Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 1.2e-35 152.5 74 100.0
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 6.4e-32 140.2 74 90.5
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 6.4e-32 140.2 74 90.5
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 6.4e-32 140.2 74 90.5
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 6.4e-32 140.2 74 90.5
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 6.4e-32 140.2 74 90.5
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 1.9e-31 138.7 73 89.0
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 2.4e-31 138.3 72 90.3
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 2.4e-31 138.3 72 90.3
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 5.4e-31 137.1 74 87.8
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 5.4e-31 137.1 74 87.8
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 5.4e-31 137.1 74 87.8
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 5.4e-31 137.1 74 87.8
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 5.4e-31 137.1 74 87.8
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 5.4e-31 137.1 74 87.8
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 5.4e-31 137.1 74 87.8
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 5.4e-31 137.1 74 87.8
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 5.4e-31 137.1 74 87.8
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 5.4e-31 137.1 74 87.8
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 2.1e-30 135.2 72 87.5
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 2.1e-30 135.2 72 87.5
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 2.7e-30 134.8 74 85.1
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 3.5e-30 134.4 74 86.5
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 3.5e-30 134.4 74 86.5
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 4.6e-30 134.0 72 86.1
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 7.8e-30 133.3 74 86.5
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 7.8e-30 133.3 74 86.5
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 7.8e-30 133.3 74 86.5
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 7.8e-30 133.3 74 86.5
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 7.8e-30 133.3 74 86.5
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 7.8e-30 133.3 74 87.8
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 1.0e-29 132.9 74 83.8
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 1.3e-29 132.5 74 83.8
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 1.3e-29 132.5 74 83.8
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 3.0e-29 131.3 72 84.7
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 3.0e-29 131.3 72 84.7
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 6.6e-29 130.2 70 85.7
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 1.1e-28 129.4 74 83.8
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 1.1e-28 129.4 74 83.8
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 1.1e-28 129.4 74 83.8
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 1.1e-28 129.4 74 83.8
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 1.1e-28 129.4 74 81.1
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 1.1e-28 129.4 74 81.1
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 1.1e-28 129.4 74 81.1
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 1.1e-28 129.4 71 83.1
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 1.5e-28 129.0 73 84.9
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 1.5e-28 129.0 73 84.9
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 1.5e-28 129.0 74 82.4
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 1.5e-28 129.0 74 82.4
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 1.5e-28 129.0 74 82.4
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 2.5e-28 128.3 70 84.3
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 3.3e-28 127.9 72 83.3
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 4.3e-28 127.5 72 84.7
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 1.6e-27 125.6 68 85.3
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 1.6e-27 125.6 68 85.3
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 2.1e-27 125.2 72 83.3
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 2.8e-27 124.8 74 79.7
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 2.8e-27 124.8 72 84.7
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 4.8e-27 124.0 74 82.4
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 6.2e-27 123.6 74 78.4
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 6.2e-27 123.6 70 84.3
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 1.1e-26 122.9 72 83.3
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 3.1e-26 121.3 74 81.1
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 5.3e-26 120.6 63 88.9
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 9.0e-26 119.8 74 77.0
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 1.2e-25 119.4 73 76.7
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 2.0e-25 118.6 72 77.8
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 2.0e-25 118.6 66 83.3
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 4.4e-25 117.5 67 82.1
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.9e-24 114.8 74 77.0
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 4.9e-24 114.0 69 76.8
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 4.9e-24 114.0 61 85.2
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 3.2e-23 111.3 69 76.8
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 7.1e-23 110.2 69 75.4
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 2.1e-22 108.6 74 68.9
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.7e-22 108.2 70 72.9
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 6.6e-21 103.6 71 73.2
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 7.3e-20 100.1 71 67.6
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 9.6e-20 99.8 66 69.7
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 3.6e-19 97.8 61 75.4
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.8e-19 97.4 66 66.7
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.8e-19 97.4 55 81.8
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 6.2e-19 97.1 66 69.7
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 1.1e-18 96.3 69 68.1
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 6.9e-18 93.6 69 65.2
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 6.9e-18 93.6 69 65.2
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 1.2e-17 92.8 54 79.6
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.2e-17 92.8 73 65.8
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.0e-17 92.0 69 63.8
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.0e-17 92.0 69 63.8
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 3.4e-17 91.3 53 81.1
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 4.2e-15 84.3 60 68.3
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 4.2e-15 84.3 60 68.3
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.5e-14 81.3 49 75.5
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 3.9e-13 77.8 42 83.3
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 1.5e-12 75.9 46 71.7
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 7.4e-12 73.6 47 74.5
Nitab4.5_0000684g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 9.6e-12 73.2 44 72.7
MELO3C013035.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.6e-11 72.4 60 63.3
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 1.6e-11 72.4 53 64.2
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 2.1e-11 72.0 59 61.0
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 4.8e-11 70.9 59 61.0
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 1.8e-10 68.9 36 83.3
ATR0135G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.4e-09 64.7 52 59.6
C09p10440 Brassica napus HOM05D002864 ORTHO05D008485 3.8e-08 61.2 47 68.1
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 3.2e-07 58.2 34 79.4
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 4.2e-07 57.8 37 75.7


User provided reference genes

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