Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 1.5e-300 1035.4 520 100.0
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 9.0e-298 1026.2 520 99.0
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 5.1e-293 1010.4 520 97.7
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 4.9e-288 993.8 511 97.5
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.3e-283 979.2 521 94.4
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 3.4e-281 971.1 519 94.0
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 6.5e-280 966.8 520 93.1
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.2e-278 962.6 520 92.9
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 2.3e-277 958.4 520 92.1
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 2.5e-276 954.9 520 91.9
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 3.3e-276 954.5 521 92.5
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 3.9e-261 904.4 537 85.3
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 3.8e-248 861.3 520 83.5
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 3.4e-244 848.2 522 83.5
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 5.0e-240 834.3 482 89.2
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 8.0e-230 800.4 499 84.6
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 4.1e-226 788.1 520 79.4
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 5.9e-225 784.3 519 75.5
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 2.9e-224 781.9 480 79.8
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 2.9e-224 781.9 525 74.5
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 4.3e-223 778.1 471 79.6
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 7.3e-223 777.3 516 75.6
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 9.5e-223 776.9 516 75.4
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.2e-222 776.5 471 80.5
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 1.6e-222 776.2 491 77.8
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 1.6e-222 776.2 492 77.4
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 2.1e-222 775.8 476 79.4
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.8e-222 775.4 469 80.0
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 6.1e-222 774.2 471 80.3
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.0e-221 773.5 523 74.8
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.0e-221 773.5 510 76.3
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 1.4e-221 773.1 511 74.6
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.8e-221 772.7 521 74.5
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 3.1e-221 771.9 480 79.2
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 3.1e-221 771.9 471 78.8
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 4.0e-221 771.5 523 74.6
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 4.0e-221 771.5 503 74.8
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 4.0e-221 771.5 519 73.8
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 5.2e-221 771.2 519 74.2
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 1.2e-220 770.0 524 74.2
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.5e-220 769.6 460 80.2
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 2.0e-220 769.2 461 79.8
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 4.4e-220 768.1 461 79.2
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 5.8e-220 767.7 519 72.8
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 7.5e-220 767.3 522 73.9
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 1.3e-219 766.5 523 72.7
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.2e-219 765.8 513 73.9
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 2.2e-219 765.8 474 77.6
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 2.2e-219 765.8 516 75.4
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 4.9e-219 764.6 502 74.7
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 6.4e-219 764.2 514 73.9
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 1.1e-218 763.5 516 73.6
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 1.4e-218 763.1 521 74.5
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 1.4e-218 763.1 506 76.1
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 1.9e-218 762.7 537 71.5
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 4.1e-218 761.5 463 79.5
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 5.4e-218 761.1 459 79.1
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 5.4e-218 761.1 459 80.6
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 9.2e-218 760.4 517 74.1
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 1.2e-217 760.0 459 80.4
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 2.0e-217 759.2 520 72.5
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 2.7e-217 758.8 460 78.7
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 4.6e-217 758.1 462 78.4
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 7.8e-217 757.3 461 78.5
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 1.7e-216 756.1 469 76.8
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 2.3e-216 755.7 513 72.9
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 2.3e-216 755.7 516 72.3
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 5.0e-216 754.6 508 73.2
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 8.6e-216 753.8 460 79.1
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 1.5e-215 753.1 509 73.1
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 2.5e-215 752.3 462 77.1
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 5.6e-215 751.1 487 73.9
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 7.3e-215 750.7 516 72.1
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 7.3e-215 750.7 514 73.5
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 7.3e-215 750.7 512 71.9
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 9.5e-215 750.4 502 72.3
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.6e-214 749.6 459 78.0
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.6e-214 749.6 483 76.2
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 2.1e-214 749.2 516 71.3
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 2.8e-214 748.8 466 77.9
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 2.8e-214 748.8 517 71.6
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 2.8e-214 748.8 504 72.2
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.6e-214 748.4 483 76.0
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 4.7e-214 748.0 459 77.6
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 4.7e-214 748.0 508 74.0
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 1.1e-213 746.9 463 77.3
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.1e-213 745.3 480 76.0
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 5.2e-213 744.6 460 78.0
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 1.5e-212 743.0 567 67.5
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 3.4e-212 741.9 535 70.1
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 4.4e-212 741.5 493 73.4
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.8e-212 741.1 493 73.6
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 7.5e-212 740.7 514 70.8
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 1.7e-211 739.6 517 75.8
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 6.4e-211 737.6 529 70.3
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 6.4e-211 737.6 511 72.2
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 4.1e-210 734.9 524 70.4
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 7.1e-210 734.2 510 70.8
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 2.1e-209 732.6 549 67.8
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 3.5e-209 731.9 459 76.0
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 1.7e-208 729.6 485 73.2
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 1.9e-207 726.1 473 81.4
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 2.8e-206 722.2 485 72.0
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 6.2e-206 721.1 461 76.1
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 9.2e-202 707.2 487 73.5
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 4.6e-201 704.9 514 69.1
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 1.7e-200 703.0 463 72.8
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 8.6e-200 700.7 464 72.2
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 2.1e-198 696.0 507 70.2
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 3.1e-197 692.2 465 70.1
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 8.9e-197 690.6 468 69.7
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 3.4e-196 688.7 460 72.8
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 2.1e-193 679.5 410 78.8
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 7.8e-193 677.6 450 72.9
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 8.7e-192 674.1 478 68.2
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 4.3e-191 671.8 465 71.0
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 2.6e-188 662.5 438 77.2
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 5.8e-188 661.4 437 76.4
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 7.1e-186 654.4 427 77.8
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 3.5e-185 652.1 519 66.5
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.3e-184 649.4 455 69.9
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 5.1e-184 648.3 431 72.6
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 3.5e-177 625.5 453 66.0
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 8.7e-176 620.9 373 78.0
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 9.6e-175 617.5 373 76.9
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 1.1e-173 614.0 392 78.3
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 2.3e-168 596.3 712 47.2
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 3.7e-158 562.4 341 82.7
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 1.1e-157 560.8 385 78.2
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 3.7e-150 535.8 392 70.4
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 4.3e-114 416.0 258 84.1
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 3.0e-112 409.8 312 68.9
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 5.9e-108 395.6 237 78.9
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 2.3e-99 367.1 292 62.0
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 2.1e-97 360.5 453 41.7
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 5.6e-90 335.9 453 39.7
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.0e-87 327.4 455 39.1
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 5.1e-83 312.8 201 75.1
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 2.4e-77 293.9 228 64.9
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 1.4e-61 241.5 165 77.0
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 1.9e-61 241.1 134 89.6
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 7.1e-61 239.2 384 39.8
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 6.0e-60 236.1 249 55.8
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 7.9e-60 235.7 131 84.0
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 6.9e-56 222.6 192 62.0
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 1.3e-51 208.4 170 58.8
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 1.6e-49 201.4 196 54.6
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 7.9e-44 182.6 373 31.9
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 3.0e-43 180.6 122 62.3
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.3e-41 175.3 98 84.7
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 1.9e-37 161.4 91 84.6
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 1.5e-34 151.8 93 84.9
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 3.3e-34 150.6 122 59.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 1.3e-33 148.7 74 94.6
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 3.8e-30 137.1 80 76.2
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 2.1e-28 131.3 293 29.7
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 4.4e-26 123.6 100 62.0
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 9.7e-26 122.5 130 41.5
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 6.3e-25 119.8 120 55.0
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 1.4e-24 118.6 60 93.3
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 8.8e-11 72.8 47 70.2
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 8.8e-11 72.8 43 74.4
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 8.8e-11 72.8 41 78.0
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 3.7e-09 67.4 102 46.1
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 5.9e-07 60.1 35 77.1
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 5.0e-06 57.0 38 68.4
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 8.5e-06 56.2 48 60.4


User provided reference genes

Program Settings