Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 8.3e-117 423.7 213 100.0
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 4.2e-92 341.7 222 81.5
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 2.6e-86 322.4 221 78.3
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 2.8e-80 302.4 225 75.6
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 3.2e-76 288.9 221 72.4
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 5.0e-61 238.4 148 85.1
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.4e-60 236.9 148 84.5
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.9e-60 236.5 148 84.5
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 2.5e-60 236.1 148 83.8
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.2e-60 235.7 148 83.8
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 9.4e-60 234.2 148 83.1
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.2e-59 233.8 148 83.8
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.7e-59 231.9 149 82.6
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 6.1e-59 231.5 149 81.9
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 7.9e-59 231.1 148 81.8
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.3e-58 229.6 148 81.8
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 3.3e-57 225.7 148 80.4
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 1.7e-56 223.4 148 81.8
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 2.2e-56 223.0 148 81.8
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 1.2e-54 217.2 148 77.7
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 5.9e-54 214.9 148 77.7
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 7.7e-54 214.5 131 87.8
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 7.7e-54 214.5 148 76.4
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 1.7e-53 213.4 148 75.0
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 2.2e-53 213.0 148 76.4
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 2.2e-53 213.0 155 72.3
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.9e-53 212.6 140 77.1
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 3.8e-53 212.2 151 72.8
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 3.8e-53 212.2 150 73.3
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 5.0e-53 211.8 148 75.0
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 5.0e-53 211.8 147 75.5
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 6.5e-53 211.5 155 71.6
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 6.5e-53 211.5 155 71.6
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 8.5e-53 211.1 158 69.6
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 8.5e-53 211.1 148 74.3
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 1.1e-52 210.7 156 71.2
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-52 210.7 148 73.0
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 1.5e-52 210.3 150 73.3
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 1.9e-52 209.9 147 74.8
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 1.9e-52 209.9 148 73.6
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 1.9e-52 209.9 148 75.7
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 1.9e-52 209.9 148 74.3
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 2.5e-52 209.5 155 70.3
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 2.5e-52 209.5 180 63.3
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 2.5e-52 209.5 148 75.0
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.5e-52 209.5 154 72.1
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 3.2e-52 209.1 148 74.3
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 4.2e-52 208.8 149 72.5
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 4.2e-52 208.8 148 74.3
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 5.5e-52 208.4 148 70.9
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 5.5e-52 208.4 148 73.0
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 9.4e-52 207.6 148 73.6
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 9.4e-52 207.6 156 68.6
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.4e-52 207.6 156 68.6
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.4e-52 207.6 156 68.6
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 9.4e-52 207.6 156 68.6
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 9.4e-52 207.6 155 69.7
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 9.4e-52 207.6 155 69.7
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 9.4e-52 207.6 156 68.6
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 1.2e-51 207.2 152 71.1
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 1.6e-51 206.8 147 72.8
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 1.6e-51 206.8 148 73.0
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 1.6e-51 206.8 147 72.8
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 2.1e-51 206.5 148 71.6
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 2.1e-51 206.5 147 77.6
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 2.1e-51 206.5 148 72.3
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 2.1e-51 206.5 155 69.7
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 2.7e-51 206.1 152 71.1
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 2.7e-51 206.1 148 72.3
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 2.7e-51 206.1 148 72.3
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 2.7e-51 206.1 158 69.6
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 3.6e-51 205.7 155 68.4
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 3.6e-51 205.7 148 73.0
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 3.6e-51 205.7 155 69.7
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 3.6e-51 205.7 152 71.1
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.6e-51 205.7 147 72.8
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.6e-51 205.7 147 72.8
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 4.7e-51 205.3 152 68.4
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 4.7e-51 205.3 155 69.0
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 8.0e-51 204.5 148 70.9
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 8.0e-51 204.5 152 70.4
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 1.4e-50 203.8 148 70.9
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 1.4e-50 203.8 155 67.7
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 1.8e-50 203.4 149 72.5
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 2.3e-50 203.0 148 70.3
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 2.3e-50 203.0 155 68.4
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 2.3e-50 203.0 155 69.0
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 6.7e-50 201.4 149 71.1
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 6.7e-50 201.4 155 67.7
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 8.8e-50 201.1 152 68.4
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 1.1e-49 200.7 149 71.8
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 2.0e-49 199.9 183 60.1
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.6e-49 199.5 151 69.5
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 2.6e-49 199.5 147 74.8
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 2.6e-49 199.5 148 71.6
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 3.3e-49 199.1 148 70.3
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 5.7e-49 198.4 148 68.9
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 1.7e-48 196.8 155 65.8
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.8e-48 196.1 173 61.8
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.7e-48 195.7 173 61.8
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.7e-48 195.7 173 61.8
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 3.7e-48 195.7 175 62.3
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 8.2e-48 194.5 165 63.6
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 1.1e-47 194.1 148 67.6
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 1.4e-47 193.7 165 63.6
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.4e-47 193.7 152 67.8
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 1.4e-47 193.7 148 70.3
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 1.4e-47 193.7 155 62.6
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 4.1e-47 192.2 155 62.6
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 7.0e-47 191.4 150 69.3
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.2e-46 190.7 104 92.3
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.5e-46 188.7 193 56.0
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 7.7e-46 188.0 147 66.7
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 3.8e-45 185.7 157 61.8
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 1.9e-44 183.3 157 63.1
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.9e-44 183.3 137 72.3
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 3.2e-44 182.6 157 62.4
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 5.5e-44 181.8 137 72.3
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 1.2e-43 180.6 147 65.3
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 2.7e-43 179.5 203 51.2
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 2.7e-43 179.5 156 60.3
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 1.5e-41 173.7 108 80.6
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 2.6e-41 172.9 112 75.9
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 5.7e-41 171.8 112 75.0
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 5.7e-41 171.8 112 75.9
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 7.5e-41 171.4 138 65.2
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 9.8e-41 171.0 110 76.4
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 9.8e-41 171.0 126 69.8
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.7e-40 170.2 132 68.2
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 6.3e-40 168.3 124 70.2
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 8.3e-40 167.9 147 61.9
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.1e-39 167.5 133 66.2
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 1.4e-39 167.2 103 79.6
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 2.4e-39 166.4 123 67.5
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 5.4e-39 165.2 153 58.2
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.2e-38 164.1 103 80.6
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 1.6e-38 163.7 103 77.7
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 5.9e-38 161.8 105 77.1
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 1.5e-36 157.1 186 46.8
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 1.5e-36 157.1 115 71.3
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 5.5e-36 155.2 140 57.1
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 9.4e-36 154.5 113 68.1
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 8.0e-35 151.4 92 79.3
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 3.4e-33 146.0 112 63.4
C09p73560 Brassica napus HOM05D011718 ORTHO05D013955 8.3e-32 141.4 73 91.8
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 3.1e-31 139.4 83 81.9
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.5e-30 136.0 83 80.7
BcaC06g32043 Brassica carinata HOM05D011718 ORTHO05D013955 3.8e-29 132.5 64 98.4
BolC9t60087H Brassica oleracea HOM05D011718 ORTHO05D013955 3.8e-29 132.5 64 98.4
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.8e-29 132.5 84 77.4
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 5.0e-29 132.1 110 59.1
BolC9t60088H Brassica oleracea HOM05D011718 ORTHO05D013955 7.3e-28 128.3 66 90.9
A10p32720 Brassica napus HOM05D011718 ORTHO05D013955 4.7e-27 125.6 66 89.4
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.5e-25 120.6 96 58.3
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.5e-25 120.6 74 79.7
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.0e-25 120.2 78 76.9
BraA03t09489Z Brassica rapa HOM05D011718 ORTHO05D013955 2.4e-23 113.2 67 80.6
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 2.4e-23 113.2 94 66.0
C03p01380 Brassica napus HOM05D011718 ORTHO05D013955 9.2e-23 111.3 67 79.1
A03p01070 Brassica napus HOM05D011718 ORTHO05D013955 2.0e-22 110.2 64 81.2
BolC3t12696H Brassica oleracea HOM05D011718 ORTHO05D013955 2.0e-22 110.2 64 81.2
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.9e-22 108.6 64 82.8
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.9e-22 108.6 83 71.1
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.3e-21 107.5 80 62.5
CARHR210140 Cardamine hirsuta HOM05D011718 ORTHO05D013955 3.9e-21 105.9 64 81.2
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 2.1e-19 100.1 101 54.5
AT5G03210 Arabidopsis thaliana HOM05D011718 ORTHO05D013955 4.0e-18 95.9 74 71.6
BolC2t06088H Brassica oleracea HOM05D011718 ORTHO05D013955 2.6e-17 93.2 56 76.8
Carub.0006s0200 Capsella rubella HOM05D011718 ORTHO05D013955 2.6e-17 93.2 66 77.3
AL6G12500 Arabidopsis lyrata HOM05D011718 ORTHO05D013955 4.4e-17 92.4 66 72.7
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 2.7e-14 83.2 103 42.7
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 2.3e-13 80.1 154 32.5
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 3.0e-13 79.7 113 47.8
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 1.5e-12 77.4 54 66.7
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 1.5e-12 77.4 54 66.7
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.3e-12 76.3 78 57.7
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 5.2e-10 68.9 69 55.1
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 5.2e-10 68.9 131 34.4
Aa31LG1G21880 Aethionema arabicum HOM05D011718 ORTHO05D013955 3.4e-09 66.2 55 63.6


User provided reference genes

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