Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 9.7e-171 603.6 351 100.0
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 3.8e-167 591.7 351 94.9
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 5.0e-159 564.7 339 93.8
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 5.0e-159 564.7 339 93.8
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 7.0e-153 544.3 334 88.9
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 5.2e-148 528.1 355 81.7
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.7e-146 523.1 341 88.9
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 2.5e-134 482.6 348 77.0
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 1.8e-132 476.5 332 78.9
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 5.8e-131 471.5 332 78.9
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 2.9e-130 469.2 327 78.6
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 1.4e-129 466.8 356 78.4
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 4.1e-129 465.3 337 81.9
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 4.6e-128 461.8 335 81.8
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 1.0e-127 460.7 337 80.7
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 8.6e-127 457.6 335 76.7
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 4.3e-126 455.3 340 75.9
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 6.6e-111 404.8 339 68.4
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 1.6e-104 383.6 254 75.6
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 3.0e-103 379.4 260 73.1
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 1.1e-102 377.5 257 74.3
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 2.5e-102 376.3 257 74.3
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 2.5e-102 376.3 264 73.9
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 2.5e-102 376.3 252 75.0
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 3.3e-102 375.9 254 73.2
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 5.6e-102 375.2 259 70.7
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 7.3e-102 374.8 267 71.2
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 9.6e-102 374.4 266 71.1
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 1.3e-101 374.0 317 64.4
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 1.6e-101 373.6 257 73.5
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 1.6e-101 373.6 266 72.6
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.6e-101 373.6 257 73.9
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 2.8e-101 372.9 251 74.5
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 8.1e-101 371.3 251 73.7
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 1.1e-100 370.9 253 72.7
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 2.4e-100 369.8 250 73.2
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 2.4e-100 369.8 265 70.6
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 3.1e-100 369.4 254 71.3
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 3.1e-100 369.4 254 71.3
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 4.0e-100 369.0 261 71.3
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 5.3e-100 368.6 319 61.1
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 5.3e-100 368.6 327 61.8
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 5.3e-100 368.6 252 74.2
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.0e-99 366.7 261 69.3
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 2.0e-99 366.7 251 73.3
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 2.6e-99 366.3 252 72.6
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 7.6e-99 364.8 320 68.4
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.7e-98 363.6 244 73.4
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 1.7e-98 363.6 254 68.9
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 2.2e-98 363.2 262 69.8
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 2.9e-98 362.8 254 71.7
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 3.8e-98 362.5 258 70.9
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 3.8e-98 362.5 244 72.1
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.4e-98 361.7 254 71.7
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 8.4e-98 361.3 337 65.0
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 8.4e-98 361.3 251 70.1
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 1.1e-97 360.9 263 68.4
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 1.1e-97 360.9 354 57.6
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 1.4e-97 360.5 251 72.1
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 2.4e-97 359.8 261 69.3
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 2.4e-97 359.8 355 58.9
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 9.3e-97 357.8 262 67.9
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 2.7e-96 356.3 248 71.0
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 2.7e-96 356.3 253 69.2
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 3.5e-96 355.9 251 69.7
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 6.0e-96 355.1 254 70.1
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 7.8e-96 354.8 258 69.0
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 7.8e-96 354.8 261 67.8
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 1.3e-95 354.0 261 68.6
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 1.3e-95 354.0 256 69.9
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 1.3e-95 354.0 258 68.2
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 2.3e-95 353.2 254 69.3
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 5.1e-95 352.1 367 56.7
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 8.7e-95 351.3 259 68.3
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 1.1e-94 350.9 252 69.8
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 1.5e-94 350.5 259 68.0
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 1.5e-94 350.5 324 65.7
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 1.9e-94 350.1 259 68.0
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 2.5e-94 349.7 256 68.8
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 3.3e-94 349.4 261 67.4
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 1.6e-93 347.1 243 71.2
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 1.6e-93 347.1 243 70.8
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 4.8e-93 345.5 239 71.5
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 3.1e-92 342.8 244 68.4
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 6.9e-92 341.7 265 66.8
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 9.0e-92 341.3 340 57.9
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 1.2e-91 340.9 257 66.1
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 1.5e-91 340.5 254 66.5
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 3.4e-91 339.3 250 66.8
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 5.8e-91 338.6 300 60.0
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 5.8e-91 338.6 253 68.4
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 4.9e-90 335.5 254 66.1
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.4e-89 334.0 254 66.1
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.9e-89 333.6 263 64.3
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.9e-89 333.6 263 64.3
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 2.3e-87 326.6 252 66.3
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 5.3e-84 315.5 319 53.9
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 1.9e-81 307.0 211 73.5
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 7.6e-75 285.0 198 70.7
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 1.9e-70 270.4 257 57.2
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 2.8e-69 266.5 254 57.1
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 3.7e-69 266.2 265 52.1
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 4.8e-69 265.8 251 54.2
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 1.4e-68 264.2 255 51.8
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 2.5e-65 253.4 259 53.3
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 3.2e-57 226.5 249 48.6
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 1.6e-56 224.2 165 68.5
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 3.6e-56 223.0 192 58.3
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 3.9e-55 219.5 134 79.1
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.2e-50 203.8 165 63.6
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 3.3e-46 189.9 118 81.4
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 4.4e-46 189.5 187 55.1
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 2.4e-44 183.7 141 66.0
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 5.9e-43 179.1 166 57.2
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.5e-41 173.7 172 55.2
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 4.4e-38 162.9 165 55.8
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 3.7e-37 159.8 109 74.3
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 7.0e-36 155.6 109 71.6
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 1.6e-35 154.5 166 54.8
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 7.7e-35 152.1 179 49.7
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 4.9e-29 132.9 94 68.1
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.2e-27 128.3 96 65.6
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.5e-27 126.7 89 69.7
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 3.8e-26 123.2 74 78.4
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 2.5e-25 120.6 74 77.0
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 3.6e-24 116.7 89 59.6
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 1.0e-23 115.2 244 30.7
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 4.4e-22 109.8 71 73.2
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 1.2e-19 101.7 89 61.8
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 3.5e-19 100.1 85 55.3
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.5e-17 94.7 218 35.3
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 1.9e-17 94.4 72 61.1
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 5.6e-17 92.8 80 52.5
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 9.5e-17 92.0 56 78.6
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 3.6e-16 90.1 50 80.0
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.2e-14 85.1 55 72.7
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 7.5e-14 82.4 162 34.6
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 4.9e-13 79.7 96 51.0
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 8.3e-13 79.0 126 38.9
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.4e-12 78.2 92 47.8
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 1.7e-10 71.2 149 33.6
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 1.6e-08 64.7 37 81.1
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 2.1e-08 64.3 41 65.9
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 1.4e-07 61.6 70 45.7
COL.COLO4_28032 Corchorus olitorius HOM05D001335 ORTHO05D001184 5.8e-06 56.2 124 33.1


User provided reference genes

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