Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p65820 Brassica napus HOM05D006351 ORTHO05D007796 0.0e+00 1158.7 600 100.0
BolC9t59403H Brassica oleracea HOM05D006351 ORTHO05D007796 3.7e-311 1070.8 600 94.3
BcaC04g19265 Brassica carinata HOM05D006351 ORTHO05D007796 2.5e-307 1058.1 588 93.2
A10p26650 Brassica napus HOM05D006351 ORTHO05D007796 2.8e-303 1044.6 588 93.2
BraA10t44723Z Brassica rapa HOM05D006351 ORTHO05D007796 1.1e-294 1016.1 593 91.2
Sp6g32460 Schrenkiella parvula HOM05D006351 ORTHO05D007796 1.4e-249 866.3 608 77.3
Thhalv10013026m.g Eutrema salsugineum HOM05D006351 ORTHO05D007796 1.7e-223 779.6 603 70.0
AL6G21650 Arabidopsis lyrata HOM05D006351 ORTHO05D007796 4.2e-222 775.0 603 70.3
Carub.0006s0954 Capsella rubella HOM05D006351 ORTHO05D007796 7.4e-211 737.6 606 67.0
AT5G11030 Arabidopsis thaliana HOM05D006351 ORTHO05D007796 1.4e-209 733.4 609 67.7
CARHR202260 Cardamine hirsuta HOM05D006351 ORTHO05D007796 7.9e-181 637.9 486 70.2
THA.LOC104815006 Tarenaya hassleriana HOM05D006351 ORTHO05D007796 1.0e-172 610.9 608 56.4
Aa31LG3G16100 Aethionema arabicum HOM05D006351 ORTHO05D007796 2.6e-171 606.3 604 58.8
Dinv03414 Davidia involucrata HOM05D006351 ORTHO05D007796 5.8e-139 498.8 626 46.2
Thecc.09G019400 Theobroma cacao HOM05D006351 ORTHO05D007796 4.7e-133 479.2 615 44.1
MD15G1131200 Malus domestica HOM05D006351 ORTHO05D007796 1.2e-131 474.6 577 48.4
Sabra06G0202800 Salix brachista HOM05D006351 ORTHO05D007796 1.2e-131 474.6 604 45.4
Potri.006G259600 Populus trichocarpa HOM05D006351 ORTHO05D007796 3.7e-130 469.5 606 44.7
Manes.03G011600 Manihot esculenta HOM05D006351 ORTHO05D007796 8.3e-130 468.4 604 45.0
GSVIVG01035918001 Vitis vinifera HOM05D006351 ORTHO05D007796 9.2e-129 464.9 617 42.9
Prupe.1G486500 Prunus persica HOM05D006351 ORTHO05D007796 1.6e-128 464.2 608 46.1
Atru.chr7.2503_Atru.chr7.2504 Acer truncatum HOM05D006351 ORTHO05D007796 6.6e-127 458.8 610 42.8
TWI34G1294 Tripterygium wilfordii HOM05D006351 ORTHO05D007796 6.6e-127 458.8 619 44.4
Duzib150G0289 Durio zibethinus HOM05D006351 ORTHO05D007796 1.1e-126 458.0 607 43.3
QL02p020121 Quercus lobata HOM05D006351 ORTHO05D007796 2.5e-126 456.8 669 41.4
CiPaw.08G008200 Carya illinoinensis HOM05D006351 ORTHO05D007796 3.3e-126 456.4 606 44.1
TAR625G1335 Trochodendron aralioides HOM05D006351 ORTHO05D007796 3.6e-125 453.0 606 43.7
CANSAT54G0019 Cannabis sativa HOM05D006351 ORTHO05D007796 3.1e-124 449.9 602 43.9
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 5.2e-124 449.1 589 43.5
Haze_21455 Corylus avellana HOM05D006351 ORTHO05D007796 1.2e-123 448.0 608 42.9
Psat6g028600 Pisum sativum HOM05D006351 ORTHO05D007796 9.9e-123 444.9 605 42.3
VMungo0647G0679 Vigna mungo HOM05D006351 ORTHO05D007796 1.7e-122 444.1 604 42.4
Lj5g0002049 Lotus japonicus HOM05D006351 ORTHO05D007796 2.9e-122 443.4 603 43.1
Ciclev10007789m.g Citrus clementina HOM05D006351 ORTHO05D007796 3.7e-122 443.0 606 42.4
Medtr4g014840 Medicago truncatula HOM05D006351 ORTHO05D007796 8.3e-122 441.8 584 42.8
Gohir.A07G030500 Gossypium hirsutum HOM05D006351 ORTHO05D007796 5.4e-121 439.1 613 43.1
Sopen01g038480 Solanum pennellii HOM05D006351 ORTHO05D007796 5.4e-121 439.1 594 43.1
CsaV3_4G036840 Cucumis sativus L. HOM05D006351 ORTHO05D007796 7.1e-121 438.7 602 43.2
Phvul.001G047200 Phaseolus vulgaris HOM05D006351 ORTHO05D007796 1.6e-120 437.6 606 42.2
Solyc01g094670.4 Solanum lycopersicum HOM05D006351 ORTHO05D007796 7.8e-120 435.3 594 42.6
Oeu028190.1 Olea europaea HOM05D006351 ORTHO05D007796 1.0e-119 434.9 588 42.2
Gohir.D07G034400 Gossypium hirsutum HOM05D006351 ORTHO05D007796 3.0e-119 433.3 613 42.3
arahy.Tifrunner.gnm1.ann1.52204A Arachis hypogaea HOM05D006351 ORTHO05D007796 1.9e-118 430.6 630 41.1
Peaxi162Scf00116g00510 Petunia axillaris HOM05D006351 ORTHO05D007796 4.3e-118 429.5 594 42.8
PGR119G2225 Punica granatum HOM05D006351 ORTHO05D007796 9.5e-118 428.3 584 43.2
TPR.G32564 Trifolium pratense HOM05D006351 ORTHO05D007796 9.5e-118 428.3 590 43.2
arahy.Tifrunner.gnm1.ann1.DQM65W Arachis hypogaea HOM05D006351 ORTHO05D007796 1.6e-117 427.6 648 40.6
MSTRG.9683 Avicennia marina HOM05D006351 ORTHO05D007796 2.1e-117 427.2 602 41.2
arahy.Tifrunner.gnm1.ann1.5RBZ70 Arachis hypogaea HOM05D006351 ORTHO05D007796 2.8e-117 426.8 630 41.3
Nn8g39723 Nelumbo nucifera HOM05D006351 ORTHO05D007796 3.6e-117 426.4 589 40.7
vmacro11222 Vaccinium macrocarpon HOM05D006351 ORTHO05D007796 6.2e-117 425.6 627 40.5
Eucgr.C01685 Eucalyptus grandis HOM05D006351 ORTHO05D007796 1.1e-116 424.9 603 42.0
FvH4_2g28280 Fragaria vesca HOM05D006351 ORTHO05D007796 2.4e-116 423.7 543 44.2
Lalb_Chr22g0361451 Lupinus albus HOM05D006351 ORTHO05D007796 4.0e-116 422.9 614 41.9
DCAR_018801 Daucus carota HOM05D006351 ORTHO05D007796 6.8e-116 422.2 620 39.4
Cfa013099 Carpinus fangiana HOM05D006351 ORTHO05D007796 2.0e-115 420.6 610 41.6
Actinidia22310 Actinidia chinensis HOM05D006351 ORTHO05D007796 7.6e-115 418.7 617 40.4
SalBow3G2878 Salvia bowleyana HOM05D006351 ORTHO05D007796 6.4e-114 415.6 603 39.5
Sc06g0000450 Simmondsia chinensis HOM05D006351 ORTHO05D007796 1.4e-113 414.5 611 39.6
ClCG05G016570 Citrullus lanatus HOM05D006351 ORTHO05D007796 1.9e-113 414.1 653 39.8
RcHm_v2.0_Chr6g0297191 Rosa chinensis HOM05D006351 ORTHO05D007796 2.4e-113 413.7 577 43.5
MBI14_g15653_MAGBIO Magnolia biondii HOM05D006351 ORTHO05D007796 4.6e-112 409.5 610 39.8
AUR62031572 Chenopodium quinoa HOM05D006351 ORTHO05D007796 6.0e-112 409.1 606 39.8
Lj8A733T33 Lonicera japonica HOM05D006351 ORTHO05D007796 2.3e-111 407.1 668 39.2
EL10Ac2g04151 Beta vulgaris HOM05D006351 ORTHO05D007796 1.8e-108 397.5 666 36.6
CSS0041020 Camellia sinensis var. sinensis HOM05D006351 ORTHO05D007796 4.0e-108 396.4 606 40.4
Aqoxy7G03341 Aquilegia oxysepala HOM05D006351 ORTHO05D007796 8.4e-106 388.7 610 38.4
HanXRQChr16g0511151 Helianthus annuus HOM05D006351 ORTHO05D007796 2.4e-105 387.1 579 39.4
Migut.G00796 Erythranthe guttata HOM05D006351 ORTHO05D007796 5.4e-105 386.0 616 38.6
Gorai.001G036000 Gossypium raimondii HOM05D006351 ORTHO05D007796 5.4e-105 386.0 541 42.5
Hund03479 Selenicereus undatus HOM05D006351 ORTHO05D007796 3.5e-104 383.3 661 36.5
Lsat_1_v5_gn_6_115401 Lactuca sativa HOM05D006351 ORTHO05D007796 4.6e-104 382.9 605 39.7
arahy.Tifrunner.gnm1.ann1.7H8NL8 Arachis hypogaea HOM05D006351 ORTHO05D007796 5.1e-103 379.4 648 38.4
Cc08_g00180 Coffea canephora HOM05D006351 ORTHO05D007796 3.3e-102 376.7 580 41.6
COL.COLO4_18917 Corchorus olitorius HOM05D006351 ORTHO05D007796 6.2e-101 372.5 613 39.2
ECA246G3333 Erigeron canadensis HOM05D006351 ORTHO05D007796 5.3e-100 369.4 572 39.7
ATR0629G052 Amborella trichopoda HOM05D006351 ORTHO05D007796 2.6e-99 367.1 605 36.9
Cpa.g.sc187.30 Carica papaya HOM05D006351 ORTHO05D007796 3.2e-97 360.1 505 44.2
Glyma.17G215800 Glycine max HOM05D006351 ORTHO05D007796 4.2e-97 359.8 605 38.7
AUR62012449 Chenopodium quinoa HOM05D006351 ORTHO05D007796 6.7e-95 352.4 525 40.2
Os08g0290100 Oryza sativa ssp. japonica HOM05D006351 ORTHO05D007796 3.4e-91 340.1 614 35.7
SGA_v2.0_scaffold12G06223 Striga asiatica HOM05D006351 ORTHO05D007796 1.1e-89 335.1 659 35.4
PSO782G3777 Papaver somniferum HOM05D006351 ORTHO05D007796 1.4e-89 334.7 542 38.7
HPP92_020077 Vanilla planifolia HOM05D006351 ORTHO05D007796 7.9e-88 328.9 618 34.3
MELO3C016986.2 Cucumis melo HOM05D006351 ORTHO05D007796 2.8e-85 320.5 477 40.9
Hma1.2p1_0043F.1_g025900 Hydrangea macrophylla HOM05D006351 ORTHO05D007796 5.3e-84 316.2 422 41.5
Sed0014901 Sechium edule HOM05D006351 ORTHO05D007796 1.0e-79 302.0 420 43.3
unitig_0.g2412 Utricularia gibba HOM05D006351 ORTHO05D007796 5.1e-79 299.7 523 34.8
FAN24G1918 Fragaria x ananassa HOM05D006351 ORTHO05D007796 1.3e-77 295.0 380 43.9
FAN20G2359 Fragaria x ananassa HOM05D006351 ORTHO05D007796 4.1e-76 290.0 380 43.2
FAN15G0846 Fragaria x ananassa HOM05D006351 ORTHO05D007796 5.0e-74 283.1 375 42.4
Hma1.2p1_0043F.1_g025890 Hydrangea macrophylla HOM05D006351 ORTHO05D007796 2.5e-73 280.8 395 40.0
Nitab4.5_0002992g0070 Nicotiana tabacum HOM05D006351 ORTHO05D007796 1.3e-69 268.5 667 31.2
Nitab4.5_0000389g0140 Nicotiana tabacum HOM05D006351 ORTHO05D007796 2.2e-69 267.7 651 32.0
FAN27G0329 Fragaria x ananassa HOM05D006351 ORTHO05D007796 2.5e-65 254.2 363 40.5
Zm00001eb028280 Zea mays HOM05D006351 ORTHO05D007796 3.0e-63 247.3 445 35.3
Ah.10g035670 Amaranthus hybridus HOM05D006351 ORTHO05D007796 3.9e-63 246.9 602 29.9
arahy.Tifrunner.gnm1.ann1.XZMU6N Arachis hypogaea HOM05D006351 ORTHO05D007796 1.5e-54 218.4 565 30.4
Medtr1g013030 Medicago truncatula HOM05D006351 ORTHO05D007796 2.0e-51 208.0 334 38.3
CAN.G142.3 Capsicum annuum HOM05D006351 ORTHO05D007796 2.2e-45 188.0 307 37.5
arahy.Tifrunner.gnm1.ann1.C8TN8W Arachis hypogaea HOM05D006351 ORTHO05D007796 1.3e-42 178.7 453 30.7
Cc11_g00420 Coffea canephora HOM05D006351 ORTHO05D007796 8.5e-42 176.0 265 40.8
SEGI_10292 Sequoiadendron giganteum HOM05D006351 ORTHO05D000001 2.4e-36 157.9 257 35.8
Mapoly0027s0143 Marchantia polymorpha HOM05D006351 ORTHO05D007796 1.3e-34 152.1 576 24.3
CANSAT25G0983 Cannabis sativa HOM05D006351 ORTHO05D007796 3.3e-33 147.5 162 48.8
CDE02G0453 Ceratophyllum demersum HOM05D006351 ORTHO05D007796 2.6e-30 137.9 236 38.1
AagrBONN_evm.TU.Sc2ySwM_368.1425 Anthoceros agrestis HOM05D006351 ORTHO05D007796 3.4e-30 137.5 592 25.3
Pp3c8_15630 Physcomitrium patens HOM05D006351 ORTHO05D007796 7.5e-30 136.3 519 25.6
SMO200G0034 Selaginella moellendorffii HOM05D006351 ORTHO05D007796 1.1e-28 132.5 506 26.3
Pp3c20_13310 Physcomitrium patens HOM05D006351 ORTHO05D007796 1.9e-25 121.7 513 24.4
MBI14_g30358_MAGBIO Magnolia biondii HOM05D006351 ORTHO05D007796 1.2e-22 112.5 153 42.5
FAN07G1533 Fragaria x ananassa HOM05D006351 ORTHO05D007796 6.2e-16 90.1 91 49.5
CAN.G142.4 Capsicum annuum HOM05D006351 ORTHO05D007796 3.1e-15 87.8 182 36.3
Medtr1g012280 Medicago truncatula HOM05D006351 ORTHO05D007796 1.4e-12 79.0 127 38.6
CAN.G142.2 Capsicum annuum HOM05D006351 ORTHO05D007796 1.0e-10 72.8 131 34.4
Medtr1g013010 Medicago truncatula HOM05D006351 ORTHO05D007796 4.0e-07 60.8 72 44.4


User provided reference genes

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