Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p69960 Brassica napus HOM05D001045 ORTHO05D042049 2.5e-59 231.9 114 100.0
BolC9t59738H Brassica oleracea HOM05D001045 ORTHO05D042049 2.5e-59 231.9 114 100.0
BolC3t20326H Brassica oleracea HOM05D001045 ORTHO05D001542 1.2e-56 223.0 114 96.5
BcaC04g24212 Brassica carinata HOM05D001045 ORTHO05D001542 2.7e-13 79.0 44 77.3
C09p56790 Brassica napus HOM05D001045 ORTHO05D001542 2.7e-13 79.0 44 77.3
BolC9t58533H Brassica oleracea HOM05D001045 ORTHO05D001542 2.7e-13 79.0 44 77.3
Thhalv10014599m.g Eutrema salsugineum HOM05D001045 ORTHO05D001542 2.7e-13 79.0 44 77.3
BcaC03g13681 Brassica carinata HOM05D001045 ORTHO05D001542 3.5e-13 78.6 66 59.1
BNapus_Darmor_BZH_scaffold_38p02360 Brassica napus HOM05D001045 ORTHO05D001542 3.5e-13 78.6 66 59.1
BolC2t06959H Brassica oleracea HOM05D001045 ORTHO05D001542 3.5e-13 78.6 66 59.1
BcaB01g04858 Brassica carinata HOM05D001045 ORTHO05D001542 4.6e-13 78.2 44 77.3
A03p09500 Brassica napus HOM05D001045 ORTHO05D001542 1.0e-12 77.0 44 77.3
A10p20200 Brassica napus HOM05D001045 ORTHO05D001542 1.3e-12 76.6 66 57.6
BraA10t44091Z Brassica rapa HOM05D001045 ORTHO05D001542 1.3e-12 76.6 66 57.6
Sp6g24890 Schrenkiella parvula HOM05D001045 ORTHO05D001542 2.3e-12 75.9 44 72.7
AL6G31020 Arabidopsis lyrata HOM05D001045 ORTHO05D001542 3.0e-12 75.5 44 75.0
BcaB05g23383 Brassica carinata HOM05D001045 ORTHO05D001542 3.0e-12 75.5 44 75.0
BcaB01g05149 Brassica carinata HOM05D001045 ORTHO05D001542 8.7e-12 73.9 44 75.0
BraA03t10268Z Brassica rapa HOM05D001045 ORTHO05D001542 8.7e-12 73.9 44 75.0
A02p05590 Brassica napus HOM05D001045 ORTHO05D001542 1.9e-11 72.8 44 72.7
BraA02t05511Z Brassica rapa HOM05D001045 ORTHO05D001542 1.9e-11 72.8 44 72.7
Carub.0006s1786 Capsella rubella HOM05D001045 ORTHO05D001542 1.9e-11 72.8 44 72.7
TAR623G1682 Trochodendron aralioides HOM05D001045 ORTHO05D001542 1.9e-11 72.8 47 63.8
C03p11080 Brassica napus HOM05D001045 ORTHO05D001542 2.5e-11 72.4 44 72.7
BolC3t13578H Brassica oleracea HOM05D001045 ORTHO05D001542 2.5e-11 72.4 44 72.7
AL6G22890 Arabidopsis lyrata HOM05D001045 ORTHO05D001542 1.3e-10 70.1 44 68.2
A10p25690 Brassica napus HOM05D001045 ORTHO05D001542 1.6e-10 69.7 44 68.2
C09p64760 Brassica napus HOM05D001045 ORTHO05D001542 1.6e-10 69.7 44 68.2
BolC9t59307H Brassica oleracea HOM05D001045 ORTHO05D001542 1.6e-10 69.7 44 68.2
AT5G12110 Arabidopsis thaliana HOM05D001045 ORTHO05D001542 2.1e-10 69.3 44 68.2
TAR369G0065 Trochodendron aralioides HOM05D001045 ORTHO05D001542 2.8e-10 68.9 42 66.7
BraA10t44634Z Brassica rapa HOM05D001045 ORTHO05D001542 4.8e-10 68.2 44 65.9
Carub.0006s1062 Capsella rubella HOM05D001045 ORTHO05D001542 1.1e-09 67.0 43 65.1
Aa31LG3G15120 Aethionema arabicum HOM05D001045 ORTHO05D001542 1.8e-09 66.2 44 65.9
Ca_06173_v3 Cicer arietinum L. HOM05D001045 ORTHO05D001542 1.8e-09 66.2 46 63.0
HanXRQChr13g0401491 Helianthus annuus HOM05D001045 ORTHO05D001542 1.8e-09 66.2 65 53.8
AT5G19510 Arabidopsis thaliana HOM05D001045 ORTHO05D001542 2.4e-09 65.9 44 68.2
Manes.01G176200 Manihot esculenta HOM05D001045 ORTHO05D001542 2.4e-09 65.9 46 60.9
CARHR193390 Cardamine hirsuta HOM05D001045 ORTHO05D001542 3.1e-09 65.5 44 68.2
Eucgr.J00657 Eucalyptus grandis HOM05D001045 ORTHO05D001542 3.1e-09 65.5 46 56.5
Nn7g37064 Nelumbo nucifera HOM05D001045 ORTHO05D001542 3.1e-09 65.5 42 64.3
RcHm_v2.0_Chr4g0419721 Rosa chinensis HOM05D001045 ORTHO05D001542 4.0e-09 65.1 44 59.1
Sc09g0001190 Simmondsia chinensis HOM05D001045 ORTHO05D001542 4.0e-09 65.1 42 61.9
Glyma.14G039100 Glycine max HOM05D001045 ORTHO05D001542 6.9e-09 64.3 47 57.4
Phvul.008G204800 Phaseolus vulgaris HOM05D001045 ORTHO05D001542 6.9e-09 64.3 47 57.4
BcaNung06327 Brassica carinata HOM05D001045 ORTHO05D001542 9.0e-09 63.9 44 61.4
CSS0019520 Camellia sinensis var. sinensis HOM05D001045 ORTHO05D001542 9.0e-09 63.9 48 62.5
Glyma.02G276600 Glycine max HOM05D001045 ORTHO05D001542 9.0e-09 63.9 47 57.4
HanXRQChr06g0164571 Helianthus annuus HOM05D001045 ORTHO05D001542 9.0e-09 63.9 65 49.2
Gohir.D13G224400 Gossypium hirsutum HOM05D001045 ORTHO05D001542 1.2e-08 63.5 46 54.3
Gorai.013G255200 Gossypium raimondii HOM05D001045 ORTHO05D001542 1.2e-08 63.5 46 54.3
Haze_23542 Corylus avellana HOM05D001045 ORTHO05D001542 1.5e-08 63.2 50 58.0
Psat0s1231g0040 Pisum sativum HOM05D001045 ORTHO05D001542 1.5e-08 63.2 46 58.7
Hund07404 Selenicereus undatus HOM05D001045 ORTHO05D001542 1.5e-08 63.2 42 59.5
VMungo0647G0939 Vigna mungo HOM05D001045 ORTHO05D001542 2.0e-08 62.8 47 57.4
Atru.chr3.2826 Acer truncatum HOM05D001045 ORTHO05D001542 2.6e-08 62.4 42 61.9
Lalb_Chr17g0347711 Lupinus albus HOM05D001045 ORTHO05D001542 2.6e-08 62.4 47 53.2
Cfa010155 Carpinus fangiana HOM05D001045 ORTHO05D001542 3.4e-08 62.0 50 56.0
Nn2g14587 Nelumbo nucifera HOM05D001045 ORTHO05D001542 4.5e-08 61.6 42 59.5
Thecc.09G256800 Theobroma cacao HOM05D001045 ORTHO05D001542 4.5e-08 61.6 46 52.2
GSVIVG01037374001 Vitis vinifera HOM05D001045 ORTHO05D001542 4.5e-08 61.6 48 56.2
FvH4_4g13950 Fragaria vesca HOM05D001045 ORTHO05D001542 5.8e-08 61.2 44 56.8
FAN22G2283 Fragaria x ananassa HOM05D001045 ORTHO05D001542 5.8e-08 61.2 44 56.8
AUR62000243 Chenopodium quinoa HOM05D001045 ORTHO05D001542 7.6e-08 60.8 42 57.1
AUR62006589 Chenopodium quinoa HOM05D001045 ORTHO05D001542 7.6e-08 60.8 42 57.1
Duzib150G0472 Durio zibethinus HOM05D001045 ORTHO05D001542 7.6e-08 60.8 46 50.0
Gohir.A13G220400 Gossypium hirsutum HOM05D001045 ORTHO05D001542 7.6e-08 60.8 46 52.2
TWI75G0894 Tripterygium wilfordii HOM05D001045 ORTHO05D001542 7.6e-08 60.8 46 54.3
Lsat_1_v5_gn_1_50000 Lactuca sativa HOM05D001045 ORTHO05D001542 9.9e-08 60.5 47 57.4
Lalb_Chr04g0249441 Lupinus albus HOM05D001045 ORTHO05D001542 9.9e-08 60.5 46 54.3
Sc16g0010830 Simmondsia chinensis HOM05D001045 ORTHO05D001542 9.9e-08 60.5 42 54.8
Ciclev10016592m.g Citrus clementina HOM05D001045 ORTHO05D001542 1.3e-07 60.1 42 54.8
FAN07G1107 Fragaria x ananassa HOM05D001045 ORTHO05D001542 1.7e-07 59.7 42 57.1
FAN17G1276 Fragaria x ananassa HOM05D001045 ORTHO05D001542 1.7e-07 59.7 42 57.1
Lsat_1_v5_gn_6_26180 Lactuca sativa HOM05D001045 ORTHO05D001542 1.7e-07 59.7 47 57.4
Lj2C827G11 Lonicera japonica HOM05D001045 ORTHO05D001542 1.7e-07 59.7 47 59.6
TPR.G16417 Trifolium pratense HOM05D001045 ORTHO05D001542 1.7e-07 59.7 46 56.5
arahy.Tifrunner.gnm1.ann1.SDD8BX Arachis hypogaea HOM05D001045 ORTHO05D001542 2.2e-07 59.3 46 54.3
Cpa.g.sc34.208 Carica papaya HOM05D001045 ORTHO05D001542 2.2e-07 59.3 46 54.3
DCAR_018945 Daucus carota HOM05D001045 ORTHO05D001542 2.2e-07 59.3 39 66.7
FAN12G1132 Fragaria x ananassa HOM05D001045 ORTHO05D001542 2.2e-07 59.3 44 54.5
Phvul.006G019800 Phaseolus vulgaris HOM05D001045 ORTHO05D001542 2.2e-07 59.3 42 54.8
TWI79G1542 Tripterygium wilfordii HOM05D001045 ORTHO05D001542 2.2e-07 59.3 46 52.2
Actinidia12282 Actinidia chinensis HOM05D001045 ORTHO05D001542 2.9e-07 58.9 47 55.3
Actinidia22481 Actinidia chinensis HOM05D001045 ORTHO05D001542 2.9e-07 58.9 47 55.3
Dinv35900 Davidia involucrata HOM05D001045 ORTHO05D001542 3.8e-07 58.5 47 55.3
Glyma.13G073200 Glycine max HOM05D001045 ORTHO05D001542 3.8e-07 58.5 80 36.2
Potri.001G224700 Populus trichocarpa HOM05D001045 ORTHO05D001542 3.8e-07 58.5 65 44.6
CiPaw.14G107700 Carya illinoinensis HOM05D001045 ORTHO05D001542 4.9e-07 58.2 46 52.2
Lalb_Chr15g0080201 Lupinus albus HOM05D001045 ORTHO05D001542 4.9e-07 58.2 46 52.2
MD02G1099500 Malus domestica HOM05D001045 ORTHO05D001542 6.4e-07 57.8 46 50.0
Sabra16G0133400 Salix brachista HOM05D001045 ORTHO05D001542 6.4e-07 57.8 71 39.4
THA.LOC104800475 Tarenaya hassleriana HOM05D001045 ORTHO05D001542 6.4e-07 57.8 48 52.1
EL10Ac4g10055 Beta vulgaris HOM05D001045 ORTHO05D001542 8.4e-07 57.4 67 38.8
Lj6g0023810 Lotus japonicus HOM05D001045 ORTHO05D001542 8.4e-07 57.4 42 52.4
ECA248G0174 Erigeron canadensis HOM05D001045 ORTHO05D001542 1.1e-06 57.0 65 46.2
MD02G1271700 Malus domestica HOM05D001045 ORTHO05D001542 1.1e-06 57.0 46 52.2
Medtr5g088660 Medicago truncatula HOM05D001045 ORTHO05D001542 1.4e-06 56.6 46 54.3
THA.LOC104816957 Tarenaya hassleriana HOM05D001045 ORTHO05D001542 1.4e-06 56.6 48 50.0
arahy.Tifrunner.gnm1.ann1.E3HYWR Arachis hypogaea HOM05D001045 ORTHO05D001542 2.4e-06 55.8 46 50.0
MBI13_g36812_MAGBIO Magnolia biondii HOM05D001045 ORTHO05D001542 2.4e-06 55.8 43 51.2
PSO384G2374 Papaver somniferum HOM05D001045 ORTHO05D001542 2.4e-06 55.8 39 59.0
Aqoxy7G01944 Aquilegia oxysepala HOM05D001045 ORTHO05D001542 3.2e-06 55.5 42 57.1
CANSAT54G1902 Cannabis sativa HOM05D001045 ORTHO05D001542 4.2e-06 55.1 42 52.4
Hma1.2p1_1711F.1_g298700 Hydrangea macrophylla HOM05D001045 ORTHO05D001542 4.2e-06 55.1 47 53.2
Prupe.5G005100 Prunus persica HOM05D001045 ORTHO05D001542 4.2e-06 55.1 46 52.2
Gohir.A05G071900 Gossypium hirsutum HOM05D001045 ORTHO05D001542 5.5e-06 54.7 46 47.8
Gohir.D05G074700 Gossypium hirsutum HOM05D001045 ORTHO05D001542 5.5e-06 54.7 46 47.8
Gorai.009G076000 Gossypium raimondii HOM05D001045 ORTHO05D001542 5.5e-06 54.7 46 47.8
Potri.009G018600 Populus trichocarpa HOM05D001045 ORTHO05D001542 5.5e-06 54.7 46 50.0
vmacro04090 Vaccinium macrocarpon HOM05D001045 ORTHO05D001542 5.5e-06 54.7 46 54.3
MSTRG.17647 Avicennia marina HOM05D001045 ORTHO05D001542 9.3e-06 53.9 44 54.5
Rhsim13G0203400 Rhododendron simsii HOM05D001045 ORTHO05D001542 9.3e-06 53.9 47 53.2
HPP92_001658 Vanilla planifolia HOM05D001045 ORTHO05D001542 9.3e-06 53.9 80 42.5


User provided reference genes

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