Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36850 Brassica carinata HOM05D004859 ORTHO05D005807 5.4e-53 210.7 104 100.0
BcaC04g18876 Brassica carinata HOM05D004859 ORTHO05D005807 5.4e-53 210.7 104 100.0
C09p60710 Brassica napus HOM05D004859 ORTHO05D005807 5.4e-53 210.7 104 100.0
BolC9t58902H Brassica oleracea HOM05D004859 ORTHO05D005807 5.4e-53 210.7 104 100.0
Sp6g27710 Schrenkiella parvula HOM05D004859 ORTHO05D005807 5.4e-53 210.7 104 100.0
BraA02t05326Z Brassica rapa HOM05D004859 ORTHO05D005807 1.2e-52 209.5 104 99.0
A10p22730 Brassica napus HOM05D004859 ORTHO05D005807 3.5e-52 208.0 104 98.1
BraA10t44336Z Brassica rapa HOM05D004859 ORTHO05D005807 3.5e-52 208.0 104 98.1
Thhalv10015095m.g Eutrema salsugineum HOM05D004859 ORTHO05D005807 4.6e-52 207.6 104 97.1
A02p03550 Brassica napus HOM05D004859 ORTHO05D005807 6.0e-52 207.2 104 98.1
BolC2t06754H Brassica oleracea HOM05D004859 ORTHO05D005807 2.3e-51 205.3 104 97.1
BcaC03g18492 Brassica carinata HOM05D004859 ORTHO05D005807 6.6e-51 203.8 105 97.1
CARHR196760 Cardamine hirsuta HOM05D004859 ORTHO05D005807 8.7e-51 203.4 105 97.1
BcaB01g04980 Brassica carinata HOM05D004859 ORTHO05D005807 7.3e-50 200.3 106 97.2
BolC3t13398H Brassica oleracea HOM05D004859 ORTHO05D005807 7.3e-50 200.3 106 97.2
A03p07800 Brassica napus HOM05D004859 ORTHO05D005807 9.6e-50 199.9 107 96.3
BraA03t10107Z Brassica rapa HOM05D004859 ORTHO05D005807 9.6e-50 199.9 107 96.3
AL6G27410 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 1.6e-49 199.1 105 95.2
AT5G16470 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 1.6e-49 199.1 105 95.2
Carub.0006s1467 Capsella rubella HOM05D004859 ORTHO05D005807 1.6e-49 199.1 105 95.2
Aa31LG11G13190 Aethionema arabicum HOM05D004859 ORTHO05D005807 1.7e-46 189.1 104 91.3
Aa31LG5G13260 Aethionema arabicum HOM05D004859 ORTHO05D005807 1.2e-44 183.0 107 86.0
Sp3g01820 Schrenkiella parvula HOM05D004859 ORTHO05D005807 4.6e-44 181.0 106 85.8
Carub.0003s0189 Capsella rubella HOM05D004859 ORTHO05D005807 6.0e-44 180.6 106 85.8
AL3G12200 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 3.9e-43 177.9 106 84.9
BcaC05g30507 Brassica carinata HOM05D004859 ORTHO05D005807 3.9e-43 177.9 106 84.0
ECA238G2179 Erigeron canadensis HOM05D004859 ORTHO05D005807 3.9e-43 177.9 106 82.1
BcaC05g30510 Brassica carinata HOM05D004859 ORTHO05D005807 6.6e-43 177.2 106 83.0
C09p75910 Brassica napus HOM05D004859 ORTHO05D005807 6.6e-43 177.2 106 83.0
CARHR076800 Cardamine hirsuta HOM05D004859 ORTHO05D005807 6.6e-43 177.2 106 84.0
AT3G02790 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 1.9e-42 175.6 106 84.0
BolC5t35066H Brassica oleracea HOM05D004859 ORTHO05D005807 2.5e-42 175.3 106 83.0
Lalb_Chr03g0038491 Lupinus albus HOM05D004859 ORTHO05D005807 3.3e-42 174.9 106 81.1
Atru.chr12.1788 Acer truncatum HOM05D004859 ORTHO05D005807 9.6e-42 173.3 107 80.4
HanXRQChr11g0333601 Helianthus annuus HOM05D004859 ORTHO05D005807 1.3e-41 172.9 106 80.2
Sc06g0005050 Simmondsia chinensis HOM05D004859 ORTHO05D005807 2.1e-41 172.2 106 81.1
Glyma.09G250600 Glycine max HOM05D004859 ORTHO05D005807 6.2e-41 170.6 106 75.5
ClCG03G010710 Citrullus lanatus HOM05D004859 ORTHO05D005807 8.1e-41 170.2 106 78.3
Sed0011478 Sechium edule HOM05D004859 ORTHO05D005807 8.1e-41 170.2 106 77.4
THA.LOC104802953 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 1.1e-40 169.9 106 78.3
Medtr7g079990 Medicago truncatula HOM05D004859 ORTHO05D005807 1.8e-40 169.1 107 78.5
Lalb_Chr01g0020391 Lupinus albus HOM05D004859 ORTHO05D005807 2.4e-40 168.7 106 76.4
SEGI_19955 Sequoiadendron giganteum HOM05D004859 ORTHO05D005807 2.4e-40 168.7 106 80.2
MELO3C010059.2 Cucumis melo HOM05D004859 ORTHO05D005807 3.1e-40 168.3 106 77.4
THA.LOC104827174 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 5.3e-40 167.5 106 79.2
ECA233G5366 Erigeron canadensis HOM05D004859 ORTHO05D005807 6.9e-40 167.2 106 76.4
TWI18G1000 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 6.9e-40 167.2 106 79.2
RcHm_v2.0_Chr3g0447891 Rosa chinensis HOM05D004859 ORTHO05D005807 9.0e-40 166.8 106 74.5
CANSAT54G1839 Cannabis sativa HOM05D004859 ORTHO05D005807 1.5e-39 166.0 106 80.2
Glyma.18G241900 Glycine max HOM05D004859 ORTHO05D005807 1.5e-39 166.0 106 76.4
Rhsim09G0129900 Rhododendron simsii HOM05D004859 ORTHO05D005807 1.5e-39 166.0 105 77.1
TPR.G30708 Trifolium pratense HOM05D004859 ORTHO05D005807 1.5e-39 166.0 105 76.2
Gohir.A13G154200 Gossypium hirsutum HOM05D004859 ORTHO05D005807 2.0e-39 165.6 106 78.3
Gohir.D13G158900 Gossypium hirsutum HOM05D004859 ORTHO05D005807 2.0e-39 165.6 106 78.3
Gorai.013G179600 Gossypium raimondii HOM05D004859 ORTHO05D005807 2.0e-39 165.6 106 78.3
Lj1g0018632 Lotus japonicus HOM05D004859 ORTHO05D005807 2.0e-39 165.6 105 74.3
PSO675G0300 Papaver somniferum HOM05D004859 ORTHO05D005807 2.0e-39 165.6 107 75.7
PSO675G8596 Papaver somniferum HOM05D004859 ORTHO05D005807 2.0e-39 165.6 107 75.7
Sc16g0010390 Simmondsia chinensis HOM05D004859 ORTHO05D005807 2.0e-39 165.6 106 76.4
Gohir.A05G391600 Gossypium hirsutum HOM05D004859 ORTHO05D005807 2.6e-39 165.2 106 78.3
Peaxi162Scf00344g00092 Petunia axillaris HOM05D004859 ORTHO05D005807 2.6e-39 165.2 107 78.5
Ca_07986_v3 Cicer arietinum L. HOM05D004859 ORTHO05D005807 3.4e-39 164.9 106 76.4
Ciclev10013411m.g Citrus clementina HOM05D004859 ORTHO05D005807 4.5e-39 164.5 106 75.5
Gohir.D04G025700 Gossypium hirsutum HOM05D004859 ORTHO05D005807 4.5e-39 164.5 106 77.4
Gorai.012G028300 Gossypium raimondii HOM05D004859 ORTHO05D005807 4.5e-39 164.5 106 77.4
Lsat_1_v5_gn_2_18260 Lactuca sativa HOM05D004859 ORTHO05D005807 4.5e-39 164.5 107 77.6
Psat3g138280 Pisum sativum HOM05D004859 ORTHO05D005807 4.5e-39 164.5 107 75.7
CsaV3_1G044540 Cucumis sativus L. HOM05D004859 ORTHO05D005807 5.8e-39 164.1 106 76.4
DCAR_029983 Daucus carota HOM05D004859 ORTHO05D005807 7.6e-39 163.7 106 77.4
TAR629G2726 Trochodendron aralioides HOM05D004859 ORTHO05D005807 9.9e-39 163.3 106 76.4
Migut.F02136 Erythranthe guttata HOM05D004859 ORTHO05D005807 1.3e-38 162.9 106 77.4
Potri.019G053500 Populus trichocarpa HOM05D004859 ORTHO05D005807 1.3e-38 162.9 104 76.9
unitig_749.g13492 Utricularia gibba HOM05D004859 ORTHO05D005807 1.3e-38 162.9 106 76.4
Aqoxy7G00303 Aquilegia oxysepala HOM05D004859 ORTHO05D005807 1.7e-38 162.5 107 74.8
Phvul.008G054200 Phaseolus vulgaris HOM05D004859 ORTHO05D005807 1.7e-38 162.5 109 75.2
unitig_26.g9580 Utricularia gibba HOM05D000798 ORTHO05D000659 1.7e-38 162.5 106 72.6
Nitab4.5_0001435g0020 Nicotiana tabacum HOM05D004859 ORTHO05D005807 2.2e-38 162.2 107 75.7
Potri.013G086400 Populus trichocarpa HOM05D004859 ORTHO05D005807 2.2e-38 162.2 105 75.2
CDE12G0839 Ceratophyllum demersum HOM05D004859 ORTHO05D005807 2.9e-38 161.8 106 75.5
FAN05G4796 Fragaria x ananassa HOM05D004859 ORTHO05D005807 3.8e-38 161.4 106 72.6
DCAR_024584 Daucus carota HOM05D004859 ORTHO05D005807 4.9e-38 161.0 107 74.8
Gorai.004G261900 Gossypium raimondii HOM05D004859 ORTHO05D005807 4.9e-38 161.0 105 74.3
Duzib177G0866 Durio zibethinus HOM05D004859 ORTHO05D005807 6.4e-38 160.6 106 75.5
Gohir.D08G245400 Gossypium hirsutum HOM05D004859 ORTHO05D005807 6.4e-38 160.6 105 74.3
Nitab4.5_0000083g0160 Nicotiana tabacum HOM05D004859 ORTHO05D005807 6.4e-38 160.6 107 74.8
PGR031G2676 Punica granatum HOM05D004859 ORTHO05D005807 8.4e-38 160.2 106 76.4
CSS0011817 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 1.1e-37 159.8 105 75.2
CANSAT35G0417 Cannabis sativa HOM05D004859 ORTHO05D005807 1.4e-37 159.5 106 74.5
Oeu062049.1 Olea europaea HOM05D004859 ORTHO05D005807 1.9e-37 159.1 106 73.6
TWI36G0708 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 2.4e-37 158.7 106 73.6
VMungo1383G1359 Vigna mungo HOM05D004859 ORTHO05D005807 2.4e-37 158.7 106 75.5
Manes.12G005900 Manihot esculenta HOM05D004859 ORTHO05D005807 3.2e-37 158.3 106 73.6
Nn7g37400 Nelumbo nucifera HOM05D004859 ORTHO05D005807 3.2e-37 158.3 106 75.5
FvH4_6g00510 Fragaria vesca HOM05D004859 ORTHO05D005807 4.2e-37 157.9 108 71.3
Ah.06g195490 Amaranthus hybridus HOM05D004859 ORTHO05D005807 5.4e-37 157.5 106 74.5
COL.COLO4_19821 Corchorus olitorius HOM05D004859 ORTHO05D005807 5.4e-37 157.5 107 72.9
Duzib128G0817 Durio zibethinus HOM05D004859 ORTHO05D005807 5.4e-37 157.5 106 72.6
FAN09G3430 Fragaria x ananassa HOM05D004859 ORTHO05D005807 5.4e-37 157.5 107 71.0
FAN14G1059 Fragaria x ananassa HOM05D004859 ORTHO05D005807 5.4e-37 157.5 107 71.0
QL01p048380 Quercus lobata HOM05D004859 ORTHO05D005807 5.4e-37 157.5 105 75.2
Cpa.g.sc39.7 Carica papaya HOM05D004859 ORTHO05D005807 7.1e-37 157.1 106 73.6
Prupe.6G361200 Prunus persica HOM05D004859 ORTHO05D005807 7.1e-37 157.1 116 67.2
Solyc04g056350.1 Solanum lycopersicum HOM05D004859 ORTHO05D005807 7.1e-37 157.1 106 73.6
PGSC0003DMG400007259 Solanum tuberosum HOM05D004859 ORTHO05D005807 7.1e-37 157.1 106 74.5
GSVIVG01019111001 Vitis vinifera HOM05D004859 ORTHO05D005807 7.1e-37 157.1 105 74.3
Sopen04g025250 Solanum pennellii HOM05D004859 ORTHO05D005807 9.3e-37 156.8 106 73.6
CAN.G217.12 Capsicum annuum HOM05D004859 ORTHO05D005807 1.2e-36 156.4 106 72.6
Gohir.A08G225000 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.2e-36 156.4 102 73.5
Hma1.2p1_0171F.1_g075510 Hydrangea macrophylla HOM05D004859 ORTHO05D005807 1.2e-36 156.4 106 72.6
Cc09_g03620 Coffea canephora HOM05D004859 ORTHO05D005807 1.6e-36 156.0 111 71.2
MBI18_g38869_MAGBIO Magnolia biondii HOM05D004859 ORTHO05D005807 1.6e-36 156.0 106 73.6
Oeu020252.1 Olea europaea HOM05D004859 ORTHO05D005807 1.6e-36 156.0 106 72.6
CSS0045397 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 2.7e-36 155.2 107 72.0
CiPaw.07G080000 Carya illinoinensis HOM05D004859 ORTHO05D005807 3.5e-36 154.8 105 69.5
Lsat_1_v5_gn_8_2360 Lactuca sativa HOM05D004859 ORTHO05D005807 4.6e-36 154.5 105 70.5
Thecc.05G199300 Theobroma cacao HOM05D004859 ORTHO05D005807 4.6e-36 154.5 106 72.6
MD12G1260500 Malus domestica HOM05D004859 ORTHO05D005807 6.0e-36 154.1 111 67.6
Manes.13G005600 Manihot esculenta HOM05D004859 ORTHO05D005807 6.0e-36 154.1 106 71.7
ATR0568G125 Amborella trichopoda HOM05D004859 ORTHO05D005807 1.0e-35 153.3 107 72.9
Cfa006265 Carpinus fangiana HOM05D004859 ORTHO05D005807 1.0e-35 153.3 106 71.7
MD04G1244600 Malus domestica HOM05D004859 ORTHO05D005807 1.3e-35 152.9 112 67.9
Pp3c26_1250 Physcomitrium patens HOM05D004859 ORTHO05D005807 1.3e-35 152.9 106 70.8
HanXRQChr09g0244001 Helianthus annuus HOM05D004859 ORTHO05D005807 1.8e-35 152.5 106 72.6
SalBow6G1022 Salvia bowleyana HOM05D004859 ORTHO05D005807 1.8e-35 152.5 106 72.6
SHI13720 Sapria himalayana HOM05D004859 ORTHO05D005807 1.8e-35 152.5 105 72.4
HPP92_025926 Vanilla planifolia HOM05D004859 ORTHO05D005807 2.3e-35 152.1 104 71.2
Eucgr.H01388 Eucalyptus grandis HOM05D004859 ORTHO05D005807 3.0e-35 151.8 108 71.3
Haze_04552 Corylus avellana HOM05D004859 ORTHO05D005807 2.5e-34 148.7 106 70.8
EL10Ac4g09966 Beta vulgaris HOM05D004859 ORTHO05D005807 3.3e-34 148.3 101 73.3
AUR62000312 Chenopodium quinoa HOM05D004859 ORTHO05D005807 3.3e-34 148.3 106 71.7
AUR62006657 Chenopodium quinoa HOM05D004859 ORTHO05D005807 3.3e-34 148.3 106 71.7
Mapoly0153s0037 Marchantia polymorpha HOM05D004859 ORTHO05D005807 1.6e-33 146.0 107 70.1
Pp3c9_1130 Physcomitrium patens HOM05D004859 ORTHO05D005807 2.1e-33 145.6 106 70.8
Sabra13G0077700 Salix brachista HOM05D004859 ORTHO05D005807 2.8e-33 145.2 97 73.2
Actinidia38902 Actinidia chinensis HOM05D004859 ORTHO05D005807 4.8e-33 144.4 99 71.7
Zm00001eb272650 Zea mays HOM05D004859 ORTHO05D005807 6.2e-33 144.1 109 67.9
Pp3c15_1090 Physcomitrium patens HOM05D004859 ORTHO05D005807 4.0e-32 141.4 106 68.9
Zm00001eb227470 Zea mays HOM05D004859 ORTHO05D005807 6.9e-32 140.6 119 62.2
Os06g0708600 Oryza sativa ssp. japonica HOM05D004859 ORTHO05D005807 9.0e-32 140.2 115 64.3
SMO361G0285 Selaginella moellendorffii HOM05D004859 ORTHO05D005807 1.5e-31 139.4 106 65.1
A05p44330 Brassica napus HOM05D004859 ORTHO05D005807 4.2e-29 131.3 69 88.4
BraA06t23289Z Brassica rapa HOM05D004859 ORTHO05D005807 4.2e-29 131.3 69 88.4
BcaB08g36851 Brassica carinata HOM05D004859 ORTHO05D005807 6.2e-25 117.5 104 67.3
VMungo0464G0653 Vigna mungo HOM05D004859 ORTHO05D005807 1.4e-24 116.3 79 69.6
RcHm_v2.0_Chr1g0316641 Rosa chinensis HOM05D004859 ORTHO05D005807 5.0e-22 107.8 72 68.1
Nn1g09361 Nelumbo nucifera HOM05D004859 ORTHO05D005807 9.7e-18 93.6 52 82.7
Cre09.g416500 Chlamydomonas reinhardtii HOM05D004859 ORTHO05D005807 1.3e-17 93.2 104 53.8
PRCOL_00002520 Prasinoderma coloniale HOM05D004859 ORTHO05D005807 1.4e-16 89.7 101 48.5
Nn1g01054 Nelumbo nucifera HOM05D004859 ORTHO05D005807 3.1e-16 88.6 56 73.2
AUR62006656 Chenopodium quinoa HOM05D004859 ORTHO05D005807 3.9e-11 71.6 90 41.1
SHI22764 Sapria himalayana HOM05D004859 ORTHO05D005807 1.0e-06 57.0 80 43.8
SHI07073 Sapria himalayana HOM05D004859 ORTHO05D005807 2.9e-06 55.5 77 42.9


User provided reference genes

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