensis HOM05D002224 ORTHO05D002446 4.9e-06 54.7 66 40.9
TWI73G0813 Tripterygium wilfordii HOM05D002224 ORTHO05D002446 4.9e-06 54.7 82 40.2
Nn3g19583 Nelumbo nucifera HOM05D002224 ORTHO05D002446 6.4e-06 54.3 65 43.1
TAR365G0712 Trochodendron aralioides HOM05D002224 ORTHO05D002446 8.4e-06 53.9 65 43.1


User provided reference genes

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