Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p62710 Brassica napus HOM05D004929 ORTHO05D006492 6.6e-179 630.6 314 100.0
BolC9t59108H Brassica oleracea HOM05D004929 ORTHO05D006492 1.4e-168 596.3 323 93.8
A10p24090 Brassica napus HOM05D004929 ORTHO05D006492 1.0e-147 526.9 344 80.8
BcaC04g19032 Brassica carinata HOM05D004929 ORTHO05D006492 6.1e-140 501.1 360 76.4
BcaB08g36995 Brassica carinata HOM05D004929 ORTHO05D006492 6.7e-139 497.7 366 74.9
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 2.0e-135 486.1 363 72.5
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 2.4e-128 462.6 369 68.3
BcaB08g36997 Brassica carinata HOM05D004929 ORTHO05D006492 8.5e-126 454.1 367 67.6
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 1.2e-124 450.3 367 66.5
CARHR198840 Cardamine hirsuta HOM05D004929 ORTHO05D006492 4.4e-122 441.8 367 65.7
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 9.7e-122 440.7 364 65.1
Thhalv10013912m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 5.0e-118 428.3 355 65.1
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 9.4e-109 397.5 353 60.6
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 1.8e-107 393.3 369 58.0
AT3G01640 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 3.0e-107 392.5 364 58.0
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 8.8e-107 391.0 364 58.0
BcaC01g04530 Brassica carinata HOM05D004929 ORTHO05D006492 7.5e-106 387.9 365 57.8
C03p39500 Brassica napus HOM05D004929 ORTHO05D006492 2.8e-105 386.0 365 57.8
BraA03t12414Z Brassica rapa HOM05D004929 ORTHO05D006492 3.7e-105 385.6 349 59.3
A03p32440 Brassica napus HOM05D004929 ORTHO05D006492 2.4e-104 382.9 349 59.0
BolC3t16218H Brassica oleracea HOM05D004929 ORTHO05D006492 1.2e-103 380.6 349 58.7
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 2.7e-103 379.4 351 59.5
THA.LOC104821096 Tarenaya hassleriana HOM05D004929 ORTHO05D006492 3.8e-102 375.6 366 56.8
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 6.6e-102 374.8 365 56.4
QL02p074005 Quercus lobata HOM05D004929 ORTHO05D006492 5.6e-101 371.7 358 56.4
MELO3C021592.2 Cucumis melo HOM05D004929 ORTHO05D006492 1.8e-99 366.7 357 54.1
Nn8g40033 Nelumbo nucifera HOM05D004929 ORTHO05D006492 1.8e-99 366.7 354 55.4
CsaV3_5G027030 Cucumis sativus L. HOM05D004929 ORTHO05D006492 2.3e-99 366.3 357 54.3
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 4.0e-99 365.5 361 54.8
ClCG09G019380 Citrullus lanatus HOM05D004929 ORTHO05D006492 1.2e-98 364.0 357 53.8
Thecc.04G019500 Theobroma cacao HOM05D004929 ORTHO05D006492 7.5e-98 361.3 349 55.0
Duzib147G0164 Durio zibethinus HOM05D004929 ORTHO05D006492 9.8e-98 360.9 357 54.3
Sed0027438 Sechium edule HOM05D004929 ORTHO05D006492 1.7e-97 360.1 354 54.5
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 2.2e-97 359.8 365 54.0
Gohir.A09G030100 Gossypium hirsutum HOM05D004929 ORTHO05D006492 3.7e-97 359.0 366 51.6
Prupe.3G293800 Prunus persica HOM05D004929 ORTHO05D006492 8.3e-97 357.8 350 55.4
MD09G1023000 Malus domestica HOM05D004929 ORTHO05D006492 1.1e-96 357.5 358 54.2
Sed0020215 Sechium edule HOM05D004929 ORTHO05D006492 1.4e-96 357.1 357 53.2
Manes.15G151900 Manihot esculenta HOM05D004929 ORTHO05D006492 2.4e-96 356.3 347 54.2
TWI56G0780 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 2.4e-96 356.3 355 53.0
Sabra16G0222700 Salix brachista HOM05D004929 ORTHO05D006492 3.2e-96 355.9 366 52.7
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 5.4e-96 355.1 363 54.5
Ciclev10015593m.g Citrus clementina HOM05D004929 ORTHO05D006492 7.0e-96 354.8 349 53.6
Dinv25726 Davidia involucrata HOM05D004929 ORTHO05D006492 7.0e-96 354.8 365 54.2
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 9.2e-96 354.4 363 54.3
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 9.2e-96 354.4 363 54.3
CiPaw.03G045500 Carya illinoinensis HOM05D004929 ORTHO05D006492 1.2e-95 354.0 352 54.3
TWI12G0632 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 1.6e-95 353.6 348 53.2
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 2.0e-95 353.2 345 54.2
Gohir.D09G029800 Gossypium hirsutum HOM05D004929 ORTHO05D006492 2.0e-95 353.2 366 51.1
Potri.001G343400 Populus trichocarpa HOM05D004929 ORTHO05D006492 3.5e-95 352.4 356 52.8
Haze_14758 Corylus avellana HOM05D004929 ORTHO05D006492 4.6e-95 352.1 366 53.0
GSVIVG01032385001 Vitis vinifera HOM05D004929 ORTHO05D006492 4.6e-95 352.1 350 54.0
Gorai.006G034800 Gossypium raimondii HOM05D004929 ORTHO05D006492 5.9e-95 351.7 366 51.1
Lju41A43T26 Lonicera japonica HOM05D004929 ORTHO05D006492 5.9e-95 351.7 356 52.0
MD17G1022300 Malus domestica HOM05D004929 ORTHO05D006492 7.8e-95 351.3 366 53.8
Cfa007339 Carpinus fangiana HOM05D004929 ORTHO05D006492 1.0e-94 350.9 357 52.9
RcHm_v2.0_Chr2g0173281 Rosa chinensis HOM05D004929 ORTHO05D006492 1.3e-94 350.5 366 53.0
vmacro05876 Vaccinium macrocarpon HOM05D004929 ORTHO05D006492 3.0e-94 349.4 349 54.2
Migut.K01411 Erythranthe guttata HOM05D004929 ORTHO05D006492 3.9e-94 349.0 354 54.0
FAN02G0047 Fragaria x ananassa HOM05D004929 ORTHO05D006492 3.9e-94 349.0 375 53.1
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 1.1e-93 347.4 350 54.3
CANSAT64G1903 Cannabis sativa HOM05D004929 ORTHO05D006492 4.3e-93 345.5 350 53.4
Rhsim10G0014700 Rhododendron simsii HOM05D004929 ORTHO05D006492 5.6e-93 345.1 353 53.0
TAR633G2310 Trochodendron aralioides HOM05D004929 ORTHO05D006492 5.6e-93 345.1 365 51.2
CiPaw.04G029600 Carya illinoinensis HOM05D004929 ORTHO05D006492 7.3e-93 344.7 348 53.7
Aqoxy5G00914 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 9.5e-93 344.4 347 52.7
PSO699G0033 Papaver somniferum HOM05D004929 ORTHO05D006492 9.5e-93 344.4 349 53.6
PSO384G0906 Papaver somniferum HOM05D004929 ORTHO05D006492 1.2e-92 344.0 349 53.3
Actinidia05982 Actinidia chinensis HOM05D004929 ORTHO05D006492 8.0e-92 341.3 352 52.0
Nitab4.5_0001860g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 1.8e-91 340.1 351 51.3
HanXRQChr17g0548641 Helianthus annuus HOM05D004929 ORTHO05D006492 4.0e-91 339.0 352 54.8
Peaxi162Scf03028g00012 Petunia axillaris HOM05D004929 ORTHO05D006492 6.8e-91 338.2 347 52.2
Solyc02g093440.4 Solanum lycopersicum HOM05D004929 ORTHO05D006492 6.8e-91 338.2 348 52.3
EL10Ac6g14097 Beta vulgaris HOM05D004929 ORTHO05D006492 1.2e-90 337.4 348 52.9
ECA246G1179 Erigeron canadensis HOM05D004929 ORTHO05D006492 1.5e-90 337.0 351 52.7
Cc09_g04510 Coffea canephora HOM05D004929 ORTHO05D006492 2.6e-90 336.3 351 51.6
Peaxi162Scf00129g01650 Petunia axillaris HOM05D004929 ORTHO05D006492 2.6e-90 336.3 347 51.9
Sopen02g038230 Solanum pennellii HOM05D004929 ORTHO05D006492 2.6e-90 336.3 348 52.3
CAN.G473.20 Capsicum annuum HOM05D004929 ORTHO05D006492 3.4e-90 335.9 352 51.7
Duzib264G0638 Durio zibethinus HOM05D004929 ORTHO05D006492 4.4e-90 335.5 391 49.6
Peaxi162Scf00080g01316 Petunia axillaris HOM05D004929 ORTHO05D005557 2.2e-89 333.2 349 52.7
arahy.Tifrunner.gnm1.ann1.FEY4ZS Arachis hypogaea HOM05D004929 ORTHO05D006492 2.9e-89 332.8 349 51.0
TPR.G31950 Trifolium pratense HOM05D004929 ORTHO05D006492 2.9e-89 332.8 353 51.6
arahy.Tifrunner.gnm1.ann1.NF5K9F Arachis hypogaea HOM05D004929 ORTHO05D006492 3.7e-89 332.4 349 50.7
AUR62008872 Chenopodium quinoa HOM05D004929 ORTHO05D006492 4.9e-89 332.0 349 51.9
Lalb_Chr06g0176621 Lupinus albus HOM05D004929 ORTHO05D006492 4.9e-89 332.0 347 50.1
PGSC0003DMG400012608 Solanum tuberosum HOM05D004929 ORTHO05D006492 1.1e-88 330.9 348 51.4
HPP92_015407 Vanilla planifolia HOM05D004929 ORTHO05D006492 1.4e-88 330.5 354 50.6
Ah.03g137000 Amaranthus hybridus HOM05D004929 ORTHO05D006492 1.9e-88 330.1 348 52.9
Aqoxy4G03095 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 1.9e-88 330.1 360 49.7
Lsat_1_v5_gn_0_18301 Lactuca sativa HOM05D004929 ORTHO05D006492 1.9e-88 330.1 349 51.3
Hund23289 Selenicereus undatus HOM05D004929 ORTHO05D006492 1.9e-88 330.1 353 51.6
Glyma.05G002500 Glycine max HOM05D004929 ORTHO05D006492 2.4e-88 329.7 351 50.1
Phvul.004G004700 Phaseolus vulgaris HOM05D004929 ORTHO05D006492 3.2e-88 329.3 346 51.2
SalBow7G3047 Salvia bowleyana HOM05D004929 ORTHO05D006492 3.2e-88 329.3 352 50.0
HanXRQChr17g0548651 Helianthus annuus HOM05D004929 ORTHO05D006492 7.0e-88 328.2 343 53.4
Ca_04143_v3 Cicer arietinum L. HOM05D004929 ORTHO05D006492 1.6e-87 327.0 353 51.0
DCAR_021732 Daucus carota HOM05D004929 ORTHO05D006492 1.6e-87 327.0 330 53.3
MSTRG.3138 Avicennia marina HOM05D004929 ORTHO05D006492 2.7e-87 326.2 351 50.1
VMungo0464G1388 Vigna mungo HOM05D004929 ORTHO05D006492 2.7e-87 326.2 346 51.4
Lj2g0024676 Lotus japonicus HOM05D004929 ORTHO05D006492 3.5e-87 325.9 351 50.7
Medtr6g004430 Medicago truncatula HOM05D004929 ORTHO05D006492 3.5e-87 325.9 348 52.0
MBI05_g22077_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 7.8e-87 324.7 348 51.1
Zm00001eb025800 Zea mays HOM05D004929 ORTHO05D006492 1.5e-82 310.5 357 48.7
AUR62031837 Chenopodium quinoa HOM05D004929 ORTHO05D006492 7.5e-82 308.1 389 45.5
SHI00354 Sapria himalayana HOM05D004929 ORTHO05D006492 1.3e-81 307.4 334 50.0
Eucgr.I01731 Eucalyptus grandis HOM05D004929 ORTHO05D006492 3.7e-81 305.8 284 57.4
COL.COLO4_29172 Corchorus olitorius HOM05D004929 ORTHO05D006492 4.9e-81 305.4 328 51.2
Os11g0217300 Oryza sativa ssp. japonica HOM05D004929 ORTHO05D006492 8.3e-81 304.7 340 49.7
Oeu018151.1 Olea europaea HOM05D004929 ORTHO05D006492 2.5e-77 293.1 343 47.8
ATR0827G043 Amborella trichopoda HOM05D004929 ORTHO05D006492 3.3e-77 292.7 366 44.8
arahy.Tifrunner.gnm1.ann1.BJ3QP1 Arachis hypogaea HOM05D004929 ORTHO05D006492 4.7e-76 288.9 316 50.6
Nitab4.5_0006683g0060 Nicotiana tabacum HOM05D004929 ORTHO05D006492 6.8e-75 285.0 330 47.9
BcaB08g36982 Brassica carinata HOM05D004929 ORTHO05D006492 4.6e-71 272.3 167 84.4
SMO145G0043 Selaginella moellendorffii HOM05D004929 ORTHO05D006492 3.3e-69 266.2 333 45.0
Sc03g0007290 Simmondsia chinensis HOM05D004929 ORTHO05D006492 2.4e-67 260.0 264 54.9
HPP92_026990 Vanilla planifolia HOM05D004929 ORTHO05D006492 9.9e-66 254.6 269 52.0
Psat1g053480 Pisum sativum HOM05D004929 ORTHO05D006492 1.7e-65 253.8 268 51.9
SGA_v2.0_scaffold30G12409 Striga asiatica HOM05D004929 ORTHO05D006492 3.2e-64 249.6 263 51.7
Mapoly0023s0058 Marchantia polymorpha HOM05D004929 ORTHO05D006492 4.6e-63 245.7 346 43.9
Dinv33427 Davidia involucrata HOM05D004929 ORTHO05D006492 5.6e-61 238.8 261 49.8
Atru.chr6.2430 Acer truncatum HOM05D004929 ORTHO05D006492 7.3e-61 238.4 170 64.1
BolC9t59344H Brassica oleracea HOM05D004929 ORTHO05D006492 1.5e-58 230.7 161 75.8
Nitab4.5_0000040g0670 Nicotiana tabacum HOM05D004929 ORTHO05D006492 2.2e-57 226.9 315 43.2
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.3e-54 217.6 261 46.7
SHI25478 Sapria himalayana HOM05D004929 ORTHO05D006492 6.6e-54 215.3 284 45.4
CBR_g3618 Chara braunii HOM05D004929 ORTHO05D006492 8.7e-54 214.9 340 38.5
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 1.9e-53 213.8 262 46.6
ATR0681G379 Amborella trichopoda HOM05D004929 ORTHO05D006492 1.1e-51 208.0 251 47.0
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 5.3e-51 205.7 328 41.5
SGA_v2.0_scaffold47G17516 Striga asiatica HOM05D004929 ORTHO05D006492 8.4e-49 198.4 332 38.9
Cre02.g107600 Chlamydomonas reinhardtii HOM05D004929 ORTHO05D006492 1.3e-44 184.5 350 36.3
MCO09G795 Micromonas commoda HOM05D004929 ORTHO05D006492 1.6e-44 184.1 348 34.2
A10p26090 Brassica napus HOM05D004929 ORTHO05D006492 3.0e-38 163.3 125 72.0
Nitab4.5_0001550g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 3.9e-38 162.9 133 60.9
CDE07G0337 Ceratophyllum demersum HOM05D004929 ORTHO05D006492 1.3e-36 157.9 208 43.3
MBI05_g01825_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 2.6e-34 150.2 196 45.4
PRCOL_00005101 Prasinoderma coloniale HOM05D004929 ORTHO05D006492 2.6e-34 150.2 345 33.3
Atru.chr6.2429 Acer truncatum HOM05D004929 ORTHO05D006492 1.0e-33 148.3 114 61.4
Oeu033729.3 Olea europaea HOM05D004929 ORTHO05D006492 2.9e-33 146.7 128 57.0
BcaNung06761 Brassica carinata HOM05D004929 ORTHO05D006492 7.9e-31 138.7 70 94.3
CDE07G1161 Ceratophyllum demersum HOM05D004929 ORTHO05D043891 3.7e-28 129.8 114 57.9
Sp6g29550 Schrenkiella parvula HOM05D004929 ORTHO05D043891 4.1e-27 126.3 68 91.2
MSTRG.3285 Avicennia marina HOM05D004929 ORTHO05D006492 3.2e-24 116.7 83 66.3
Sopen02g038030 Solanum pennellii HOM05D004929 ORTHO05D006492 1.4e-16 91.3 62 64.5
arahy.Tifrunner.gnm1.ann1.6CI6DX Arachis hypogaea HOM05D004929 ORTHO05D031499 4.7e-07 59.7 54 51.9
arahy.Tifrunner.gnm1.ann1.XQCE19 Arachis hypogaea HOM05D004929 ORTHO05D031499 8.0e-07 58.9 37 62.2
MD17G1022500 Malus domestica HOM05D004929 ORTHO05D006492 1.4e-06 58.2 80 43.8


User provided reference genes

Program Settings